Wall clock time and date at job start Tue Mar 31 2020 18:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21249 * 119.99998 * 2 1 4 4 C 1.47173 * 120.00154 * 180.02562 * 2 1 3 5 5 C 1.39846 * 120.17133 * 179.97438 * 4 2 1 6 6 C 1.37892 * 119.82233 * 179.97438 * 5 4 2 7 7 C 1.38406 * 120.17295 * 0.02562 * 6 5 4 8 8 S 1.76197 * 119.82617 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40089 * 336.46199 * 8 7 6 10 10 O 1.42099 * 106.40105 * 203.54296 * 8 7 6 11 11 N 1.65597 * 107.22063 * 90.00075 * 8 7 6 12 12 C 1.40575 * 120.00102 * 64.99772 * 11 8 7 13 13 C 1.40655 * 126.07116 * 314.41988 * 12 11 8 14 14 N 1.30933 * 108.39973 * 179.87501 * 13 12 11 15 15 N 1.40078 * 108.39873 * 0.38081 * 14 13 12 16 16 C 1.37313 * 126.07682 * 179.71913 * 15 14 13 17 17 H 1.07995 * 119.99965 * 180.02562 * 16 15 14 18 18 C 1.38979 * 120.00273 * 0.04331 * 16 15 14 19 19 N 1.31307 * 119.99558 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00082 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47024 * 90.00015 * 20 18 16 22 22 H 1.48499 * 109.46870 * 209.99845 * 20 18 16 23 23 H 1.48499 * 109.47142 * 329.99967 * 20 18 16 24 24 C 1.35638 * 126.07533 * 134.72480 * 12 11 8 25 25 C 1.38404 * 120.34927 * 0.23391 * 7 6 5 26 26 C 1.37889 * 120.16911 * 359.48487 * 25 7 6 27 27 H 1.09006 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47092 * 300.00017 * 1 2 3 29 29 H 1.08998 * 109.47000 * 60.00207 * 1 2 3 30 30 H 1.07998 * 120.09126 * 359.95974 * 5 4 2 31 31 H 1.07995 * 119.91246 * 180.02562 * 6 5 4 32 32 H 0.97005 * 120.00048 * 244.73214 * 11 8 7 33 33 H 1.07994 * 125.80243 * 0.03364 * 13 12 11 34 34 H 0.97004 * 119.99378 * 180.02562 * 19 18 16 35 35 H 1.07998 * 126.24259 * 359.93132 * 24 12 11 36 36 H 1.07994 * 119.91626 * 179.71941 * 25 7 6 37 37 H 1.08004 * 120.08702 * 180.23041 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2745 -0.0006 5 6 3.6413 -1.2787 -0.0011 6 6 4.3235 -2.4770 -0.0011 7 6 3.6279 -3.6735 -0.0011 8 16 4.5088 -5.1995 -0.0018 9 8 5.7916 -4.9220 -0.5466 10 8 3.6269 -6.1717 -0.5462 11 7 4.7545 -5.6244 1.5798 12 6 3.6577 -5.9308 2.4038 13 6 2.4625 -5.1954 2.4991 14 7 1.6799 -5.7891 3.3649 15 7 2.3451 -6.9175 3.8611 16 6 1.8569 -7.7988 4.7941 17 1 2.4569 -8.6400 5.1082 18 6 0.5904 -7.6085 5.3339 19 7 -0.1394 -6.5862 4.9513 20 14 -0.0740 -8.8078 6.6026 21 1 0.3034 -8.3483 7.9634 22 1 -1.5537 -8.8729 6.4948 23 1 0.5000 -10.1553 6.3582 24 6 3.5661 -6.9849 3.2525 25 6 2.2438 -3.6778 -0.0060 26 6 1.5472 -2.4878 -0.0002 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.1856 -0.3459 -0.0018 31 1 5.4035 -2.4819 -0.0011 32 1 5.6557 -5.6656 1.9365 33 1 2.2288 -4.2956 1.9496 34 1 -1.0232 -6.4531 5.3284 35 1 4.3207 -7.7399 3.4166 36 1 1.7081 -4.6155 -0.0105 37 1 0.4672 -2.4927 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747407638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:19 Heat of formation + Delta-G solvation = -16.456644 kcal Electronic energy + Delta-G solvation = -26032.370665 eV Core-core repulsion = 22096.289999 eV Total energy + Delta-G solvation = -3936.080666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48173 -41.16361 -39.37849 -38.37893 -37.02881 -36.24555 -34.81517 -33.42575 -32.55549 -32.02885 -30.39788 -29.24459 -26.71851 -25.46599 -23.93165 -22.62439 -21.78018 -21.30550 -20.57154 -19.63707 -19.04430 -18.41524 -17.64396 -17.52647 -17.24445 -16.82185 -16.16455 -16.11824 -15.87119 -15.62246 -15.29438 -15.20669 -15.05746 -14.72999 -14.39867 -14.08157 -13.68110 -13.49256 -13.36156 -13.28540 -13.18341 -13.06688 -13.03754 -12.85136 -12.74147 -12.30566 -12.23999 -12.06997 -11.74754 -11.18143 -10.95040 -10.74824 -10.54847 -10.19020 -10.10719 -8.84230 -8.46260 -6.25505 -1.00249 -0.62824 0.14251 1.03091 1.30488 1.43617 1.59373 1.74732 1.88547 2.15067 2.20874 2.42316 2.71091 2.84654 2.88805 3.10129 3.23585 3.60849 3.74798 3.99117 4.10916 4.22679 4.26596 4.36532 4.55455 4.59355 4.61399 4.66711 4.80085 4.85273 4.91170 4.95416 5.02439 5.19981 5.25310 5.43956 5.59314 5.91906 6.08816 6.32179 6.33873 6.75962 7.42520 7.62296 8.52809 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.003900 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.841747 B = 7178.122004 C = 9078.218058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.399 3.601 3 O -0.486 6.486 4 C -0.127 4.127 5 C -0.092 4.092 6 C -0.033 4.033 7 C -0.652 4.652 8 S 2.713 3.287 9 O -0.973 6.973 10 O -0.981 6.981 11 N -1.010 6.010 12 C -0.041 4.041 13 C -0.076 4.076 14 N -0.290 5.290 15 N -0.167 5.167 16 C -0.355 4.355 17 H 0.136 0.864 18 C 0.001 3.999 19 N -0.818 5.818 20 Si 1.013 2.987 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.250 1.250 24 C -0.065 4.065 25 C -0.045 4.045 26 C -0.088 4.088 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.427 0.573 33 H 0.180 0.820 34 H 0.278 0.722 35 H 0.179 0.821 36 H 0.144 0.856 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 7.576 -6.667 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.279 3.721 3 O -0.364 6.364 4 C -0.128 4.128 5 C -0.111 4.111 6 C -0.052 4.052 7 C -0.740 4.740 8 S 2.805 3.195 9 O -0.963 6.963 10 O -0.971 6.971 11 N -0.765 5.765 12 C -0.149 4.149 13 C -0.253 4.253 14 N -0.121 5.121 15 N 0.065 4.935 16 C -0.487 4.487 17 H 0.154 0.846 18 C -0.211 4.211 19 N -0.446 5.446 20 Si 0.833 3.167 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.173 1.173 24 C -0.216 4.216 25 C -0.064 4.064 26 C -0.106 4.106 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.265 0.735 33 H 0.196 0.804 34 H 0.088 0.912 35 H 0.196 0.804 36 H 0.161 0.839 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.528 7.789 -6.870 10.497 hybrid contribution 0.639 0.045 0.546 0.842 sum 2.167 7.834 -6.324 10.299 Atomic orbital electron populations 1.22336 0.90113 1.06896 1.06389 1.23054 0.93541 0.86283 0.69237 1.90532 1.73111 1.35035 1.37700 1.21149 0.95056 0.95767 1.00849 1.21735 0.93736 0.99116 0.96523 1.21131 1.01481 0.90235 0.92351 1.31041 1.06871 1.20230 1.15873 1.01171 0.72707 0.73827 0.71833 1.93553 1.40094 1.86124 1.76542 1.93555 1.67878 1.58682 1.76972 1.51984 1.12818 1.83680 1.28061 1.16717 0.91536 0.99879 1.06735 1.24368 0.94708 1.02553 1.03650 1.78103 1.20164 0.99061 1.14790 1.44838 1.08507 1.16029 1.24133 1.20572 1.02634 1.07187 1.18274 0.84626 1.26707 0.95790 0.98767 0.99850 1.70330 1.10026 1.26595 1.37603 0.84663 0.77488 0.77847 0.76714 1.18987 1.20015 1.17336 1.22318 0.92068 1.03029 1.04223 1.21140 0.92275 1.00517 0.92464 1.21963 1.02323 0.90132 0.96182 0.87779 0.87417 0.86775 0.82919 0.81883 0.73520 0.80367 0.91211 0.80367 0.83853 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 10.19 71.24 0.73 -1.81 16 2 C 0.40 8.26 7.23 28.03 0.20 8.46 16 3 O -0.49 -13.04 17.09 -2.93 -0.05 -13.09 16 4 C -0.13 -2.87 5.87 -20.15 -0.12 -2.99 16 5 C -0.09 -2.15 9.60 22.58 0.22 -1.93 16 6 C -0.03 -0.80 9.50 22.23 0.21 -0.59 16 7 C -0.65 -18.54 5.22 22.35 0.12 -18.43 16 8 S 2.71 86.34 5.61 -56.49 -0.32 86.02 16 9 O -0.97 -31.31 17.26 -128.00 -2.21 -33.52 16 10 O -0.98 -38.36 16.98 -128.00 -2.17 -40.53 16 11 N -1.01 -32.46 5.93 -51.65 -0.31 -32.76 16 12 C -0.04 -1.67 6.41 37.73 0.24 -1.43 16 13 C -0.08 -3.41 10.72 85.42 0.92 -2.50 16 14 N -0.29 -15.49 10.40 -56.45 -0.59 -16.08 16 15 N -0.17 -8.65 3.74 -189.99 -0.71 -9.36 16 16 C -0.36 -17.92 10.25 84.01 0.86 -17.06 16 17 H 0.14 6.04 7.83 -2.91 -0.02 6.02 16 18 C 0.00 0.07 5.50 84.95 0.47 0.53 16 19 N -0.82 -43.55 11.81 21.66 0.26 -43.30 16 20 Si 1.01 36.66 29.55 68.60 2.03 38.69 16 21 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 22 H -0.28 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 24 C -0.06 -2.87 11.50 83.35 0.96 -1.91 16 25 C -0.04 -1.25 6.33 22.23 0.14 -1.11 16 26 C -0.09 -1.95 9.45 22.58 0.21 -1.74 16 27 H 0.10 0.99 5.61 -2.38 -0.01 0.98 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.15 3.14 7.65 -2.91 -0.02 3.12 16 31 H 0.16 3.30 7.60 -2.91 -0.02 3.27 16 32 H 0.43 10.94 8.96 -96.74 -0.87 10.08 16 33 H 0.18 6.90 4.26 -2.91 -0.01 6.89 16 34 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 35 H 0.18 6.58 8.06 -2.91 -0.02 6.56 16 36 H 0.14 4.32 7.19 -2.91 -0.02 4.30 16 37 H 0.18 2.71 5.93 -2.91 -0.02 2.69 16 Total: -1.00 -74.20 335.13 1.37 -72.83 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.29 Total: 33.61 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 5.15 Total: -42.51 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -1.35 Total: -101.50 kcal Atomic # 8 Polarization: -82.71 SS G_CDS: -4.43 Total: -87.14 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Atomic # 16 Polarization: 86.34 SS G_CDS: -0.32 Total: 86.02 kcal Total: -74.20 1.37 -72.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747407638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.376 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds