Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99787 * 2 1 4 4 H 1.48499 * 109.46650 * 275.88476 * 3 2 1 5 5 H 1.48490 * 109.47405 * 35.88793 * 3 2 1 6 6 H 1.48496 * 109.47045 * 155.88910 * 3 2 1 7 7 C 1.37875 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00119 * 347.56571 * 7 2 1 9 9 C 1.50696 * 119.99637 * 167.56248 * 7 2 1 10 10 C 1.52998 * 115.55350 * 324.44759 * 9 7 2 11 11 O 1.45199 * 109.47058 * 185.89544 * 10 9 7 12 12 C 1.34752 * 116.99922 * 175.12635 * 11 10 9 13 13 O 1.21502 * 120.00043 * 5.18010 * 12 11 10 14 14 C 1.47473 * 120.00144 * 185.18375 * 12 11 10 15 15 C 1.39815 * 120.08751 * 55.23299 * 14 12 11 16 16 C 1.38066 * 119.90002 * 179.72059 * 15 14 12 17 17 C 1.39599 * 119.98579 * 0.25905 * 16 15 14 18 18 C 1.38840 * 120.06461 * 359.97438 * 17 16 15 19 19 C 1.37776 * 120.22011 * 359.97438 * 18 17 16 20 20 N 1.48027 * 119.99570 * 180.02562 * 19 18 17 21 21 O 1.21795 * 120.00226 * 358.08747 * 20 19 18 22 22 O 1.21801 * 120.00094 * 178.08433 * 20 19 18 23 23 O 1.36354 * 108.58228 * 179.97438 * 17 16 15 24 24 C 1.43963 * 105.53914 * 342.65185 * 23 17 16 25 25 O 1.36540 * 131.43040 * 180.22826 * 16 15 14 26 26 C 1.53004 * 117.49860 * 110.12369 * 9 7 2 27 27 C 1.53006 * 117.49807 * 178.77658 * 9 7 2 28 28 H 0.97006 * 119.99918 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47065 * 65.89454 * 10 9 7 30 30 H 1.09004 * 109.47075 * 305.89301 * 10 9 7 31 31 H 1.07997 * 120.04984 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.88475 * 179.97438 * 18 17 16 33 33 H 1.09000 * 110.56168 * 268.66787 * 24 23 17 34 34 H 1.09001 * 110.56446 * 145.81294 * 24 23 17 35 35 H 1.09004 * 117.49812 * 215.00502 * 26 9 7 36 36 H 1.09001 * 117.49454 * 0.02562 * 26 9 7 37 37 H 1.09007 * 117.49529 * 359.97438 * 27 9 7 38 38 H 1.08996 * 117.50367 * 144.97401 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3722 2.1182 -1.3927 5 1 1.5143 2.6136 0.8207 6 1 3.6033 1.4076 0.5719 7 6 2.0045 -1.1940 0.0005 8 1 1.4835 -2.1183 0.2023 9 6 3.4850 -1.2094 -0.2805 10 6 3.9721 -0.1865 -1.3088 11 8 5.3812 -0.4073 -1.5809 12 6 5.9438 0.3482 -2.5444 13 8 5.3019 1.2326 -3.0755 14 6 7.3388 0.1016 -2.9545 15 6 7.7298 -1.1718 -3.3793 16 6 9.0354 -1.3970 -3.7679 17 6 9.9638 -0.3551 -3.7310 18 6 9.5756 0.9078 -3.3044 19 6 8.2740 1.1390 -2.9164 20 7 7.8653 2.4875 -2.4630 21 8 8.6875 3.3839 -2.3997 22 8 6.7068 2.7008 -2.1532 23 8 11.1680 -0.8309 -4.1586 24 6 11.0708 -2.2644 -4.0672 25 8 9.6623 -2.5228 -4.2191 26 6 4.4214 -1.5430 0.8825 27 6 4.1982 -2.5623 -0.2373 28 1 -0.4850 0.8401 -0.0004 29 1 3.8314 0.8200 -0.9148 30 1 3.4021 -0.2987 -2.2311 31 1 7.0105 -1.9768 -3.4081 32 1 10.2964 1.7116 -3.2767 33 1 11.4213 -2.6106 -3.0949 34 1 11.6356 -2.7384 -4.8700 35 1 5.3846 -1.0336 0.9152 36 1 3.9666 -1.7517 1.8509 37 1 3.5967 -3.4412 -0.0051 38 1 5.0142 -2.7239 -0.9416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = -80.380142 kcal Electronic energy + Delta-G solvation = -29146.522843 eV Core-core repulsion = 24732.624624 eV Total energy + Delta-G solvation = -4413.898219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.90333 -43.33483 -41.77487 -39.55229 -38.72484 -37.86086 -37.75908 -37.02298 -34.43363 -33.03711 -32.47399 -29.69050 -28.18814 -27.63801 -26.83823 -25.36438 -24.23929 -23.11149 -22.83859 -21.13409 -21.04981 -20.10862 -20.00112 -19.03038 -18.88242 -18.74828 -18.64358 -18.11063 -17.60937 -17.14166 -16.86770 -16.68771 -15.95507 -15.77371 -15.59426 -15.37611 -15.10461 -14.75889 -14.55469 -14.39310 -14.30566 -13.63555 -13.30532 -13.15234 -12.91108 -12.76068 -12.59050 -12.49893 -12.45654 -12.25987 -12.10769 -12.08482 -11.69205 -11.47157 -11.19409 -10.81227 -10.67489 -10.30761 -9.81443 -8.46719 -6.41929 -1.76702 -0.80434 -0.15925 -0.04771 0.75702 0.97858 1.23286 1.31476 1.33062 1.52563 1.65459 1.97615 2.17051 2.64389 2.72702 2.89864 3.09922 3.29651 3.38449 3.54564 3.83161 3.86226 3.89186 4.01933 4.07597 4.10489 4.15498 4.25918 4.41428 4.42600 4.46246 4.73397 4.89577 4.93319 4.95764 5.15185 5.27313 5.48410 5.53782 5.56637 6.16294 6.21248 6.35944 6.58131 7.17130 8.69222 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.003879 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.303494 B = 7216.993036 C = 8523.523135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.038 3.962 3 Si 0.918 3.082 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.249 1.249 7 C -0.484 4.484 8 H 0.057 0.943 9 C -0.032 4.032 10 C 0.096 3.904 11 O -0.333 6.333 12 C 0.495 3.505 13 O -0.490 6.490 14 C -0.040 4.040 15 C -0.049 4.049 16 C 0.102 3.898 17 C 0.073 3.927 18 C -0.031 4.031 19 C -0.012 4.012 20 N 0.024 4.976 21 O -0.105 6.105 22 O -0.214 6.214 23 O -0.293 6.293 24 C 0.200 3.800 25 O -0.294 6.294 26 C -0.187 4.187 27 C -0.150 4.150 28 H 0.272 0.728 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.188 0.812 32 H 0.198 0.802 33 H 0.126 0.874 34 H 0.181 0.819 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.422 -5.934 -9.602 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.163 4.163 3 Si 0.747 3.253 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.033 4.033 10 C 0.024 3.976 11 O -0.250 6.250 12 C 0.337 3.663 13 O -0.376 6.376 14 C -0.042 4.042 15 C -0.068 4.068 16 C 0.055 3.945 17 C 0.026 3.974 18 C -0.050 4.050 19 C -0.096 4.096 20 N 0.542 4.458 21 O -0.337 6.337 22 O -0.412 6.412 23 O -0.208 6.208 24 C 0.090 3.910 25 O -0.208 6.208 26 C -0.225 4.225 27 C -0.187 4.187 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.206 0.794 32 H 0.215 0.785 33 H 0.143 0.857 34 H 0.198 0.802 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 29.187 -6.383 -10.101 31.538 hybrid contribution -0.618 1.489 0.186 1.623 sum 28.569 -4.894 -9.915 30.634 Atomic orbital electron populations 1.69984 1.07581 1.28344 1.50440 1.25543 0.95114 1.01551 0.94088 0.86416 0.79281 0.80917 0.78677 1.20587 1.21264 1.17431 1.20444 0.89990 0.94120 1.47552 0.92441 1.19254 0.92430 0.95632 0.96020 1.23234 0.75680 0.99247 0.99480 1.86517 1.28121 1.58982 1.51334 1.20976 0.87663 0.79417 0.78257 1.90946 1.63804 1.29732 1.53124 1.18423 0.89695 0.93639 1.02482 1.20080 0.94804 0.94625 0.97278 1.19739 0.93530 0.86699 0.94528 1.19378 0.86344 0.93301 0.98352 1.19508 0.92784 0.97390 0.95312 1.20414 0.95470 0.82020 1.11666 1.43655 1.00666 1.02991 0.98466 1.94446 1.47451 1.37677 1.54149 1.94826 1.03008 1.88913 1.54491 1.87456 1.29529 1.23437 1.80401 1.26654 0.79137 0.76609 1.08559 1.87541 1.21202 1.33863 1.78234 1.23091 1.00283 1.04791 0.94311 1.22842 1.02191 0.92131 1.01560 0.91894 0.93143 0.91313 0.79434 0.78500 0.85681 0.80204 0.89507 0.89779 0.89478 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.96 21.45 0.30 -56.82 16 2 C 0.04 2.19 5.42 84.65 0.46 2.65 16 3 Si 0.92 47.48 24.23 68.60 1.66 49.14 16 4 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 6 H -0.25 -12.40 6.37 99.48 0.63 -11.76 16 7 C -0.48 -27.26 9.57 25.60 0.25 -27.01 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.46 16 9 C -0.03 -1.51 1.84 -52.93 -0.10 -1.61 16 10 C 0.10 4.42 4.15 71.98 0.30 4.72 16 11 O -0.33 -12.76 8.50 -56.62 -0.48 -13.24 16 12 C 0.50 18.12 6.10 70.26 0.43 18.54 16 13 O -0.49 -21.62 14.23 27.64 0.39 -21.23 16 14 C -0.04 -1.04 5.75 -20.10 -0.12 -1.15 16 15 C -0.05 -0.87 9.80 22.61 0.22 -0.65 16 16 C 0.10 1.40 7.13 22.56 0.16 1.56 16 17 C 0.07 0.95 7.16 22.74 0.16 1.11 16 18 C -0.03 -0.48 9.55 22.30 0.21 -0.27 16 19 C -0.01 -0.29 6.87 36.62 0.25 -0.04 16 20 N 0.02 0.78 4.45 -45.86 -0.20 0.58 16 21 O -0.11 -3.03 18.44 18.89 0.35 -2.68 16 22 O -0.21 -8.77 14.78 26.32 0.39 -8.38 16 23 O -0.29 -2.60 11.39 -74.34 -0.85 -3.45 16 24 C 0.20 0.51 8.88 113.37 1.01 1.52 16 25 O -0.29 -2.91 11.41 -76.53 -0.87 -3.78 16 26 C -0.19 -7.54 9.67 30.62 0.30 -7.25 16 27 C -0.15 -5.65 9.63 30.62 0.29 -5.35 16 28 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 29 H 0.05 2.55 2.65 -2.39 -0.01 2.54 16 30 H 0.07 3.24 8.10 -2.38 -0.02 3.22 16 31 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.20 2.17 7.60 -2.91 -0.02 2.15 16 33 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 34 H 0.18 -0.80 8.14 -2.39 -0.02 -0.82 16 35 H 0.09 3.24 7.85 -2.39 -0.02 3.22 16 36 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 38 H 0.11 3.39 7.47 -2.39 -0.02 3.37 16 Total: -1.00 -77.00 334.15 5.58 -71.42 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.07 Total: 1.68 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 3.83 Total: -13.23 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.10 Total: -56.24 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.07 Total: -52.76 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.66 Total: 49.14 kcal Total: -77.00 5.58 -71.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.962 kcal (2) G-P(sol) polarization free energy of solvation -76.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds