Wall clock time and date at job start Tue Mar 31 2020 18:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48495 * 109.47493 * 240.00157 * 3 2 1 5 5 H 1.48503 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47186 * 119.99711 * 3 2 1 7 7 C 1.38648 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99865 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00312 * 359.97438 * 7 2 1 10 10 C 1.35755 * 117.00413 * 174.97324 * 9 7 2 11 11 C 1.38947 * 120.03446 * 185.37596 * 10 9 7 12 12 C 1.38123 * 120.07208 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.13924 * 359.97438 * 12 11 10 14 14 C 1.38925 * 120.06392 * 0.02562 * 13 12 11 15 15 N 1.39922 * 120.03457 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99696 * 35.13289 * 15 14 13 17 17 O 1.21286 * 120.00247 * 355.49295 * 16 15 14 18 18 C 1.50703 * 119.99649 * 175.49865 * 16 15 14 19 19 C 1.53003 * 109.46705 * 179.97438 * 18 16 15 20 20 H 1.09001 * 110.54850 * 56.40249 * 19 18 16 21 21 S 1.82373 * 110.61101 * 293.54228 * 19 18 16 22 22 C 1.77248 * 94.48990 * 241.33579 * 21 19 18 23 23 N 1.30277 * 126.27467 * 180.02562 * 22 21 19 24 24 N 1.37057 * 107.44752 * 359.97438 * 22 21 19 25 25 C 1.32217 * 120.28079 * 0.02562 * 24 22 21 26 26 O 1.21252 * 122.87976 * 179.97438 * 25 24 22 27 27 C 1.38732 * 120.03121 * 5.64928 * 10 9 7 28 28 H 0.97008 * 120.00104 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.96597 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.93295 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.96672 * 180.02562 * 13 12 11 32 32 H 0.96998 * 120.00119 * 215.12793 * 15 14 13 33 33 H 1.08992 * 109.47559 * 59.99838 * 18 16 15 34 34 H 1.09002 * 109.47209 * 299.99328 * 18 16 15 35 35 H 0.97000 * 119.99708 * 179.97438 * 23 22 21 36 36 H 0.96995 * 119.86345 * 179.72366 * 24 22 21 37 37 H 1.08005 * 120.07133 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6966 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 -0.1071 11 6 1.4356 -4.7350 -0.2260 12 6 2.1830 -5.8915 -0.3339 13 6 3.5635 -5.8290 -0.3245 14 6 4.2039 -4.6018 -0.2058 15 7 5.6016 -4.5393 -0.1958 16 6 6.3198 -5.3948 -0.9499 17 8 5.7593 -6.2712 -1.5733 18 6 7.8195 -5.2626 -1.0182 19 6 8.3859 -6.3487 -1.9350 20 1 7.9289 -6.2920 -2.9230 21 16 8.1339 -8.0008 -1.2049 22 6 9.8639 -8.3722 -1.1016 23 7 10.3902 -9.4710 -0.6402 24 7 10.5465 -7.2920 -1.5973 25 6 9.8890 -6.2327 -2.0374 26 8 10.4446 -5.2521 -2.4847 27 6 3.4557 -3.4388 -0.0916 28 1 -0.4851 0.8401 -0.0004 29 1 0.3569 -4.7871 -0.2341 30 1 1.6875 -6.8466 -0.4267 31 1 4.1452 -6.7350 -0.4094 32 1 6.0537 -3.8801 0.3538 33 1 8.2401 -5.3753 -0.0191 34 1 8.0800 -4.2807 -1.4135 35 1 11.3541 -9.5785 -0.6264 36 1 11.5160 -7.3028 -1.6212 37 1 3.9512 -2.4840 0.0048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742548133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:15 Heat of formation + Delta-G solvation = -56.661735 kcal Electronic energy + Delta-G solvation = -24952.949264 eV Core-core repulsion = 21015.125174 eV Total energy + Delta-G solvation = -3937.824089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11634 -41.48776 -40.32090 -38.28538 -38.11819 -35.66051 -34.80952 -34.20382 -33.53222 -31.01188 -30.25765 -27.62208 -27.06363 -25.01971 -23.68534 -23.44530 -22.12172 -21.36750 -19.84956 -19.47234 -19.25212 -19.23368 -18.12147 -17.42244 -17.24304 -16.85540 -16.78635 -16.56086 -16.00448 -15.89311 -15.70126 -15.47843 -14.93499 -14.78474 -14.46355 -14.10611 -14.08596 -13.85759 -13.54572 -13.18280 -13.04915 -12.75580 -12.63870 -12.42143 -12.25727 -12.13823 -11.82711 -11.42073 -11.23956 -11.02111 -10.82163 -10.81085 -10.67500 -9.32098 -9.20526 -8.85113 -8.43403 -6.12141 -0.15530 0.17972 0.42790 0.55573 0.74637 1.37704 1.38248 1.47913 1.54224 1.55136 1.61853 2.05922 2.20498 2.67960 2.87139 3.19042 3.23764 3.54096 3.68813 3.91525 4.07843 4.17450 4.37965 4.38669 4.47498 4.52148 4.68800 4.78671 4.95766 5.07882 5.14343 5.37767 5.43260 5.49967 5.69970 5.72830 6.04727 6.21324 6.23035 6.45015 6.76124 7.00987 7.08063 7.81520 8.79447 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018594 B = 0.002520 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.482066 B =11108.958398 C =12402.296625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.412 4.412 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.131 3.869 11 C -0.214 4.214 12 C -0.055 4.055 13 C -0.195 4.195 14 C 0.186 3.814 15 N -0.657 5.657 16 C 0.515 3.485 17 O -0.541 6.541 18 C -0.110 4.110 19 C -0.099 4.099 20 H 0.163 0.837 21 S 0.013 5.987 22 C 0.378 3.622 23 N -0.674 5.674 24 N -0.678 5.678 25 C 0.547 3.453 26 O -0.507 6.507 27 C -0.258 4.258 28 H 0.272 0.728 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.426 0.574 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.359 0.641 36 H 0.424 0.576 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.612 -12.724 -0.962 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.488 4.488 8 H 0.123 0.877 9 O -0.135 6.135 10 C 0.080 3.920 11 C -0.234 4.234 12 C -0.073 4.073 13 C -0.216 4.216 14 C 0.092 3.908 15 N -0.303 5.303 16 C 0.304 3.696 17 O -0.418 6.418 18 C -0.152 4.152 19 C -0.232 4.232 20 H 0.181 0.819 21 S 0.238 5.762 22 C -0.012 4.012 23 N -0.310 5.310 24 N -0.334 5.334 25 C 0.330 3.670 26 O -0.380 6.380 27 C -0.280 4.280 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.264 0.736 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.265 0.735 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.621 -14.087 -0.966 25.824 hybrid contribution 2.285 2.218 -0.393 3.209 sum 23.906 -11.869 -1.359 26.725 Atomic orbital electron populations 1.70185 1.08091 1.28806 1.48844 1.26584 0.96806 1.02778 0.95928 0.84662 0.77393 0.74278 0.79995 1.18213 1.20101 1.17792 1.21778 0.92570 0.81296 1.53162 0.87747 1.83978 1.35701 1.12506 1.81292 1.19609 0.90921 0.87951 0.93540 1.20494 1.00153 0.90568 1.12203 1.20946 0.93383 0.97302 0.95711 1.21026 0.94473 0.96770 1.09308 1.17396 0.82845 0.92705 0.97895 1.43325 1.03795 1.37276 1.45881 1.20896 0.90227 0.80655 0.77831 1.90739 1.72676 1.33765 1.44587 1.21636 0.89853 1.00640 1.03045 1.24041 0.95359 0.96613 1.07174 0.81910 1.88173 0.94916 1.16149 1.76915 1.24849 0.98628 0.85803 0.91950 1.70022 1.21609 1.16367 1.22954 1.44374 1.13140 1.16278 1.59620 1.19451 0.89110 0.82138 0.76302 1.90884 1.72285 1.31169 1.43623 1.20860 0.93104 0.98315 1.15671 0.91928 0.86689 0.83099 0.84223 0.73561 0.84203 0.83547 0.81826 0.73529 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.67 21.61 0.30 -55.29 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 3 Si 1.02 41.20 29.55 68.60 2.03 43.23 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.41 -23.04 9.49 67.92 0.64 -22.40 16 8 H 0.11 5.22 5.20 -2.91 -0.02 5.20 16 9 O -0.23 -13.35 9.76 -22.75 -0.22 -13.57 16 10 C 0.13 6.32 6.64 22.56 0.15 6.47 16 11 C -0.21 -9.04 9.99 22.41 0.22 -8.82 16 12 C -0.05 -1.89 10.03 22.23 0.22 -1.67 16 13 C -0.20 -6.54 8.70 22.43 0.20 -6.35 16 14 C 0.19 6.19 6.29 38.14 0.24 6.43 16 15 N -0.66 -14.99 5.34 -303.56 -1.62 -16.61 16 16 C 0.52 10.56 7.43 87.66 0.65 11.21 16 17 O -0.54 -14.65 12.43 -3.05 -0.04 -14.69 16 18 C -0.11 -1.25 5.28 29.85 0.16 -1.09 16 19 C -0.10 -1.30 2.86 29.98 0.09 -1.21 16 20 H 0.16 2.18 8.03 -2.39 -0.02 2.16 16 21 S 0.01 0.21 21.49 -56.49 -1.21 -1.00 16 22 C 0.38 5.03 8.92 179.67 1.60 6.64 16 23 N -0.67 -9.68 14.13 -56.36 -0.80 -10.47 16 24 N -0.68 -6.77 5.22 -312.66 -1.63 -8.40 16 25 C 0.55 7.19 7.53 88.18 0.66 7.85 16 26 O -0.51 -9.50 18.01 -2.94 -0.05 -9.55 16 27 C -0.26 -10.50 9.08 22.51 0.20 -10.29 16 28 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 29 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.14 4.39 6.22 -2.91 -0.02 4.37 16 32 H 0.43 6.79 8.82 -92.71 -0.82 5.97 16 33 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.15 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.36 3.34 8.92 -92.71 -0.83 2.51 16 36 H 0.42 2.45 8.91 -92.71 -0.83 1.62 16 37 H 0.13 5.18 5.64 -2.91 -0.02 5.16 16 Total: -1.00 -77.31 341.12 0.98 -76.33 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -1.28 Total: 24.11 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.51 Total: -14.07 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.75 Total: -90.78 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.31 Total: -37.82 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.21 Total: -1.00 kcal Total: -77.31 0.98 -76.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742548133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.669 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds