Wall clock time and date at job start Tue Mar 31 2020 18:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21249 * 119.99998 * 2 1 4 4 C 1.47173 * 120.00154 * 180.02562 * 2 1 3 5 5 C 1.39846 * 120.17133 * 179.97438 * 4 2 1 6 6 C 1.37892 * 119.82233 * 179.97438 * 5 4 2 7 7 C 1.38406 * 120.17295 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.82617 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40089 * 336.46199 * 8 7 6 10 10 O 1.42099 * 106.40105 * 203.54296 * 8 7 6 11 11 N 1.65597 * 107.22063 * 90.00075 * 8 7 6 12 12 C 1.40575 * 120.00102 * 64.99772 * 11 8 7 13 13 C 1.40655 * 126.07116 * 314.41988 * 12 11 8 14 14 N 1.30933 * 108.39973 * 179.87501 * 13 12 11 15 15 N 1.40078 * 108.39873 * 0.38081 * 14 13 12 16 16 C 1.37313 * 126.07682 * 179.71913 * 15 14 13 17 17 H 1.07995 * 119.99965 * 180.02562 * 16 15 14 18 18 C 1.38979 * 120.00273 * 0.04331 * 16 15 14 19 19 N 1.31307 * 119.99558 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00082 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47024 * 90.00015 * 20 18 16 22 22 H 1.48499 * 109.46870 * 209.99845 * 20 18 16 23 23 H 1.48499 * 109.47142 * 329.99967 * 20 18 16 24 24 C 1.35638 * 126.07533 * 134.72480 * 12 11 8 25 25 C 1.38404 * 120.34927 * 0.23391 * 7 6 5 26 26 C 1.37889 * 120.16911 * 359.48487 * 25 7 6 27 27 H 1.09006 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47092 * 300.00017 * 1 2 3 29 29 H 1.08998 * 109.47000 * 60.00207 * 1 2 3 30 30 H 1.07998 * 120.09126 * 359.95974 * 5 4 2 31 31 H 1.07995 * 119.91246 * 180.02562 * 6 5 4 32 32 H 0.97005 * 120.00048 * 244.73214 * 11 8 7 33 33 H 1.07994 * 125.80243 * 0.03364 * 13 12 11 34 34 H 0.97004 * 119.99378 * 180.02562 * 19 18 16 35 35 H 1.07998 * 126.24259 * 359.93132 * 24 12 11 36 36 H 1.07994 * 119.91626 * 179.71941 * 25 7 6 37 37 H 1.08004 * 120.08702 * 180.23041 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2745 -0.0006 5 6 3.6413 -1.2787 -0.0011 6 6 4.3235 -2.4770 -0.0011 7 6 3.6279 -3.6735 -0.0011 8 16 4.5088 -5.1995 -0.0018 9 8 5.7916 -4.9220 -0.5466 10 8 3.6269 -6.1717 -0.5462 11 7 4.7545 -5.6244 1.5798 12 6 3.6577 -5.9308 2.4038 13 6 2.4625 -5.1954 2.4991 14 7 1.6799 -5.7891 3.3649 15 7 2.3451 -6.9175 3.8611 16 6 1.8569 -7.7988 4.7941 17 1 2.4569 -8.6400 5.1082 18 6 0.5904 -7.6085 5.3339 19 7 -0.1394 -6.5862 4.9513 20 14 -0.0740 -8.8078 6.6026 21 1 0.3034 -8.3483 7.9634 22 1 -1.5537 -8.8729 6.4948 23 1 0.5000 -10.1553 6.3582 24 6 3.5661 -6.9849 3.2525 25 6 2.2438 -3.6778 -0.0060 26 6 1.5472 -2.4878 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.1856 -0.3459 -0.0018 31 1 5.4035 -2.4819 -0.0011 32 1 5.6557 -5.6656 1.9365 33 1 2.2288 -4.2956 1.9496 34 1 -1.0232 -6.4531 5.3284 35 1 4.3207 -7.7399 3.4166 36 1 1.7081 -4.6155 -0.0105 37 1 0.4672 -2.4927 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747407638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:20 Heat of formation + Delta-G solvation = 7.649448 kcal Electronic energy + Delta-G solvation = -26031.325346 eV Core-core repulsion = 22096.289999 eV Total energy + Delta-G solvation = -3935.035347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.23892 -39.67193 -38.36217 -36.98458 -35.61469 -34.64059 -33.11958 -32.46069 -31.41364 -30.32786 -29.60421 -27.51580 -24.95153 -24.45540 -22.87723 -20.90342 -20.30702 -20.14404 -19.20227 -18.25177 -17.62807 -17.00848 -16.56431 -16.12930 -15.68287 -15.46581 -15.24385 -15.01041 -14.66452 -14.23764 -14.07154 -13.80055 -13.52051 -13.43533 -13.20457 -12.83983 -12.43029 -12.36912 -12.16314 -11.98021 -11.79720 -11.78442 -11.67110 -11.31600 -11.29093 -11.02378 -10.94266 -10.60362 -10.28598 -10.00091 -9.51607 -9.43276 -9.14598 -8.94834 -8.29127 -7.12005 -6.68705 -4.39542 0.05905 0.66606 1.16653 1.98914 2.88117 2.99465 3.04427 3.18202 3.39379 3.50131 3.73614 3.75837 3.88529 4.04926 4.38239 4.57221 4.65486 4.70924 4.82580 4.90444 5.04821 5.16207 5.22071 5.28832 5.48211 5.62198 5.80648 5.86934 5.96037 5.96204 6.05468 6.20797 6.26406 6.60559 6.67501 7.01167 7.15196 7.19720 7.45142 7.71041 8.02309 8.52577 9.20131 9.42936 10.27411 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.003900 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.841747 B = 7178.122004 C = 9078.218058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.396 3.604 3 O -0.455 6.455 4 C -0.123 4.123 5 C -0.088 4.088 6 C -0.031 4.031 7 C -0.643 4.643 8 S 2.696 3.304 9 O -0.970 6.970 10 O -0.946 6.946 11 N -1.016 6.016 12 C -0.052 4.052 13 C -0.072 4.072 14 N -0.245 5.245 15 N -0.139 5.139 16 C -0.322 4.322 17 H 0.120 0.880 18 C 0.048 3.952 19 N -0.771 5.771 20 Si 0.936 3.064 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.056 4.056 25 C -0.024 4.024 26 C -0.096 4.096 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.412 0.588 33 H 0.157 0.843 34 H 0.276 0.724 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 7.179 -6.733 10.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.274 3.726 3 O -0.330 6.330 4 C -0.124 4.124 5 C -0.107 4.107 6 C -0.050 4.050 7 C -0.729 4.729 8 S 2.785 3.215 9 O -0.960 6.960 10 O -0.935 6.935 11 N -0.771 5.771 12 C -0.160 4.160 13 C -0.249 4.249 14 N -0.076 5.076 15 N 0.093 4.907 16 C -0.454 4.454 17 H 0.137 0.863 18 C -0.170 4.170 19 N -0.397 5.397 20 Si 0.760 3.240 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.208 4.208 25 C -0.043 4.043 26 C -0.114 4.114 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.247 0.753 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.448 7.436 -6.936 10.272 hybrid contribution 0.534 0.027 0.711 0.890 sum 1.982 7.464 -6.225 9.919 Atomic orbital electron populations 1.22270 0.93203 1.05458 1.05148 1.22617 0.91993 0.87381 0.70649 1.90534 1.72194 1.34264 1.36026 1.20849 0.94851 0.95052 1.01659 1.21477 0.93234 0.98814 0.97203 1.20901 1.00503 0.90729 0.92878 1.31370 1.06700 1.20870 1.13922 1.01918 0.73234 0.73863 0.72508 1.93562 1.39780 1.85961 1.76672 1.93595 1.67063 1.56568 1.76293 1.52086 1.12984 1.83622 1.28388 1.16689 0.91065 1.00899 1.07321 1.23905 0.94548 1.02010 1.04413 1.78204 1.18247 0.97911 1.13215 1.44594 1.07483 1.15577 1.23000 1.19957 1.01556 1.06310 1.17596 0.86294 1.25642 0.95952 0.97207 0.98166 1.70192 1.09478 1.24364 1.35707 0.85798 0.78536 0.79963 0.79743 1.19545 1.20021 1.18682 1.21651 0.92271 1.02230 1.04645 1.21087 0.92205 0.99958 0.91023 1.21675 1.00805 0.91190 0.97778 0.89275 0.88355 0.88565 0.84180 0.83669 0.75279 0.82619 0.91355 0.83160 0.82745 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 10.19 36.00 0.37 -1.22 16 2 C 0.40 4.50 7.23 -30.68 -0.22 4.28 16 3 O -0.45 -6.43 17.09 5.58 0.10 -6.33 16 4 C -0.12 -1.51 5.87 -105.06 -0.62 -2.12 16 5 C -0.09 -1.11 9.60 -39.11 -0.38 -1.48 16 6 C -0.03 -0.40 9.50 -39.65 -0.38 -0.78 16 7 C -0.64 -9.46 5.22 -39.46 -0.21 -9.66 16 8 S 2.70 43.86 5.61 -107.50 -0.60 43.25 16 9 O -0.97 -16.22 17.26 -57.17 -0.99 -17.20 16 10 O -0.95 -18.44 16.98 -57.17 -0.97 -19.41 16 11 N -1.02 -16.85 5.93 32.32 0.19 -16.65 16 12 C -0.05 -1.08 6.41 -83.86 -0.54 -1.62 16 13 C -0.07 -1.62 10.72 -17.02 -0.18 -1.80 16 14 N -0.24 -6.41 10.40 30.80 0.32 -6.09 16 15 N -0.14 -3.56 3.74 -11.40 -0.04 -3.60 16 16 C -0.32 -8.03 10.25 -14.82 -0.15 -8.18 16 17 H 0.12 2.66 7.83 -52.49 -0.41 2.25 16 18 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 19 N -0.77 -20.05 11.81 55.49 0.66 -19.39 16 20 Si 0.94 17.93 29.55 -169.99 -5.02 12.91 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 24 C -0.06 -1.25 11.50 -16.36 -0.19 -1.44 16 25 C -0.02 -0.34 6.33 -39.65 -0.25 -0.59 16 26 C -0.10 -1.15 9.45 -39.10 -0.37 -1.52 16 27 H 0.09 0.57 5.61 -51.93 -0.29 0.28 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 31 H 0.15 1.61 7.60 -52.49 -0.40 1.21 16 32 H 0.41 5.59 8.96 -34.47 -0.31 5.28 16 33 H 0.16 3.02 4.26 -52.49 -0.22 2.80 16 34 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.15 2.86 8.06 -52.49 -0.42 2.43 16 36 H 0.15 2.31 7.19 -52.49 -0.38 1.93 16 37 H 0.15 1.31 5.93 -52.48 -0.31 1.00 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -33.88 335.13 -7.65 -41.52 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -3.13 Total: 11.03 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -3.21 Total: -25.07 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 1.13 Total: -45.74 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.86 Total: -42.95 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Atomic # 16 Polarization: 43.86 SS G_CDS: -0.60 Total: 43.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.88 -7.65 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747407638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.171 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds