Wall clock time and date at job start Tue Mar 31 2020 19:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38278 * 119.96141 * 2 1 4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2 6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3 7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3 8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7 11 11 O 1.21311 * 119.99663 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00535 * 180.02562 * 10 9 8 13 13 C 1.40592 * 120.00506 * 179.97438 * 12 10 9 14 14 C 1.40653 * 126.07804 * 359.69496 * 13 12 10 15 15 N 1.30914 * 108.38567 * 179.81338 * 14 13 12 16 16 N 1.40068 * 108.40391 * 0.44226 * 15 14 13 17 17 C 1.37318 * 126.06628 * 179.69804 * 16 15 14 18 18 H 1.07998 * 120.00107 * 180.02562 * 17 16 15 19 19 C 1.38993 * 120.00162 * 0.02562 * 17 16 15 20 20 N 1.31297 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00021 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46853 * 60.00363 * 21 19 17 23 23 H 1.48498 * 109.47144 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47128 * 300.00709 * 21 19 17 25 25 C 1.35679 * 126.08545 * 179.97438 * 13 12 10 26 26 C 1.38151 * 119.96265 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46711 * 269.97874 * 1 2 3 28 28 H 1.08996 * 109.46942 * 29.98001 * 1 2 3 29 29 H 1.09002 * 109.46795 * 149.97700 * 1 2 3 30 30 H 1.08000 * 119.94149 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.97834 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47232 * 300.00400 * 9 8 7 33 33 H 1.09008 * 109.46822 * 60.00182 * 9 8 7 34 34 H 0.97006 * 119.99936 * 0.02562 * 12 10 9 35 35 H 1.08001 * 125.81034 * 359.96683 * 14 13 12 36 36 H 0.97000 * 119.99734 * 179.97438 * 20 19 17 37 37 H 1.07999 * 126.24679 * 359.97438 * 25 13 12 38 38 H 1.07995 * 120.02562 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5801 1.2018 0.0005 5 6 4.2755 0.0069 0.0001 6 17 6.0115 0.0118 0.0075 7 6 3.5840 -1.1968 -0.0003 8 8 4.2650 -2.3732 -0.0002 9 6 3.4881 -3.5725 -0.0012 10 6 4.4074 -4.7666 -0.0003 11 8 5.6098 -4.6063 0.0016 12 7 3.8937 -6.0125 -0.0015 13 6 4.7513 -7.1266 -0.0012 14 6 6.1573 -7.0895 -0.0057 15 7 6.6029 -8.3205 0.0002 16 7 5.5037 -9.1886 -0.0015 17 6 5.5573 -10.5608 -0.0026 18 1 4.6438 -11.1369 -0.0043 19 6 6.7872 -11.2083 -0.0014 20 7 7.8978 -10.5079 0.0012 21 14 6.8601 -13.0749 -0.0021 22 1 6.1814 -13.5962 -1.2157 23 1 8.2784 -13.5149 0.0000 24 1 6.1784 -13.5973 1.2092 25 6 4.3700 -8.4287 -0.0019 26 6 2.1969 -1.1969 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6560 2.1324 -0.0004 31 1 4.1171 2.1388 0.0010 32 1 2.8586 -3.5983 0.8882 33 1 2.8600 -3.5977 -0.8918 34 1 2.9322 -6.1407 -0.0034 35 1 6.7659 -6.1973 -0.0106 36 1 8.7561 -10.9598 0.0024 37 1 3.3546 -8.7967 -0.0023 38 1 1.6568 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747438009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:42 Heat of formation + Delta-G solvation = 33.720338 kcal Electronic energy + Delta-G solvation = -24668.823016 eV Core-core repulsion = 20732.874481 eV Total energy + Delta-G solvation = -3935.948535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65360 -39.85779 -38.72626 -37.55330 -36.51486 -34.26034 -33.20200 -32.79644 -30.68717 -30.26556 -29.14018 -27.50493 -26.80142 -24.78412 -22.95310 -21.89690 -21.13589 -20.38638 -19.46103 -18.28346 -17.48675 -17.03581 -16.53623 -16.47075 -15.93736 -15.44357 -15.15337 -14.56899 -14.54293 -14.24205 -13.96362 -13.89612 -13.66960 -13.26216 -13.01536 -12.85986 -12.83555 -12.65127 -11.95466 -11.68959 -11.55259 -11.53279 -11.41834 -11.25091 -11.09934 -10.97099 -10.87196 -10.56821 -10.20828 -9.23500 -9.18538 -9.09837 -8.82296 -8.38748 -8.07728 -6.74509 -6.56501 -4.24433 0.80869 1.01856 2.08971 2.55583 2.73054 3.01039 3.04395 3.08560 3.26769 3.64335 3.71275 3.89139 4.33852 4.37771 4.40251 4.61398 4.67409 4.82075 4.85440 4.95342 5.01607 5.07187 5.14412 5.15911 5.20649 5.33718 5.59702 5.75515 5.83302 6.14257 6.21199 6.31777 6.41535 6.83458 6.92704 6.97559 7.11039 7.21583 7.84017 8.10196 8.24360 8.59138 8.77973 9.35999 9.65164 10.39339 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.002095 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.170347 B =13361.672521 C =14410.393014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.043 4.043 3 C -0.152 4.152 4 C -0.069 4.069 5 C -0.075 4.075 6 Cl -0.051 7.051 7 C 0.148 3.852 8 O -0.272 6.272 9 C 0.045 3.955 10 C 0.498 3.502 11 O -0.508 6.508 12 N -0.619 5.619 13 C -0.061 4.061 14 C -0.032 4.032 15 N -0.260 5.260 16 N -0.141 5.141 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.769 5.769 21 Si 0.935 3.065 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.083 4.083 26 C -0.204 4.204 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.397 0.603 35 H 0.176 0.824 36 H 0.276 0.724 37 H 0.146 0.854 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.955 19.353 0.007 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.043 4.043 3 C -0.170 4.170 4 C -0.087 4.087 5 C -0.103 4.103 6 Cl -0.022 7.022 7 C 0.100 3.900 8 O -0.184 6.184 9 C -0.034 4.034 10 C 0.282 3.718 11 O -0.383 6.383 12 N -0.264 5.264 13 C -0.166 4.166 14 C -0.207 4.207 15 N -0.091 5.091 16 N 0.091 4.909 17 C -0.456 4.456 18 H 0.134 0.866 19 C -0.172 4.172 20 N -0.395 5.395 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.234 4.234 26 C -0.223 4.223 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.193 0.807 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.392 18.655 0.014 22.964 hybrid contribution -1.401 -0.436 0.002 1.467 sum -14.793 18.219 0.016 23.468 Atomic orbital electron populations 1.20842 0.90515 1.03219 1.02781 1.19793 0.96378 0.92326 0.95800 1.20885 0.93196 0.97946 1.04994 1.20905 0.94141 0.96096 0.97595 1.20222 0.86023 0.92205 1.11801 1.98397 1.07945 1.98841 1.96981 1.18753 0.90314 0.85493 0.95403 1.86287 1.33590 1.10940 1.87541 1.22506 0.93966 0.83454 1.03499 1.19637 0.89079 0.83224 0.79850 1.90673 1.14803 1.84881 1.47911 1.42241 1.08755 1.03554 1.71827 1.17200 0.90330 0.84792 1.24279 1.24142 0.91918 0.96919 1.07755 1.78280 1.07912 0.97176 1.25721 1.44555 1.02180 1.05199 1.38943 1.19826 0.95247 0.76929 1.53575 0.86629 1.25655 0.94717 1.01298 0.95489 1.70208 0.97930 1.36366 1.35009 0.85888 0.78227 0.80531 0.79461 1.19148 1.20122 1.19156 1.21229 0.92455 0.89670 1.20055 1.21122 0.91895 0.99559 1.09687 0.90625 0.91097 0.91174 0.85077 0.84325 0.89103 0.89096 0.76958 0.80691 0.91350 0.83634 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.01 36.00 0.36 -0.22 16 2 C -0.04 -0.33 5.88 -104.64 -0.62 -0.95 16 3 C -0.15 -1.16 9.70 -39.56 -0.38 -1.54 16 4 C -0.07 -0.62 9.83 -39.57 -0.39 -1.01 16 5 C -0.08 -0.90 6.33 -39.36 -0.25 -1.15 16 6 Cl -0.05 -0.68 28.50 -51.86 -1.48 -2.15 16 7 C 0.15 1.81 6.68 -39.19 -0.26 1.55 16 8 O -0.27 -4.00 9.13 -39.43 -0.36 -4.36 16 9 C 0.04 0.53 5.22 36.00 0.19 0.72 16 10 C 0.50 8.62 7.88 -10.99 -0.09 8.54 16 11 O -0.51 -11.38 13.65 -14.38 -0.20 -11.58 16 12 N -0.62 -10.50 5.47 -10.00 -0.05 -10.56 16 13 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 14 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 15 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 16 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 17 C -0.32 -8.52 10.25 -14.81 -0.15 -8.67 16 18 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 19 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 20 N -0.77 -21.58 11.81 55.50 0.66 -20.92 16 21 Si 0.94 18.87 29.55 -169.99 -5.02 13.84 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 26 C -0.20 -1.88 8.69 -39.44 -0.34 -2.22 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 33 H 0.09 0.80 7.66 -51.92 -0.40 0.40 16 34 H 0.40 4.80 8.83 -40.82 -0.36 4.44 16 35 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 36 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 38 H 0.14 0.95 6.30 -52.49 -0.33 0.62 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -35.58 349.76 -7.76 -43.35 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -3.87 Total: 7.30 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.98 Total: -8.98 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.88 Total: -42.69 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.56 Total: -15.94 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.58 -7.76 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.067 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds