Wall clock time and date at job start Tue Mar 31 2020 19:12:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30824 * 1
3 3 Si 1.86802 * 120.00134 * 2 1
4 4 H 1.48497 * 109.46674 * 179.97438 * 3 2 1
5 5 H 1.48493 * 109.46849 * 299.99427 * 3 2 1
6 6 H 1.48497 * 109.47004 * 59.99702 * 3 2 1
7 7 C 1.39953 * 119.99622 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99214 * 168.77025 * 7 2 1
9 9 C 1.41397 * 120.00297 * 348.77264 * 7 2 1
10 10 C 1.40731 * 120.24324 * 331.57592 * 9 7 2
11 11 C 1.37594 * 119.74635 * 180.31820 * 10 9 7
12 12 C 1.38667 * 120.24480 * 359.66372 * 11 10 9
13 13 C 1.38614 * 120.49992 * 0.02562 * 12 11 10
14 14 C 1.37629 * 120.24938 * 0.02562 * 13 12 11
15 15 S 1.76208 * 120.12905 * 179.97438 * 14 13 12
16 16 O 1.42095 * 106.40345 * 132.27148 * 15 14 13
17 17 O 1.42097 * 106.39866 * 359.34991 * 15 14 13
18 18 N 1.65600 * 107.21547 * 245.81262 * 15 14 13
19 19 C 1.46500 * 120.00373 * 62.81666 * 18 15 14
20 20 C 1.50698 * 109.46978 * 165.96702 * 19 18 15
21 21 C 1.38222 * 120.01241 * 105.00197 * 20 19 18
22 22 C 1.38224 * 120.02746 * 180.27202 * 21 20 19
23 23 C 1.38270 * 120.04723 * 359.49293 * 22 21 20
24 24 C 1.38174 * 120.02374 * 0.50801 * 23 22 21
25 25 C 1.38437 * 120.01564 * 285.01919 * 20 19 18
26 26 F 1.35096 * 120.02374 * 359.96044 * 25 20 19
27 27 H 0.97006 * 120.00169 * 0.02562 * 1 2 3
28 28 H 1.08002 * 120.13076 * 0.02562 * 10 9 7
29 29 H 1.07991 * 119.88336 * 179.68260 * 11 10 9
30 30 H 1.07994 * 119.74539 * 180.02562 * 12 11 10
31 31 H 1.07995 * 119.87105 * 180.02562 * 13 12 11
32 32 H 0.97002 * 119.99508 * 242.81958 * 18 15 14
33 33 H 1.08995 * 109.46753 * 45.96555 * 19 18 15
34 34 H 1.09000 * 109.46713 * 285.96429 * 19 18 15
35 35 H 1.08002 * 119.98983 * 359.97438 * 21 20 19
36 36 H 1.07998 * 119.97726 * 179.72224 * 22 21 20
37 37 H 1.08003 * 119.98722 * 180.25275 * 23 22 21
38 38 H 1.08008 * 120.01001 * 179.76937 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 3.7022 1.3462 0.0006
5 1 1.8836 2.3963 -1.2125
6 1 1.8835 2.3964 1.2124
7 6 2.0079 -1.2121 0.0005
8 1 3.0724 -1.2210 -0.1816
9 6 1.3212 -2.4248 0.2395
10 6 0.1575 -2.4363 1.0307
11 6 -0.4990 -3.6232 1.2621
12 6 -0.0219 -4.8039 0.7132
13 6 1.1198 -4.8032 -0.0730
14 6 1.7931 -3.6279 -0.3168
15 16 3.2444 -3.6309 -1.3161
16 8 3.0901 -2.5719 -2.2509
17 8 3.4640 -4.9811 -1.7005
18 7 4.5133 -3.2106 -0.3387
19 6 4.8814 -4.0659 0.7923
20 6 6.2424 -3.6669 1.3018
21 6 6.3577 -2.9539 2.4803
22 6 7.6055 -2.5828 2.9450
23 6 8.7403 -2.9334 2.2370
24 6 8.6275 -3.6461 1.0587
25 6 7.3776 -4.0139 0.5895
26 9 7.2661 -4.7111 -0.5622
27 1 -0.4851 0.8401 -0.0004
28 1 -0.2163 -1.5179 1.4587
29 1 -1.3893 -3.6355 1.8732
30 1 -0.5437 -5.7308 0.8996
31 1 1.4822 -5.7285 -0.4958
32 1 5.0129 -2.3980 -0.5150
33 1 4.9054 -5.1063 0.4683
34 1 4.1469 -3.9504 1.5893
35 1 5.4723 -2.6824 3.0359
36 1 7.6944 -2.0219 3.8636
37 1 9.7151 -2.6465 2.6031
38 1 9.5138 -3.9167 0.5039
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000619572308.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:12:52
Heat of formation + Delta-G solvation = -80.562014 kcal
Electronic energy + Delta-G solvation = -26594.652435 eV
Core-core repulsion = 22635.871990 eV
Total energy + Delta-G solvation = -3958.780445 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.078 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-48.82039 -39.17295 -37.60477 -36.21674 -35.09721 -34.81028 -33.89306 -31.09292
-30.45127 -30.19886 -29.55996 -25.70990 -25.43875 -22.84691 -21.68974 -21.58704
-21.13049 -18.68807 -17.73603 -17.65113 -16.88674 -16.45128 -16.43986 -15.73947
-15.49774 -15.41663 -15.05981 -14.38972 -14.23634 -14.06899 -13.51190 -13.33441
-13.17727 -13.08528 -12.89342 -12.77548 -12.37602 -11.94240 -11.76138 -11.52439
-11.34353 -11.28395 -11.17534 -11.07774 -11.00405 -10.87126 -10.67344 -10.48882
-9.91076 -9.48775 -9.45257 -9.13513 -8.85534 -8.69434 -8.04788 -7.61356
-7.04053 -4.77511 0.97689 1.10450 1.59432 2.32245 2.71080 2.95819
3.01922 3.09142 3.45298 3.76192 4.03848 4.22418 4.40215 4.54444
4.64505 4.77658 4.83851 5.11006 5.20988 5.29285 5.55961 5.58105
5.70903 5.83364 5.98064 6.03746 6.04483 6.22263 6.23921 6.26850
6.32926 6.40927 6.76454 6.79578 6.94593 7.07340 7.29546 7.47182
7.51721 7.66526 7.79905 7.88333 8.27983 8.49101 8.63641 9.88617
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.010914 B = 0.005069 C = 0.004242
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2564.825111 B = 5522.513898 C = 6598.666435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.776 5.776
2 C 0.080 3.920
3 Si 0.916 3.084
4 H -0.255 1.255
5 H -0.268 1.268
6 H -0.270 1.270
7 C -0.444 4.444
8 H 0.088 0.912
9 C 0.186 3.814
10 C -0.158 4.158
11 C -0.077 4.077
12 C -0.250 4.250
13 C -0.003 4.003
14 C -0.775 4.775
15 S 2.700 3.300
16 O -0.962 6.962
17 O -0.995 6.995
18 N -1.118 6.118
19 C 0.166 3.834
20 C -0.125 4.125
21 C -0.072 4.072
22 C -0.134 4.134
23 C -0.091 4.091
24 C -0.161 4.161
25 C 0.115 3.885
26 F -0.131 7.131
27 H 0.287 0.713
28 H 0.126 0.874
29 H 0.094 0.906
30 H 0.094 0.906
31 H 0.108 0.892
32 H 0.412 0.588
33 H 0.085 0.915
34 H 0.081 0.919
35 H 0.139 0.861
36 H 0.129 0.871
37 H 0.130 0.870
38 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.146 -1.654 7.426 14.332
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.400 5.400
2 C -0.141 4.141
3 Si 0.739 3.261
4 H -0.178 1.178
5 H -0.193 1.193
6 H -0.195 1.195
7 C -0.473 4.473
8 H 0.106 0.894
9 C 0.181 3.819
10 C -0.178 4.178
11 C -0.096 4.096
12 C -0.270 4.270
13 C -0.023 4.023
14 C -0.870 4.870
15 S 2.797 3.203
16 O -0.953 6.953
17 O -0.986 6.986
18 N -0.874 5.874
19 C 0.040 3.960
20 C -0.128 4.128
21 C -0.091 4.091
22 C -0.153 4.153
23 C -0.109 4.109
24 C -0.180 4.180
25 C 0.095 3.905
26 F -0.109 7.109
27 H 0.098 0.902
28 H 0.143 0.857
29 H 0.112 0.888
30 H 0.113 0.887
31 H 0.126 0.874
32 H 0.245 0.755
33 H 0.103 0.897
34 H 0.099 0.901
35 H 0.156 0.844
36 H 0.147 0.853
37 H 0.148 0.852
38 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 11.919 -1.902 6.470 13.694
hybrid contribution -0.047 1.071 0.363 1.132
sum 11.872 -0.831 6.833 13.723
Atomic orbital electron populations
1.69786 1.07760 1.30013 1.32413 1.25953 0.94882 1.01847 0.91418
0.86116 0.81164 0.79991 0.78844 1.17792 1.19316 1.19479 1.19890
0.96704 0.90744 1.39920 0.89438 1.17012 0.90278 0.89703 0.84896
1.21523 0.98157 0.96797 1.01297 1.20911 0.97505 0.93501 0.97646
1.20498 1.01046 0.96989 1.08491 1.20262 0.93623 0.95119 0.93315
1.29865 1.25561 1.00789 1.30815 1.01132 0.73185 0.72489 0.73465
1.93546 1.85862 1.56303 1.59578 1.93452 1.85988 1.37388 1.81738
1.55733 1.50766 1.35828 1.45075 1.19956 0.91834 0.94710 0.89519
1.20065 0.94454 1.01694 0.96576 1.21126 0.98465 0.95047 0.94472
1.21216 0.92263 1.01061 1.00715 1.21014 0.99089 0.96877 0.93961
1.21142 0.96134 1.02176 0.98523 1.17653 0.93963 0.95205 0.83722
1.91545 1.96898 1.76151 1.46341 0.90191 0.85667 0.88824 0.88731
0.87389 0.75516 0.89713 0.90094 0.84356 0.85285 0.85230 0.84845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -18.92 10.84 55.55 0.60 -18.32 16
2 C 0.08 1.91 5.25 -17.34 -0.09 1.81 16
3 Si 0.92 17.87 29.57 -169.99 -5.03 12.85 16
4 H -0.25 -4.85 7.11 56.52 0.40 -4.45 16
5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16
6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16
7 C -0.44 -10.99 7.63 -37.74 -0.29 -11.27 16
8 H 0.09 2.03 5.83 -52.49 -0.31 1.72 16
9 C 0.19 4.66 5.55 -106.82 -0.59 4.07 16
10 C -0.16 -3.84 8.66 -38.88 -0.34 -4.18 16
11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16
12 C -0.25 -5.40 10.05 -39.28 -0.39 -5.80 16
13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16
14 C -0.77 -18.39 5.90 -38.88 -0.23 -18.62 16
15 S 2.70 59.94 4.96 -107.50 -0.53 59.41 16
16 O -0.96 -24.29 16.52 -57.17 -0.94 -25.24 16
17 O -1.00 -23.15 16.53 -57.17 -0.94 -24.10 16
18 N -1.12 -20.10 5.13 -11.66 -0.06 -20.16 16
19 C 0.17 2.57 6.00 -5.19 -0.03 2.54 16
20 C -0.13 -1.68 5.28 -104.56 -0.55 -2.23 16
21 C -0.07 -0.81 9.67 -39.59 -0.38 -1.20 16
22 C -0.13 -1.26 10.04 -39.57 -0.40 -1.66 16
23 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16
24 C -0.16 -1.71 10.03 -39.52 -0.40 -2.11 16
25 C 0.11 1.53 7.25 -39.42 -0.29 1.25 16
26 F -0.13 -2.02 16.76 2.25 0.04 -1.98 16
27 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16
28 H 0.13 3.07 6.21 -52.49 -0.33 2.74 16
29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16
30 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16
31 H 0.11 2.26 7.32 -52.49 -0.38 1.88 16
32 H 0.41 6.83 8.47 -34.47 -0.29 6.54 16
33 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16
34 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16
35 H 0.14 1.40 8.00 -52.49 -0.42 0.98 16
36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16
37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16
38 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16
LS Contribution 342.67 15.07 5.16 5.16
Total: -1.00 -30.98 342.67 -10.65 -41.63
By element:
Atomic # 1 Polarization: 15.68 SS G_CDS: -3.79 Total: 11.88 kcal
Atomic # 6 Polarization: -35.99 SS G_CDS: -5.15 Total: -41.15 kcal
Atomic # 7 Polarization: -39.02 SS G_CDS: 0.54 Total: -38.47 kcal
Atomic # 8 Polarization: -47.45 SS G_CDS: -1.89 Total: -49.34 kcal
Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal
Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal
Atomic # 16 Polarization: 59.94 SS G_CDS: -0.53 Total: 59.41 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -30.98 -10.65 -41.63 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619572308.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.933 kcal
(2) G-P(sol) polarization free energy of solvation -30.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds