Wall clock time and date at job start Tue Mar 31 2020 18:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76198 * 99.99991 * 2 1 4 4 N 1.30829 * 125.15023 * 359.95752 * 3 2 1 5 5 C 1.35963 * 109.51071 * 180.02562 * 4 3 2 6 6 C 1.41529 * 126.48339 * 179.97438 * 5 4 3 7 7 O 1.21755 * 119.99726 * 179.97438 * 6 5 4 8 8 O 1.35024 * 120.00388 * 359.97438 * 6 5 4 9 9 C 1.42900 * 117.00563 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47555 * 179.97438 * 9 8 6 11 11 O 1.21294 * 119.99836 * 359.97438 * 10 9 8 12 12 N 1.34767 * 119.99942 * 179.97438 * 10 9 8 13 13 C 1.37104 * 120.00113 * 179.97438 * 12 10 9 14 14 H 1.08002 * 119.99593 * 359.97438 * 13 12 10 15 15 C 1.38944 * 120.00202 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00013 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00099 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47071 * 59.99725 * 17 15 13 19 19 H 1.48491 * 109.47319 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46583 * 299.99987 * 17 15 13 21 21 C 1.40067 * 107.02787 * 359.97438 * 5 4 3 22 22 C 1.40225 * 133.44629 * 179.97438 * 21 5 4 23 23 C 1.36306 * 119.22127 * 180.02562 * 22 21 5 24 24 C 1.40480 * 119.60891 * 0.02562 * 23 22 21 25 25 C 1.34963 * 120.46756 * 0.24444 * 24 23 22 26 26 N 1.36720 * 120.58877 * 359.50843 * 25 24 23 27 27 H 1.08997 * 109.47630 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46971 * 300.00265 * 1 2 3 29 29 H 1.09004 * 109.47065 * 60.00202 * 1 2 3 30 30 H 1.08995 * 109.46619 * 299.99973 * 9 8 6 31 31 H 1.09001 * 109.46642 * 59.99064 * 9 8 6 32 32 H 0.97005 * 120.00467 * 0.02562 * 12 10 9 33 33 H 0.97001 * 119.99601 * 179.97438 * 16 15 13 34 34 H 1.07998 * 120.38916 * 0.02683 * 22 21 5 35 35 H 1.07999 * 120.20123 * 179.97438 * 23 22 21 36 36 H 1.07994 * 119.76890 * 179.97438 * 24 23 22 37 37 H 1.07996 * 119.70922 * 179.70048 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.1933 2.6627 -0.0008 5 6 1.7816 3.8885 -0.0011 6 6 1.1198 5.1395 -0.0024 7 8 1.7673 6.1707 -0.0021 8 8 -0.2295 5.1896 -0.0041 9 6 -0.8307 6.4860 -0.0048 10 6 -2.3309 6.3441 -0.0073 11 8 -2.8357 5.2412 -0.0088 12 7 -3.1117 7.4426 -0.0078 13 6 -4.4766 7.3135 -0.0106 14 1 -4.9261 6.3315 -0.0128 15 6 -5.2816 8.4461 -0.0117 16 7 -4.7346 9.6409 -0.0095 17 14 -7.1413 8.2702 -0.0148 18 1 -7.5702 7.5263 1.1969 19 1 -7.7660 9.6173 -0.0161 20 1 -7.5661 7.5269 -1.2282 21 6 3.1665 3.6788 0.0002 22 6 4.2723 4.5410 0.0001 23 6 5.5285 4.0119 0.0010 24 6 5.6942 2.6169 0.0016 25 6 4.6198 1.8002 -0.0038 26 7 3.3536 2.3161 0.0002 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.5184 7.0317 0.8856 31 1 -0.5161 7.0318 -0.8943 32 1 -2.7080 8.3247 -0.0070 33 1 -5.2966 10.4315 -0.0107 34 1 4.1304 5.6116 -0.0008 35 1 6.3915 4.6613 0.0006 36 1 6.6883 2.1950 0.0020 37 1 4.7613 0.7296 -0.0082 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731245083.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:47 Heat of formation + Delta-G solvation = -49.913146 kcal Electronic energy + Delta-G solvation = -25108.070236 eV Core-core repulsion = 21170.538788 eV Total energy + Delta-G solvation = -3937.531449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.02906 -41.59426 -40.02733 -38.62051 -37.60150 -36.05349 -34.68466 -33.44046 -32.29859 -30.89217 -29.88455 -29.34335 -26.79215 -25.37874 -25.09654 -23.92431 -21.96452 -21.47530 -20.10516 -19.95700 -18.58920 -18.25655 -18.00615 -17.62960 -17.22756 -17.21385 -17.16063 -16.47501 -16.36947 -15.81049 -15.66885 -15.55825 -15.23289 -14.70776 -14.56534 -14.07110 -13.70143 -13.65739 -13.56863 -13.35570 -13.26559 -12.95066 -12.81663 -12.50996 -12.13358 -12.01959 -11.98453 -11.87280 -11.83123 -11.74803 -11.59293 -10.83390 -10.53277 -10.14092 -9.68517 -8.53739 -8.29779 -6.04881 -0.65808 -0.15512 -0.04535 0.67799 0.95641 1.27099 1.36085 1.40762 1.51553 1.65043 1.83962 1.94723 2.29576 2.31751 3.01841 3.11065 3.24043 3.28927 3.54217 3.80342 3.81887 3.99657 4.07907 4.12394 4.19250 4.23903 4.27987 4.55176 4.59445 4.85947 4.94394 4.96390 5.12297 5.24947 5.32859 5.35010 5.72144 5.86498 6.09265 6.44959 6.68922 7.00607 7.36992 7.91544 8.63372 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.002544 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.153142 B =11002.400720 C =12551.104871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S 0.027 5.973 3 C 0.135 3.865 4 N -0.422 5.422 5 C -0.122 4.122 6 C 0.553 3.447 7 O -0.532 6.532 8 O -0.333 6.333 9 C 0.070 3.930 10 C 0.437 3.563 11 O -0.618 6.618 12 N -0.556 5.556 13 C -0.341 4.341 14 H 0.083 0.917 15 C -0.009 4.009 16 N -0.915 5.915 17 Si 1.000 3.000 18 H -0.270 1.270 19 H -0.266 1.266 20 H -0.270 1.270 21 C 0.121 3.879 22 C -0.123 4.123 23 C -0.051 4.051 24 C -0.117 4.117 25 C 0.054 3.946 26 N -0.350 5.350 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.400 0.600 33 H 0.282 0.718 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.211 0.789 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.859 -17.113 0.022 31.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.254 5.746 3 C -0.230 4.230 4 N -0.141 5.141 5 C -0.252 4.252 6 C 0.402 3.598 7 O -0.424 6.424 8 O -0.248 6.248 9 C -0.008 4.008 10 C 0.223 3.777 11 O -0.504 6.504 12 N -0.193 5.193 13 C -0.469 4.469 14 H 0.101 0.899 15 C -0.209 4.209 16 N -0.555 5.555 17 Si 0.823 3.177 18 H -0.195 1.195 19 H -0.191 1.191 20 H -0.195 1.195 21 C 0.004 3.996 22 C -0.143 4.143 23 C -0.073 4.073 24 C -0.137 4.137 25 C -0.068 4.068 26 N -0.022 5.022 27 H 0.162 0.838 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.228 0.772 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 26.323 -18.495 0.023 32.171 hybrid contribution -1.342 2.171 -0.002 2.553 sum 24.981 -16.324 0.021 29.842 Atomic orbital electron populations 1.23617 0.92160 1.08328 1.06543 1.84780 1.09330 0.86985 1.93488 1.25728 0.80346 1.02106 1.14862 1.70909 1.30886 0.98316 1.13995 1.18251 0.89813 0.90540 1.26554 1.18294 0.80237 0.88238 0.73019 1.90811 1.66757 1.35210 1.49586 1.86328 1.21604 1.33042 1.83799 1.22161 0.90406 0.83137 1.05092 1.20066 0.88374 0.85021 0.84204 1.90523 1.76089 1.27134 1.56693 1.41710 1.06325 1.07250 1.64044 1.19696 0.81545 0.94773 1.50933 0.89941 1.26165 1.05473 0.93782 0.95523 1.69673 1.38613 0.98223 1.48995 0.84893 0.75738 0.77958 0.79152 1.19467 1.19051 1.19475 1.19425 0.94308 0.84054 1.01818 1.20983 0.90055 1.00549 1.02688 1.21981 0.97057 0.96413 0.91891 1.21696 1.00267 0.92728 0.98966 1.22795 0.79478 1.03055 1.01425 1.42983 1.07198 1.06183 1.45806 0.83807 0.90262 0.90259 0.87859 0.87866 0.76511 0.90858 0.82738 0.79327 0.77221 0.77737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.97 113.37 1.13 -1.60 16 2 S 0.03 0.50 22.80 -56.49 -1.29 -0.79 16 3 C 0.14 3.70 8.01 179.62 1.44 5.14 16 4 N -0.42 -15.48 10.55 -187.29 -1.98 -17.46 16 5 C -0.12 -4.55 6.89 39.76 0.27 -4.27 16 6 C 0.55 22.93 7.72 68.63 0.53 23.46 16 7 O -0.53 -21.26 15.34 19.00 0.29 -20.96 16 8 O -0.33 -15.69 9.62 -52.97 -0.51 -16.20 16 9 C 0.07 3.09 5.86 71.23 0.42 3.51 16 10 C 0.44 23.72 7.86 87.66 0.69 24.41 16 11 O -0.62 -38.81 16.08 15.96 0.26 -38.55 16 12 N -0.56 -30.66 5.29 -307.00 -1.62 -32.29 16 13 C -0.34 -20.16 9.68 84.04 0.81 -19.35 16 14 H 0.08 5.17 7.16 -2.91 -0.02 5.15 16 15 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 16 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 17 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 C 0.12 3.37 6.70 39.17 0.26 3.63 16 22 C -0.12 -2.43 9.68 22.30 0.22 -2.21 16 23 C -0.05 -0.44 10.08 22.37 0.23 -0.22 16 24 C -0.12 -0.56 9.98 22.06 0.22 -0.34 16 25 C 0.05 0.57 10.83 83.18 0.90 1.47 16 26 N -0.35 -7.81 2.96 -346.63 -1.03 -8.83 16 27 H 0.14 1.77 8.14 -2.40 -0.02 1.75 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.10 4.10 8.13 -2.39 -0.02 4.08 16 31 H 0.10 4.10 8.13 -2.39 -0.02 4.08 16 32 H 0.40 20.72 7.90 -92.70 -0.73 19.99 16 33 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.16 3.30 7.08 -2.91 -0.02 3.28 16 35 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 36 H 0.21 -1.08 8.06 -2.91 -0.02 -1.10 16 37 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -86.84 350.60 4.43 -82.41 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.41 Total: 23.48 kcal Atomic # 6 Polarization: 26.03 SS G_CDS: 7.58 Total: 33.61 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -4.34 Total: -108.67 kcal Atomic # 8 Polarization: -75.75 SS G_CDS: 0.04 Total: -75.72 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -1.29 Total: -0.79 kcal Total: -86.84 4.43 -82.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245083.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.495 kcal (2) G-P(sol) polarization free energy of solvation -86.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds