Wall clock time and date at job start Tue Mar 31 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48495 * 109.47493 * 240.00157 * 3 2 1 5 5 H 1.48503 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47186 * 119.99711 * 3 2 1 7 7 C 1.38648 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99865 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00413 * 174.97324 * 9 7 2 11 11 C 1.38947 * 120.03446 * 185.37596 * 10 9 7 12 12 C 1.38123 * 120.07208 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.13924 * 359.97438 * 12 11 10 14 14 C 1.38925 * 120.06392 * 0.02562 * 13 12 11 15 15 N 1.39922 * 120.03457 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99696 * 35.13289 * 15 14 13 17 17 O 1.21286 * 120.00247 * 355.49295 * 16 15 14 18 18 C 1.50703 * 119.99649 * 175.49865 * 16 15 14 19 19 C 1.53003 * 109.46705 * 179.97438 * 18 16 15 20 20 H 1.09001 * 110.54850 * 56.40249 * 19 18 16 21 21 S 1.82373 * 110.61101 * 293.54228 * 19 18 16 22 22 C 1.77248 * 94.48990 * 241.33579 * 21 19 18 23 23 N 1.30277 * 126.27467 * 180.02562 * 22 21 19 24 24 N 1.37057 * 107.44752 * 359.97438 * 22 21 19 25 25 C 1.32217 * 120.28079 * 0.02562 * 24 22 21 26 26 O 1.21252 * 122.87976 * 179.97438 * 25 24 22 27 27 C 1.38732 * 120.03121 * 5.64928 * 10 9 7 28 28 H 0.97008 * 120.00104 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.96597 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.93295 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.96672 * 180.02562 * 13 12 11 32 32 H 0.96998 * 120.00119 * 215.12793 * 15 14 13 33 33 H 1.08992 * 109.47559 * 59.99838 * 18 16 15 34 34 H 1.09002 * 109.47209 * 299.99328 * 18 16 15 35 35 H 0.97000 * 119.99708 * 179.97438 * 23 22 21 36 36 H 0.96995 * 119.86345 * 179.72366 * 24 22 21 37 37 H 1.08005 * 120.07133 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6966 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 -0.1071 11 6 1.4356 -4.7350 -0.2260 12 6 2.1830 -5.8915 -0.3339 13 6 3.5635 -5.8290 -0.3245 14 6 4.2039 -4.6018 -0.2058 15 7 5.6016 -4.5393 -0.1958 16 6 6.3198 -5.3948 -0.9499 17 8 5.7593 -6.2712 -1.5733 18 6 7.8195 -5.2626 -1.0182 19 6 8.3859 -6.3487 -1.9350 20 1 7.9289 -6.2920 -2.9230 21 16 8.1339 -8.0008 -1.2049 22 6 9.8639 -8.3722 -1.1016 23 7 10.3902 -9.4710 -0.6402 24 7 10.5465 -7.2920 -1.5973 25 6 9.8890 -6.2327 -2.0374 26 8 10.4446 -5.2521 -2.4847 27 6 3.4557 -3.4388 -0.0916 28 1 -0.4851 0.8401 -0.0004 29 1 0.3569 -4.7871 -0.2341 30 1 1.6875 -6.8466 -0.4267 31 1 4.1452 -6.7350 -0.4094 32 1 6.0537 -3.8801 0.3538 33 1 8.2401 -5.3753 -0.0191 34 1 8.0800 -4.2807 -1.4135 35 1 11.3541 -9.5785 -0.6264 36 1 11.5160 -7.3028 -1.6212 37 1 3.9512 -2.4840 0.0048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742548133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:16 Heat of formation + Delta-G solvation = -31.313685 kcal Electronic energy + Delta-G solvation = -24951.850090 eV Core-core repulsion = 21015.125174 eV Total energy + Delta-G solvation = -3936.724915 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43488 -40.33032 -38.74840 -37.59800 -36.57142 -34.38112 -34.09928 -32.87624 -32.25962 -29.54758 -28.71729 -26.62201 -25.30536 -24.38600 -22.51253 -21.85943 -21.28480 -20.19692 -18.81380 -18.66393 -18.01944 -17.89123 -16.98679 -16.64635 -16.28724 -15.83467 -15.59240 -15.09215 -15.03337 -14.42628 -14.33892 -13.91005 -13.75084 -13.57291 -13.40693 -13.18465 -13.01546 -12.53576 -12.32766 -11.81917 -11.65231 -11.54267 -11.25616 -11.16647 -11.03879 -10.83830 -10.50691 -10.36364 -10.19313 -9.98765 -9.68450 -9.46834 -8.84086 -8.51520 -7.81499 -7.21558 -6.47786 -4.07964 0.48942 0.81604 1.18424 1.85438 2.00839 2.22606 2.32775 2.63571 2.98861 3.09347 3.11395 3.13892 3.38156 3.89429 3.93033 4.40564 4.53434 4.60678 4.63059 4.94572 5.04491 5.05465 5.26097 5.43721 5.66750 5.95407 5.97644 5.99426 6.16817 6.22753 6.58438 6.80721 6.87481 6.92131 7.06489 7.27075 7.29694 7.38033 7.55042 7.74579 7.95601 8.09797 8.97303 9.67113 10.70034 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.002520 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.482066 B =11108.958398 C =12402.296625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.090 0.910 9 O -0.175 6.175 10 C 0.167 3.833 11 C -0.197 4.197 12 C -0.065 4.065 13 C -0.203 4.203 14 C 0.174 3.826 15 N -0.662 5.662 16 C 0.514 3.486 17 O -0.512 6.512 18 C -0.121 4.121 19 C -0.106 4.106 20 H 0.163 0.837 21 S 0.047 5.953 22 C 0.369 3.631 23 N -0.661 5.661 24 N -0.692 5.692 25 C 0.536 3.464 26 O -0.482 6.482 27 C -0.255 4.255 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.409 0.591 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.346 0.654 36 H 0.412 0.588 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.149 -11.993 -0.995 23.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.112 3.888 11 C -0.216 4.216 12 C -0.084 4.084 13 C -0.224 4.224 14 C 0.081 3.919 15 N -0.306 5.306 16 C 0.300 3.700 17 O -0.387 6.387 18 C -0.163 4.163 19 C -0.239 4.239 20 H 0.181 0.819 21 S 0.272 5.728 22 C -0.021 4.021 23 N -0.295 5.295 24 N -0.347 5.347 25 C 0.318 3.682 26 O -0.352 6.352 27 C -0.276 4.276 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.244 0.756 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.251 0.749 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.069 -13.291 -1.014 22.454 hybrid contribution 3.208 2.372 -0.351 4.005 sum 21.277 -10.919 -1.365 23.954 Atomic orbital electron populations 1.70024 1.05940 1.27806 1.45851 1.25272 0.95833 0.98791 0.96539 0.85803 0.78739 0.79899 0.79097 1.19536 1.20260 1.19544 1.21217 0.91625 0.80859 1.53278 0.89279 1.84008 1.33973 1.11334 1.78562 1.19067 0.89408 0.88207 0.92097 1.20292 0.99813 0.90317 1.11225 1.20569 0.93170 0.96922 0.97722 1.20687 0.94356 0.96163 1.11149 1.17392 0.80492 0.93876 1.00103 1.43327 1.05774 1.36290 1.45208 1.20202 0.88650 0.81935 0.79224 1.90747 1.71651 1.32635 1.43674 1.21621 0.93562 0.99785 1.01310 1.24045 0.95285 0.97432 1.07105 0.81947 1.88032 0.93395 1.14741 1.76639 1.25159 0.99285 0.85638 0.91989 1.70061 1.20355 1.16160 1.22943 1.44567 1.12538 1.17119 1.60506 1.19605 0.89319 0.82393 0.76892 1.90878 1.71925 1.30154 1.42268 1.20812 0.93998 0.97140 1.15673 0.91928 0.86371 0.86549 0.85658 0.75612 0.87027 0.85709 0.83296 0.74930 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.62 9.49 30.88 0.29 -10.33 16 8 H 0.09 2.19 5.20 -52.48 -0.27 1.91 16 9 O -0.18 -4.86 9.76 0.05 0.00 -4.86 16 10 C 0.17 3.89 6.64 -39.14 -0.26 3.63 16 11 C -0.20 -4.08 9.99 -39.36 -0.39 -4.47 16 12 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 13 C -0.20 -3.62 8.70 -39.34 -0.34 -3.97 16 14 C 0.17 3.05 6.29 -83.72 -0.53 2.53 16 15 N -0.66 -8.50 5.34 -9.88 -0.05 -8.56 16 16 C 0.51 6.05 7.43 -10.99 -0.08 5.97 16 17 O -0.51 -7.59 12.43 5.55 0.07 -7.52 16 18 C -0.12 -0.91 5.28 -27.88 -0.15 -1.05 16 19 C -0.11 -0.84 2.86 -27.68 -0.08 -0.92 16 20 H 0.16 1.28 8.03 -51.93 -0.42 0.86 16 21 S 0.05 0.43 21.49 -107.50 -2.31 -1.88 16 22 C 0.37 2.90 8.92 -88.69 -0.79 2.11 16 23 N -0.66 -5.49 14.13 30.84 0.44 -5.05 16 24 N -0.69 -4.40 5.22 -12.31 -0.06 -4.46 16 25 C 0.54 4.28 7.53 -11.91 -0.09 4.19 16 26 O -0.48 -5.16 18.01 5.58 0.10 -5.06 16 27 C -0.25 -5.20 9.08 -39.21 -0.36 -5.56 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.16 6.22 -52.49 -0.33 1.83 16 32 H 0.41 3.92 8.82 -40.82 -0.36 3.56 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.35 2.01 8.92 -40.82 -0.36 1.65 16 36 H 0.41 1.76 8.91 -40.82 -0.36 1.40 16 37 H 0.13 2.58 5.64 -52.48 -0.30 2.28 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -33.94 341.12 -7.44 -41.38 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.23 Total: 8.49 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.27 Total: -8.46 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 1.08 Total: -42.08 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.17 Total: -17.44 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.31 Total: -1.88 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.94 -7.44 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742548133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.064 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds