Wall clock time and date at job start Tue Mar 31 2020 18:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76198 * 99.99991 * 2 1 4 4 N 1.30829 * 125.15023 * 359.95752 * 3 2 1 5 5 C 1.35963 * 109.51071 * 180.02562 * 4 3 2 6 6 C 1.41529 * 126.48339 * 179.97438 * 5 4 3 7 7 O 1.21755 * 119.99726 * 179.97438 * 6 5 4 8 8 O 1.35024 * 120.00388 * 359.97438 * 6 5 4 9 9 C 1.42900 * 117.00563 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47555 * 179.97438 * 9 8 6 11 11 O 1.21294 * 119.99836 * 359.97438 * 10 9 8 12 12 N 1.34767 * 119.99942 * 179.97438 * 10 9 8 13 13 C 1.37104 * 120.00113 * 179.97438 * 12 10 9 14 14 H 1.08002 * 119.99593 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00202 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00013 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00099 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47071 * 59.99725 * 17 15 13 19 19 H 1.48491 * 109.47319 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46583 * 299.99987 * 17 15 13 21 21 C 1.40067 * 107.02787 * 359.97438 * 5 4 3 22 22 C 1.40225 * 133.44629 * 179.97438 * 21 5 4 23 23 C 1.36306 * 119.22127 * 180.02562 * 22 21 5 24 24 C 1.40480 * 119.60891 * 0.02562 * 23 22 21 25 25 C 1.34963 * 120.46756 * 0.24444 * 24 23 22 26 26 N 1.36720 * 120.58877 * 359.50843 * 25 24 23 27 27 H 1.08997 * 109.47630 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46971 * 300.00265 * 1 2 3 29 29 H 1.09004 * 109.47065 * 60.00202 * 1 2 3 30 30 H 1.08995 * 109.46619 * 299.99973 * 9 8 6 31 31 H 1.09001 * 109.46642 * 59.99064 * 9 8 6 32 32 H 0.97005 * 120.00467 * 0.02562 * 12 10 9 33 33 H 0.97001 * 119.99601 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.38916 * 0.02683 * 22 21 5 35 35 H 1.07999 * 120.20123 * 179.97438 * 23 22 21 36 36 H 1.07994 * 119.76890 * 179.97438 * 24 23 22 37 37 H 1.07996 * 119.70922 * 179.70048 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.1933 2.6627 -0.0008 5 6 1.7816 3.8885 -0.0011 6 6 1.1198 5.1395 -0.0024 7 8 1.7673 6.1707 -0.0021 8 8 -0.2295 5.1896 -0.0041 9 6 -0.8307 6.4860 -0.0048 10 6 -2.3309 6.3441 -0.0073 11 8 -2.8357 5.2412 -0.0088 12 7 -3.1117 7.4426 -0.0078 13 6 -4.4766 7.3135 -0.0106 14 1 -4.9261 6.3315 -0.0128 15 6 -5.2816 8.4461 -0.0117 16 7 -4.7346 9.6409 -0.0095 17 14 -7.1413 8.2702 -0.0148 18 1 -7.5702 7.5263 1.1969 19 1 -7.7660 9.6173 -0.0161 20 1 -7.5661 7.5269 -1.2282 21 6 3.1665 3.6788 0.0002 22 6 4.2723 4.5410 0.0001 23 6 5.5285 4.0119 0.0010 24 6 5.6942 2.6169 0.0016 25 6 4.6198 1.8002 -0.0038 26 7 3.3536 2.3161 0.0002 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.5184 7.0317 0.8856 31 1 -0.5161 7.0318 -0.8943 32 1 -2.7080 8.3247 -0.0070 33 1 -5.2966 10.4315 -0.0107 34 1 4.1304 5.6116 -0.0008 35 1 6.3915 4.6613 0.0006 36 1 6.6883 2.1950 0.0020 37 1 4.7613 0.7296 -0.0082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:48 Heat of formation + Delta-G solvation = -25.945424 kcal Electronic energy + Delta-G solvation = -25107.030918 eV Core-core repulsion = 21170.538788 eV Total energy + Delta-G solvation = -3936.492130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.13075 -40.10367 -38.08048 -37.78008 -36.05646 -33.90799 -33.83546 -31.49954 -31.29626 -29.74462 -28.90582 -27.98745 -25.01278 -24.39665 -23.95223 -23.07209 -20.72315 -19.48879 -18.97775 -17.99928 -17.34989 -17.24931 -16.74608 -16.58389 -16.02768 -15.96675 -15.78430 -15.45902 -14.78847 -14.53186 -14.33302 -13.90259 -13.88992 -13.72625 -13.01506 -12.91466 -12.75968 -12.53732 -12.19492 -12.19387 -11.88474 -11.55657 -11.10739 -11.09106 -11.04716 -10.83036 -10.48683 -10.43610 -10.22253 -10.21308 -10.05222 -9.51787 -8.88736 -8.40651 -8.00014 -7.46217 -6.42698 -3.84298 0.16068 0.58736 0.80125 1.78912 1.79341 2.16488 2.79553 2.96384 3.20696 3.26864 3.32462 3.35874 3.84113 3.94757 4.11835 4.19065 4.29866 4.41814 4.58137 4.79962 4.96358 5.09335 5.09636 5.18002 5.22688 5.32779 5.56200 5.60202 5.72558 5.76216 5.81705 5.92343 6.00024 6.15668 6.44388 6.72481 7.09652 7.54515 7.97245 8.09107 8.57950 9.14934 9.48189 9.99230 10.74780 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.002544 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.153142 B =11002.400720 C =12551.104871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.023 6.023 3 C 0.151 3.849 4 N -0.378 5.378 5 C -0.046 4.046 6 C 0.555 3.445 7 O -0.520 6.520 8 O -0.303 6.303 9 C 0.058 3.942 10 C 0.442 3.558 11 O -0.572 6.572 12 N -0.555 5.555 13 C -0.301 4.301 14 H 0.105 0.895 15 C 0.024 3.976 16 N -0.899 5.899 17 Si 0.934 3.066 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.105 3.895 22 C -0.076 4.076 23 C -0.100 4.100 24 C -0.132 4.132 25 C 0.061 3.939 26 N -0.349 5.349 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.395 0.605 33 H 0.273 0.727 34 H 0.165 0.835 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.441 -15.821 0.020 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.205 5.795 3 C -0.214 4.214 4 N -0.097 5.097 5 C -0.179 4.179 6 C 0.401 3.599 7 O -0.410 6.410 8 O -0.216 6.216 9 C -0.020 4.020 10 C 0.226 3.774 11 O -0.456 6.456 12 N -0.193 5.193 13 C -0.430 4.430 14 H 0.123 0.877 15 C -0.178 4.178 16 N -0.540 5.540 17 Si 0.761 3.239 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.010 4.010 22 C -0.095 4.095 23 C -0.122 4.122 24 C -0.153 4.153 25 C -0.061 4.061 26 N -0.021 5.021 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 22.885 -17.250 0.022 28.659 hybrid contribution -0.646 1.904 -0.002 2.010 sum 22.240 -15.346 0.020 27.021 Atomic orbital electron populations 1.23573 0.91316 1.06764 1.08378 1.85126 1.10294 0.90167 1.93926 1.25105 0.79987 1.00896 1.15452 1.71084 1.28722 0.97478 1.12381 1.18364 0.88075 0.91222 1.20239 1.17978 0.81483 0.87098 0.73355 1.90865 1.67178 1.34822 1.48178 1.86342 1.19540 1.32994 1.82767 1.22385 0.93841 0.82501 1.03318 1.19331 0.86415 0.85970 0.85647 1.90568 1.74648 1.25521 1.54823 1.41688 1.06578 1.06786 1.64240 1.19672 0.80292 0.94963 1.48039 0.87738 1.25291 1.00925 0.94528 0.97073 1.69611 1.36755 0.97651 1.49999 0.85870 0.81691 0.77228 0.79153 1.19796 1.20917 1.19803 1.19215 0.94974 0.82648 1.04146 1.20886 0.89265 1.01034 0.98354 1.21330 0.97633 0.94954 0.98238 1.20976 0.98609 0.93689 1.01993 1.21831 0.80921 1.00746 1.02602 1.42751 1.06118 1.06952 1.46323 0.87173 0.88415 0.88408 0.89780 0.89784 0.77177 0.91674 0.81749 0.83541 0.82602 0.81098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.97 101.05 1.01 -0.25 16 2 S -0.02 -0.22 22.80 -107.50 -2.45 -2.67 16 3 C 0.15 2.02 8.01 -88.54 -0.71 1.31 16 4 N -0.38 -6.41 10.55 -10.55 -0.11 -6.52 16 5 C -0.05 -0.79 6.89 -84.10 -0.58 -1.37 16 6 C 0.55 10.57 7.72 31.99 0.25 10.82 16 7 O -0.52 -9.73 15.34 -19.46 -0.30 -10.03 16 8 O -0.30 -6.58 9.62 -48.15 -0.46 -7.05 16 9 C 0.06 1.21 5.86 36.00 0.21 1.42 16 10 C 0.44 11.31 7.86 -10.99 -0.09 11.23 16 11 O -0.57 -16.82 16.08 -14.36 -0.23 -17.05 16 12 N -0.56 -14.64 5.29 -10.97 -0.06 -14.70 16 13 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 14 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 17 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C 0.11 1.44 6.70 -83.87 -0.56 0.87 16 22 C -0.08 -0.79 9.68 -39.53 -0.38 -1.17 16 23 C -0.10 -0.67 10.08 -39.43 -0.40 -1.06 16 24 C -0.13 -0.72 9.98 -39.90 -0.40 -1.12 16 25 C 0.06 0.45 10.83 -16.54 -0.18 0.27 16 26 N -0.35 -4.09 2.96 -60.91 -0.18 -4.27 16 27 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 29 H 0.10 1.07 8.14 -51.91 -0.42 0.64 16 30 H 0.08 1.59 8.13 -51.93 -0.42 1.17 16 31 H 0.08 1.59 8.13 -51.93 -0.42 1.16 16 32 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.17 1.72 7.08 -52.49 -0.37 1.35 16 35 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.16 0.28 8.06 -52.49 -0.42 -0.15 16 37 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -36.35 350.60 -8.46 -44.81 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.59 Total: 7.18 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -2.07 Total: 12.80 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.37 Total: -49.51 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.99 Total: -34.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.45 Total: -2.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.35 -8.46 -44.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.868 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds