Wall clock time and date at job start Tue Mar 31 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31304 * 1 3 3 Si 1.86800 * 119.99639 * 2 1 4 4 H 1.48500 * 109.46938 * 239.99472 * 3 2 1 5 5 H 1.48494 * 109.47616 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47013 * 120.00105 * 3 2 1 7 7 C 1.38974 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99918 * 180.02562 * 7 2 1 9 9 N 1.37313 * 120.00337 * 0.02562 * 7 2 1 10 10 C 1.36600 * 126.08197 * 179.97438 * 9 7 2 11 11 C 1.35639 * 107.50329 * 180.02562 * 10 9 7 12 12 N 1.40570 * 126.07041 * 179.97438 * 11 10 9 13 13 S 1.65603 * 119.99737 * 135.00036 * 12 11 10 14 14 O 1.42100 * 106.40198 * 311.45792 * 13 12 11 15 15 O 1.42098 * 106.40233 * 178.53947 * 13 12 11 16 16 C 1.76195 * 107.21971 * 64.99622 * 13 12 11 17 17 C 1.38291 * 120.11873 * 90.00045 * 16 13 12 18 18 C 1.37929 * 120.35446 * 180.17352 * 17 16 13 19 19 C 1.39289 * 120.24278 * 0.06555 * 18 17 16 20 20 C 1.38981 * 118.85498 * 359.58943 * 19 18 17 21 21 C 1.37660 * 120.77699 * 0.54611 * 20 19 18 22 22 C 1.51649 * 106.97907 * 180.57567 * 20 19 18 23 23 C 1.54713 * 101.93881 * 15.71381 * 22 20 19 24 24 O 1.36126 * 129.87617 * 179.56466 * 19 18 17 25 25 C 1.40656 * 107.84949 * 0.22532 * 11 10 9 26 26 N 1.30929 * 108.40205 * 359.61156 * 25 11 10 27 27 H 0.96996 * 120.00306 * 0.02562 * 1 2 3 28 28 H 1.07996 * 126.24387 * 0.07161 * 10 9 7 29 29 H 0.96995 * 120.00297 * 314.99648 * 12 11 10 30 30 H 1.08007 * 119.81963 * 0.19665 * 17 16 13 31 31 H 1.07996 * 119.87833 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.98439 * 179.61905 * 21 20 19 33 33 H 1.09002 * 110.94508 * 257.54041 * 22 20 19 34 34 H 1.08997 * 110.93949 * 133.88365 * 22 20 19 35 35 H 1.09003 * 110.74698 * 92.94680 * 23 22 20 36 36 H 1.09001 * 110.74689 * 216.11069 * 23 22 20 37 37 H 1.07998 * 125.79447 * 179.77684 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1008 1.6964 -1.2124 5 1 1.2820 2.7465 -0.0006 6 1 3.1007 1.6965 1.2125 7 6 2.0079 -1.2035 0.0005 8 1 3.0879 -1.2035 0.0010 9 7 1.3214 -2.3928 0.0005 10 6 1.8753 -3.6414 0.0005 11 6 0.8583 -4.5389 0.0000 12 7 0.9894 -5.9384 -0.0007 13 16 0.0569 -6.8579 1.0128 14 8 0.1594 -6.2654 2.3003 15 8 0.3963 -8.2128 0.7515 16 6 -1.6184 -6.6578 0.5051 17 6 -2.1649 -7.5110 -0.4361 18 6 -3.4748 -7.3566 -0.8397 19 6 -4.2588 -6.3380 -0.3031 20 6 -3.7002 -5.4916 0.6473 21 6 -2.3918 -5.6464 1.0463 22 6 -4.7798 -4.5066 1.0522 23 6 -6.0574 -5.1922 0.5123 24 8 -5.5532 -6.0049 -0.5611 25 6 -0.3508 -3.8202 -0.0057 26 7 -0.0714 -2.5411 0.0001 27 1 -0.4850 0.8400 -0.0004 28 1 2.9304 -3.8719 0.0016 29 1 1.6261 -6.3656 -0.5949 30 1 -1.5629 -8.3028 -0.8571 31 1 -3.8939 -8.0276 -1.5749 32 1 -1.9690 -4.9775 1.7813 33 1 -4.6245 -3.5397 0.5735 34 1 -4.8233 -4.4000 2.1361 35 1 -6.5180 -5.8115 1.2820 36 1 -6.7651 -4.4515 0.1400 37 1 -1.3414 -4.2505 -0.0109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747406777.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:40 Heat of formation + Delta-G solvation = -11.813815 kcal Electronic energy + Delta-G solvation = -26482.103845 eV Core-core repulsion = 22546.224507 eV Total energy + Delta-G solvation = -3935.879338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24962 -41.44810 -38.68451 -38.31888 -36.97094 -36.23291 -34.81649 -33.84499 -32.28816 -31.51794 -30.36433 -29.24771 -26.71623 -24.91850 -23.81032 -23.17734 -22.46921 -21.76899 -20.59510 -19.49137 -18.70859 -18.54898 -18.31748 -17.79120 -17.45468 -17.20869 -17.02794 -16.06880 -15.63257 -15.38753 -15.27141 -15.14767 -14.96739 -14.35555 -14.20211 -14.09658 -13.84563 -13.65870 -13.48108 -13.33672 -13.20934 -13.12683 -12.86090 -12.78231 -12.73571 -12.31197 -12.12736 -12.10102 -11.93214 -11.67138 -11.17623 -10.73494 -10.15838 -10.05490 -9.58274 -8.84225 -8.47243 -6.26936 -0.66082 -0.26757 0.12083 1.30642 1.41735 1.56624 1.74662 1.86591 2.09693 2.14266 2.19661 2.36335 2.77036 2.84201 3.08947 3.17213 3.46637 3.57898 3.74361 4.06177 4.07118 4.10942 4.25752 4.37293 4.53427 4.55607 4.67553 4.73581 4.76598 4.78483 4.91653 4.94718 4.97046 5.11082 5.24029 5.34066 5.43444 5.91085 5.94140 6.09861 6.34571 6.74709 7.41885 7.60973 8.51713 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012231 B = 0.004230 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.765701 B = 6617.198526 C = 8411.144060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.000 4.000 3 Si 1.015 2.985 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.356 4.356 8 H 0.138 0.862 9 N -0.166 5.166 10 C -0.065 4.065 11 C -0.037 4.037 12 N -1.011 6.011 13 S 2.721 3.279 14 O -0.989 6.989 15 O -0.973 6.973 16 C -0.710 4.710 17 C 0.016 3.984 18 C -0.161 4.161 19 C 0.154 3.846 20 C -0.208 4.208 21 C 0.016 3.984 22 C -0.117 4.117 23 C 0.052 3.948 24 O -0.309 6.309 25 C -0.078 4.078 26 N -0.292 5.292 27 H 0.278 0.722 28 H 0.181 0.819 29 H 0.427 0.573 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 -9.775 -1.295 12.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.487 4.487 8 H 0.155 0.845 9 N 0.065 4.935 10 C -0.217 4.217 11 C -0.145 4.145 12 N -0.766 5.766 13 S 2.813 3.187 14 O -0.979 6.979 15 O -0.963 6.963 16 C -0.799 4.799 17 C -0.003 4.003 18 C -0.180 4.180 19 C 0.107 3.893 20 C -0.210 4.210 21 C -0.004 4.004 22 C -0.154 4.154 23 C -0.022 4.022 24 O -0.222 6.222 25 C -0.254 4.254 26 N -0.123 5.123 27 H 0.087 0.913 28 H 0.198 0.802 29 H 0.264 0.736 30 H 0.191 0.809 31 H 0.185 0.815 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.154 0.846 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.487 -8.954 -0.661 12.355 hybrid contribution 0.346 0.192 -0.446 0.596 sum -8.142 -8.763 -1.107 12.012 Atomic orbital electron populations 1.70339 1.08140 1.29230 1.37111 1.26759 0.96496 1.03960 0.94044 0.84702 0.77663 0.74074 0.80124 1.17879 1.20073 1.18104 1.20564 0.92978 0.80945 1.54206 0.84475 1.44847 1.03677 1.04731 1.40252 1.22330 0.99412 0.84484 1.15459 1.16703 0.92523 0.82418 1.22856 1.52016 1.55013 1.11488 1.58112 1.00841 0.73539 0.71647 0.72685 1.93533 1.86457 1.78468 1.39477 1.93537 1.83807 1.33239 1.85758 1.30606 1.24853 1.09183 1.15254 1.20957 0.94439 0.94901 0.89985 1.20668 0.93641 0.98621 1.05064 1.20137 0.84961 0.92262 0.91926 1.21115 0.96219 1.00486 1.03188 1.20020 0.92101 0.93191 0.95056 1.21979 0.91044 0.97968 1.04361 1.24220 0.95885 0.93795 0.88313 1.86818 1.22780 1.67527 1.45087 1.24306 0.98391 0.92139 1.10607 1.78097 0.91941 1.15906 1.26401 0.91259 0.80164 0.73551 0.80937 0.81496 0.85316 0.89029 0.87142 0.88008 0.84581 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.07 11.81 21.66 0.26 -44.81 16 2 C 0.00 -0.02 5.50 84.95 0.47 0.45 16 3 Si 1.02 37.52 29.55 68.60 2.03 39.55 16 4 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 5 H -0.28 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.36 -18.41 10.25 84.01 0.86 -17.55 16 8 H 0.14 6.22 7.83 -2.91 -0.02 6.20 16 9 N -0.17 -8.94 3.74 -189.98 -0.71 -9.65 16 10 C -0.07 -3.00 11.50 83.35 0.96 -2.04 16 11 C -0.04 -1.60 6.41 37.73 0.24 -1.36 16 12 N -1.01 -34.32 5.93 -51.65 -0.31 -34.63 16 13 S 2.72 92.10 5.62 -56.49 -0.32 91.78 16 14 O -0.99 -41.31 17.02 -128.00 -2.18 -43.49 16 15 O -0.97 -32.36 17.29 -128.00 -2.21 -34.57 16 16 C -0.71 -22.11 5.23 22.31 0.12 -22.00 16 17 C 0.02 0.41 9.50 22.21 0.21 0.62 16 18 C -0.16 -3.79 10.06 22.45 0.23 -3.56 16 19 C 0.15 4.07 7.04 22.70 0.16 4.23 16 20 C -0.21 -6.00 6.27 -19.52 -0.12 -6.12 16 21 C 0.02 0.52 6.33 22.16 0.14 0.66 16 22 C -0.12 -2.58 7.11 30.74 0.22 -2.36 16 23 C 0.05 0.86 8.01 72.57 0.58 1.44 16 24 O -0.31 -7.27 11.10 -94.99 -1.05 -8.32 16 25 C -0.08 -3.73 10.71 85.42 0.92 -2.82 16 26 N -0.29 -16.34 10.40 -56.45 -0.59 -16.93 16 27 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.18 6.87 8.06 -2.91 -0.02 6.85 16 29 H 0.43 11.49 8.96 -96.75 -0.87 10.62 16 30 H 0.17 3.39 7.62 -2.91 -0.02 3.37 16 31 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.13 4.67 7.19 -2.91 -0.02 4.64 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.17 7.46 4.20 -2.91 -0.01 7.45 16 Total: -1.00 -75.28 330.51 0.17 -75.10 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.28 Total: 36.36 kcal Atomic # 6 Polarization: -55.37 SS G_CDS: 4.98 Total: -50.40 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -1.35 Total: -106.02 kcal Atomic # 8 Polarization: -80.94 SS G_CDS: -5.45 Total: -86.38 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Atomic # 16 Polarization: 92.10 SS G_CDS: -0.32 Total: 91.78 kcal Total: -75.28 0.17 -75.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747406777.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.290 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds