Wall clock time and date at job start Tue Mar 31 2020 19:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38161 * 119.98144 * 2 1 4 4 C 1.38710 * 119.95609 * 180.28093 * 3 2 1 5 5 O 1.35924 * 120.04066 * 179.74832 * 4 3 2 6 6 C 1.42899 * 116.99933 * 179.71959 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21303 * 119.99816 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40649 * 126.08553 * 359.68015 * 10 9 7 12 12 N 1.30903 * 108.38945 * 179.87998 * 11 10 9 13 13 N 1.40074 * 108.40705 * 0.38914 * 12 11 10 14 14 C 1.37320 * 126.07077 * 179.73305 * 13 12 11 15 15 H 1.07999 * 120.00028 * 180.02562 * 14 13 12 16 16 C 1.38983 * 120.00055 * 0.02562 * 14 13 12 17 17 N 1.31296 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47091 * 60.00391 * 18 16 14 20 20 H 1.48503 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47397 * 300.00434 * 18 16 14 22 22 C 1.35679 * 126.07814 * 179.97438 * 10 9 7 23 23 C 1.38736 * 119.91164 * 359.46248 * 4 3 2 24 24 C 1.38121 * 119.96250 * 0.26359 * 23 4 3 25 25 C 1.38349 * 119.97742 * 179.72398 * 2 1 3 26 26 Cl 1.73602 * 119.95602 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.46874 * 270.27834 * 1 2 3 28 28 H 1.09003 * 109.47341 * 30.27271 * 1 2 3 29 29 H 1.08998 * 109.47778 * 150.27825 * 1 2 3 30 30 H 1.07995 * 120.02549 * 0.02562 * 3 2 1 31 31 H 1.09009 * 109.46798 * 59.99550 * 6 5 4 32 32 H 1.08998 * 109.46844 * 300.00054 * 6 5 4 33 33 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 34 34 H 1.07999 * 125.80209 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00252 * 179.97438 * 17 16 14 36 36 H 1.07996 * 126.24944 * 359.92772 * 22 10 9 37 37 H 1.08006 * 120.02048 * 180.27781 * 23 4 3 38 38 H 1.08003 * 119.97733 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1961 -0.0059 5 8 4.2654 2.3725 -0.0111 6 6 5.6923 2.2961 -0.0108 7 6 6.2699 3.6880 -0.0175 8 8 5.5321 4.6508 -0.0226 9 7 7.6063 3.8629 -0.0241 10 6 8.1451 5.1615 -0.0361 11 6 7.4127 6.3622 -0.0488 12 7 8.2582 7.3615 -0.0550 13 7 9.5585 6.8408 -0.0555 14 6 10.7217 7.5706 -0.0663 15 1 11.6762 7.0653 -0.0661 16 6 10.6706 8.9594 -0.0776 17 7 9.5102 9.5737 -0.0774 18 14 12.2529 9.9522 -0.0916 19 1 13.0398 9.6123 -1.3043 20 1 11.9281 11.4012 -0.1017 21 1 13.0488 9.6323 1.1205 22 6 9.4642 5.4792 -0.0432 23 6 4.2758 -0.0067 -0.0005 24 6 3.5820 -1.2011 0.0052 25 6 2.1982 -1.1984 0.0058 26 17 1.3284 -2.7008 0.0123 27 1 -0.3633 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6575 2.1321 0.0004 31 1 6.0276 1.7595 -0.8984 32 1 6.0276 1.7674 0.8816 33 1 8.1963 3.0930 -0.0203 34 1 6.3360 6.4454 -0.0506 35 1 9.4745 10.5430 -0.0849 36 1 10.2889 4.7820 -0.0395 37 1 5.3558 -0.0092 -0.0005 38 1 4.1200 -2.1376 0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747436550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:05 Heat of formation + Delta-G solvation = 32.189029 kcal Electronic energy + Delta-G solvation = -24364.537846 eV Core-core repulsion = 20428.522908 eV Total energy + Delta-G solvation = -3936.014937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66911 -39.88917 -38.80154 -37.77841 -36.44860 -34.29551 -33.22469 -32.99664 -30.86045 -30.26259 -28.85558 -27.46411 -26.99350 -24.77731 -23.03506 -22.02279 -21.06691 -20.32590 -19.50284 -18.30941 -17.46810 -17.08817 -16.74052 -16.46883 -15.93732 -15.45769 -15.20360 -14.69291 -14.62482 -14.26934 -14.06171 -13.75163 -13.63431 -13.19910 -13.04885 -12.89151 -12.71160 -12.51754 -12.34535 -12.03737 -11.70698 -11.57401 -11.45683 -11.26662 -11.01117 -10.95902 -10.89903 -10.58128 -10.24079 -9.27891 -9.23591 -9.20762 -8.84899 -8.40872 -8.10259 -6.77202 -6.58485 -4.26584 0.85061 0.92314 1.87760 2.54015 2.69291 2.99406 3.03269 3.07342 3.25419 3.62055 3.69932 3.87608 4.34988 4.35082 4.37705 4.58712 4.66391 4.80672 4.90427 4.92952 4.99654 5.01548 5.08697 5.23909 5.28781 5.53838 5.59543 5.77385 5.92150 5.99369 6.18732 6.22712 6.38732 6.81118 6.90311 6.98518 7.10382 7.19228 7.81806 8.06992 8.21750 8.56079 8.74798 9.33647 9.62661 10.37351 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.051103 B = 0.001698 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.786792 B =16481.956701 C =17009.244925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.035 4.035 3 C -0.141 4.141 4 C 0.146 3.854 5 O -0.281 6.281 6 C 0.045 3.955 7 C 0.498 3.502 8 O -0.512 6.512 9 N -0.619 5.619 10 C -0.062 4.062 11 C -0.031 4.031 12 N -0.260 5.260 13 N -0.141 5.141 14 C -0.324 4.324 15 H 0.116 0.884 16 C 0.046 3.954 17 N -0.769 5.769 18 Si 0.935 3.065 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.267 1.267 22 C -0.082 4.082 23 C -0.207 4.207 24 C -0.064 4.064 25 C -0.080 4.080 26 Cl -0.074 7.074 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.398 0.602 34 H 0.176 0.824 35 H 0.276 0.724 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.287 -21.860 0.176 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.036 4.036 3 C -0.159 4.159 4 C 0.099 3.901 5 O -0.192 6.192 6 C -0.034 4.034 7 C 0.282 3.718 8 O -0.387 6.387 9 N -0.263 5.263 10 C -0.168 4.168 11 C -0.207 4.207 12 N -0.091 5.091 13 N 0.092 4.908 14 C -0.456 4.456 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.395 5.395 18 Si 0.759 3.241 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.191 1.191 22 C -0.233 4.233 23 C -0.226 4.226 24 C -0.083 4.083 25 C -0.106 4.106 26 Cl -0.045 7.045 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.161 0.839 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.231 0.769 34 H 0.193 0.807 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.963 -19.567 0.162 22.430 hybrid contribution 1.224 -1.331 0.014 1.808 sum -9.739 -20.897 0.176 23.056 Atomic orbital electron populations 1.20905 0.89793 1.03762 1.03247 1.19533 0.96744 0.90455 0.96870 1.20279 0.90886 0.98428 1.06340 1.19128 0.91935 0.84766 0.94236 1.86214 1.18427 1.26927 1.87680 1.22502 0.80011 0.97300 1.03586 1.19661 0.82568 0.89761 0.79784 1.90659 1.58721 1.41104 1.48211 1.42248 1.05262 1.07111 1.71656 1.17208 0.91594 0.83560 1.24394 1.24126 1.00186 0.88620 1.07764 1.78276 0.85684 1.19418 1.25738 1.44561 1.05444 1.01943 1.38889 1.19835 0.83010 0.89191 1.53553 0.86603 1.25651 0.98848 0.97179 0.95460 1.70206 1.24234 1.10098 1.34979 0.85886 0.80185 0.78551 0.79477 1.19140 1.20103 1.19147 1.21234 0.95264 0.86863 1.19980 1.21227 1.00705 0.91415 1.09295 1.20792 0.91806 0.98518 0.97158 1.20631 0.92261 0.86635 1.11122 1.98344 1.76814 1.32140 1.97199 0.90287 0.90671 0.90590 0.83933 0.89042 0.89050 0.76895 0.80710 0.91334 0.83614 0.84382 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.61 36.00 0.35 -0.50 16 2 C -0.04 -0.33 5.88 -104.61 -0.62 -0.94 16 3 C -0.14 -1.47 9.64 -39.44 -0.38 -1.85 16 4 C 0.15 1.64 6.69 -39.22 -0.26 1.38 16 5 O -0.28 -3.83 9.67 -39.41 -0.38 -4.21 16 6 C 0.04 0.51 5.22 36.01 0.19 0.69 16 7 C 0.50 8.35 7.88 -10.98 -0.09 8.26 16 8 O -0.51 -11.12 13.65 -14.37 -0.20 -11.32 16 9 N -0.62 -10.25 5.47 -10.00 -0.05 -10.31 16 10 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 11 C -0.03 -0.82 10.85 -17.04 -0.18 -1.01 16 12 N -0.26 -7.53 10.40 30.80 0.32 -7.21 16 13 N -0.14 -3.82 3.74 -11.41 -0.04 -3.86 16 14 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 15 H 0.12 2.67 7.83 -52.49 -0.41 2.26 16 16 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 17 N -0.77 -21.37 11.81 55.49 0.66 -20.71 16 18 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.08 -1.88 11.49 -16.39 -0.19 -2.07 16 23 C -0.21 -1.85 9.04 -39.44 -0.36 -2.21 16 24 C -0.06 -0.54 9.82 -39.57 -0.39 -0.93 16 25 C -0.08 -0.73 6.31 -39.49 -0.25 -0.98 16 26 Cl -0.07 -0.61 27.28 -51.86 -1.41 -2.03 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.08 0.51 6.90 -51.93 -0.36 0.15 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.09 0.76 7.66 -51.92 -0.40 0.36 16 32 H 0.09 0.76 7.66 -51.93 -0.40 0.36 16 33 H 0.40 4.68 8.83 -40.82 -0.36 4.32 16 34 H 0.18 4.58 5.92 -52.49 -0.31 4.27 16 35 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 37 H 0.14 0.90 6.30 -52.48 -0.33 0.57 16 38 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 LS Contribution 347.78 15.07 5.24 5.24 Total: -1.00 -34.47 347.78 -7.71 -42.19 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.81 Total: 8.22 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.00 Total: -9.66 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.88 Total: -42.10 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.58 Total: -15.53 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.41 Total: -2.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.47 -7.71 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747436550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.376 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds