Wall clock time and date at job start Tue Mar 31 2020 19:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38161 * 119.98144 * 2 1 4 4 C 1.38710 * 119.95609 * 180.28093 * 3 2 1 5 5 O 1.35924 * 120.04066 * 179.74832 * 4 3 2 6 6 C 1.42899 * 116.99933 * 179.71959 * 5 4 3 7 7 C 1.50700 * 109.47143 * 179.97438 * 6 5 4 8 8 O 1.21303 * 119.99816 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99675 * 180.27800 * 7 6 5 10 10 C 1.40595 * 119.99527 * 179.72943 * 9 7 6 11 11 C 1.40649 * 126.08553 * 359.68015 * 10 9 7 12 12 N 1.30903 * 108.38945 * 179.87998 * 11 10 9 13 13 N 1.40074 * 108.40705 * 0.38914 * 12 11 10 14 14 C 1.37320 * 126.07077 * 179.73305 * 13 12 11 15 15 H 1.07999 * 120.00028 * 180.02562 * 14 13 12 16 16 C 1.38983 * 120.00055 * 0.02562 * 14 13 12 17 17 N 1.31296 * 119.99923 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47091 * 60.00391 * 18 16 14 20 20 H 1.48503 * 109.47066 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47397 * 300.00434 * 18 16 14 22 22 C 1.35679 * 126.07814 * 179.97438 * 10 9 7 23 23 C 1.38736 * 119.91164 * 359.46248 * 4 3 2 24 24 C 1.38121 * 119.96250 * 0.26359 * 23 4 3 25 25 C 1.38349 * 119.97742 * 179.72398 * 2 1 3 26 26 Cl 1.73602 * 119.95602 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.46874 * 270.27834 * 1 2 3 28 28 H 1.09003 * 109.47341 * 30.27271 * 1 2 3 29 29 H 1.08998 * 109.47778 * 150.27825 * 1 2 3 30 30 H 1.07995 * 120.02549 * 0.02562 * 3 2 1 31 31 H 1.09009 * 109.46798 * 59.99550 * 6 5 4 32 32 H 1.08998 * 109.46844 * 300.00054 * 6 5 4 33 33 H 0.97001 * 120.00485 * 359.71840 * 9 7 6 34 34 H 1.07999 * 125.80209 * 0.02562 * 11 10 9 35 35 H 0.97004 * 120.00252 * 179.97438 * 17 16 14 36 36 H 1.07996 * 126.24944 * 359.92772 * 22 10 9 37 37 H 1.08006 * 120.02048 * 180.27781 * 23 4 3 38 38 H 1.08003 * 119.97733 * 179.97438 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1967 0.0000 4 6 3.5844 1.1961 -0.0059 5 8 4.2654 2.3725 -0.0111 6 6 5.6923 2.2961 -0.0108 7 6 6.2699 3.6880 -0.0175 8 8 5.5321 4.6508 -0.0226 9 7 7.6063 3.8629 -0.0241 10 6 8.1451 5.1615 -0.0361 11 6 7.4127 6.3622 -0.0488 12 7 8.2582 7.3615 -0.0550 13 7 9.5585 6.8408 -0.0555 14 6 10.7217 7.5706 -0.0663 15 1 11.6762 7.0653 -0.0661 16 6 10.6706 8.9594 -0.0776 17 7 9.5102 9.5737 -0.0774 18 14 12.2529 9.9522 -0.0916 19 1 13.0398 9.6123 -1.3043 20 1 11.9281 11.4012 -0.1017 21 1 13.0488 9.6323 1.1205 22 6 9.4642 5.4792 -0.0432 23 6 4.2758 -0.0067 -0.0005 24 6 3.5820 -1.2011 0.0052 25 6 2.1982 -1.1984 0.0058 26 17 1.3284 -2.7008 0.0123 27 1 -0.3633 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8924 -0.5095 30 1 1.6575 2.1321 0.0004 31 1 6.0276 1.7595 -0.8984 32 1 6.0276 1.7674 0.8816 33 1 8.1963 3.0930 -0.0203 34 1 6.3360 6.4454 -0.0506 35 1 9.4745 10.5430 -0.0849 36 1 10.2889 4.7820 -0.0395 37 1 5.3558 -0.0092 -0.0005 38 1 4.1200 -2.1376 0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747436550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:05 Heat of formation + Delta-G solvation = 10.108619 kcal Electronic energy + Delta-G solvation = -24365.495324 eV Core-core repulsion = 20428.522908 eV Total energy + Delta-G solvation = -3936.972416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81380 -41.31514 -40.15353 -38.73988 -37.14065 -35.94656 -34.99995 -33.63534 -32.32499 -31.59545 -30.18188 -28.67132 -27.88038 -26.60217 -23.73802 -23.16666 -22.68743 -21.64138 -21.22772 -19.49456 -18.84572 -18.25189 -17.50022 -17.40896 -17.40660 -16.89004 -16.72856 -15.81894 -15.77592 -15.36077 -15.14812 -15.07386 -14.77595 -14.74625 -14.36864 -13.89617 -13.47739 -13.33580 -13.30928 -13.21482 -12.97331 -12.90892 -12.86124 -12.77371 -12.23144 -12.13804 -11.86597 -11.63423 -11.61842 -11.01226 -10.84289 -10.70362 -10.10700 -9.90757 -9.14722 -8.54888 -8.46408 -6.24427 0.16290 0.21692 1.20047 1.20239 1.39667 1.49322 1.53052 1.57994 1.85659 2.14388 2.48939 2.55678 2.63048 2.93340 3.09795 3.62048 3.75820 3.82004 3.98521 4.10793 4.15198 4.30191 4.33691 4.44738 4.60343 4.63788 4.75516 4.87510 4.96796 5.00286 5.06945 5.16340 5.23473 5.29325 5.33020 5.42763 5.56079 5.95855 6.24144 6.32955 6.71054 6.73977 7.34819 7.47163 7.67955 8.52780 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.051103 B = 0.001698 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.786792 B =16481.956701 C =17009.244925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.041 4.041 3 C -0.159 4.159 4 C 0.126 3.874 5 O -0.316 6.316 6 C 0.055 3.945 7 C 0.495 3.505 8 O -0.569 6.569 9 N -0.606 5.606 10 C -0.046 4.046 11 C -0.062 4.062 12 N -0.312 5.312 13 N -0.168 5.168 14 C -0.354 4.354 15 H 0.143 0.857 16 C -0.008 4.008 17 N -0.826 5.826 18 Si 1.020 2.980 19 H -0.252 1.252 20 H -0.280 1.280 21 H -0.253 1.253 22 C -0.075 4.075 23 C -0.201 4.201 24 C -0.064 4.064 25 C -0.089 4.089 26 Cl -0.067 7.067 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.426 0.574 34 H 0.163 0.837 35 H 0.276 0.724 36 H 0.193 0.807 37 H 0.168 0.832 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.281 -25.160 0.203 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.042 4.042 3 C -0.178 4.178 4 C 0.080 3.920 5 O -0.229 6.229 6 C -0.023 4.023 7 C 0.281 3.719 8 O -0.447 6.447 9 N -0.254 5.254 10 C -0.152 4.152 11 C -0.237 4.237 12 N -0.144 5.144 13 N 0.063 4.937 14 C -0.485 4.485 15 H 0.161 0.839 16 C -0.220 4.220 17 N -0.454 5.454 18 Si 0.838 3.162 19 H -0.176 1.176 20 H -0.205 1.205 21 H -0.177 1.177 22 C -0.226 4.226 23 C -0.220 4.220 24 C -0.082 4.082 25 C -0.115 4.115 26 Cl -0.039 7.039 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.264 0.736 34 H 0.180 0.820 35 H 0.086 0.914 36 H 0.210 0.790 37 H 0.186 0.814 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.947 -22.959 0.190 24.641 hybrid contribution 0.450 -0.509 0.009 0.679 sum -8.497 -23.467 0.199 24.959 Atomic orbital electron populations 1.20951 0.88633 1.04245 1.03862 1.19725 0.97729 0.90199 0.96515 1.20398 0.91286 0.98767 1.07326 1.19307 0.92069 0.84845 0.95740 1.86152 1.19552 1.28727 1.88502 1.22565 0.79221 0.93226 1.07300 1.20778 0.82019 0.91676 0.77379 1.90648 1.60067 1.43720 1.50285 1.42143 1.06022 1.05756 1.71436 1.17278 0.91160 0.85121 1.21622 1.24151 0.99790 0.90368 1.09376 1.78168 0.87299 1.21455 1.27520 1.44859 1.05003 1.03519 1.40350 1.20605 0.83755 0.90121 1.54020 0.83920 1.26904 1.02637 0.98263 0.94148 1.70401 1.27322 1.10318 1.37368 0.84647 0.75173 0.76037 0.80318 1.17638 1.20495 1.17654 1.22032 0.96707 0.86182 1.17632 1.21505 1.02122 0.90350 1.07985 1.21116 0.91591 0.99440 0.96088 1.20844 0.92943 0.86818 1.10924 1.98347 1.76789 1.31568 1.97152 0.89548 0.90138 0.90154 0.84642 0.85081 0.85074 0.73603 0.81962 0.91438 0.78985 0.81426 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.61 71.23 0.68 -0.91 16 2 C -0.04 -0.72 5.88 -19.86 -0.12 -0.83 16 3 C -0.16 -3.30 9.64 22.36 0.22 -3.08 16 4 C 0.13 2.64 6.69 22.50 0.15 2.79 16 5 O -0.32 -8.26 9.67 -73.65 -0.71 -8.97 16 6 C 0.05 1.05 5.22 71.24 0.37 1.43 16 7 C 0.49 15.94 7.88 87.66 0.69 16.63 16 8 O -0.57 -25.42 13.65 15.93 0.22 -25.20 16 9 N -0.61 -18.75 5.47 -303.92 -1.66 -20.41 16 10 C -0.05 -2.03 6.90 37.73 0.26 -1.77 16 11 C -0.06 -3.37 10.85 85.42 0.93 -2.44 16 12 N -0.31 -18.91 10.40 -56.47 -0.59 -19.50 16 13 N -0.17 -9.23 3.74 -190.02 -0.71 -9.94 16 14 C -0.35 -18.48 10.25 84.01 0.86 -17.62 16 15 H 0.14 6.35 7.83 -2.91 -0.02 6.33 16 16 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 17 N -0.83 -47.89 11.81 21.66 0.26 -47.63 16 18 Si 1.02 38.22 29.55 68.60 2.03 40.24 16 19 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 20 H -0.28 -10.49 7.11 99.48 0.71 -9.79 16 21 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 22 C -0.08 -3.34 11.49 83.37 0.96 -2.38 16 23 C -0.20 -2.92 9.04 22.36 0.20 -2.72 16 24 C -0.06 -0.88 9.82 22.28 0.22 -0.66 16 25 C -0.09 -1.45 6.31 22.33 0.14 -1.31 16 26 Cl -0.07 -0.99 27.28 -2.72 -0.07 -1.06 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 29 H 0.08 0.98 6.90 -2.39 -0.02 0.96 16 30 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.13 1.53 7.66 -2.38 -0.02 1.51 16 32 H 0.13 1.53 7.66 -2.39 -0.02 1.51 16 33 H 0.43 8.26 8.83 -92.71 -0.82 7.44 16 34 H 0.16 9.13 5.92 -2.91 -0.02 9.11 16 35 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.19 6.45 8.06 -2.91 -0.02 6.43 16 37 H 0.17 1.31 6.30 -2.91 -0.02 1.29 16 38 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -81.67 347.78 5.10 -76.57 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.31 Total: 28.72 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 6.03 Total: -12.82 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -2.70 Total: -97.48 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.49 Total: -34.17 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.07 Total: -1.06 kcal Total: -81.67 5.10 -76.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747436550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.680 kcal (2) G-P(sol) polarization free energy of solvation -81.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds