Wall clock time and date at job start Tue Mar 31 2020 19:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38278 * 119.96141 * 2 1 4 4 C 1.38251 * 120.11906 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.04239 * 0.04611 * 4 3 2 6 6 Cl 1.73603 * 120.03781 * 180.25769 * 5 4 3 7 7 C 1.38815 * 119.92459 * 359.97361 * 5 4 3 8 8 O 1.35930 * 120.05985 * 180.02562 * 7 5 4 9 9 C 1.42893 * 116.99957 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47463 * 180.02562 * 9 8 7 11 11 O 1.21311 * 119.99663 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00535 * 180.02562 * 10 9 8 13 13 C 1.40592 * 120.00506 * 179.97438 * 12 10 9 14 14 C 1.40653 * 126.07804 * 359.69496 * 13 12 10 15 15 N 1.30914 * 108.38567 * 179.81338 * 14 13 12 16 16 N 1.40068 * 108.40391 * 0.44226 * 15 14 13 17 17 C 1.37318 * 126.06628 * 179.69804 * 16 15 14 18 18 H 1.07998 * 120.00107 * 180.02562 * 17 16 15 19 19 C 1.38993 * 120.00162 * 0.02562 * 17 16 15 20 20 N 1.31297 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00021 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46853 * 60.00363 * 21 19 17 23 23 H 1.48498 * 109.47144 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47128 * 300.00709 * 21 19 17 25 25 C 1.35679 * 126.08545 * 179.97438 * 13 12 10 26 26 C 1.38151 * 119.96265 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46711 * 269.97874 * 1 2 3 28 28 H 1.08996 * 109.46942 * 29.98001 * 1 2 3 29 29 H 1.09002 * 109.46795 * 149.97700 * 1 2 3 30 30 H 1.08000 * 119.94149 * 359.97438 * 3 2 1 31 31 H 1.08000 * 119.97834 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47232 * 300.00400 * 9 8 7 33 33 H 1.09008 * 109.46822 * 60.00182 * 9 8 7 34 34 H 0.97006 * 119.99936 * 0.02562 * 12 10 9 35 35 H 1.08001 * 125.81034 * 359.96683 * 14 13 12 36 36 H 0.97000 * 119.99734 * 179.97438 * 20 19 17 37 37 H 1.07999 * 126.24679 * 359.97438 * 25 13 12 38 38 H 1.07995 * 120.02562 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5801 1.2018 0.0005 5 6 4.2755 0.0069 0.0001 6 17 6.0115 0.0118 0.0075 7 6 3.5840 -1.1968 -0.0003 8 8 4.2650 -2.3732 -0.0002 9 6 3.4881 -3.5725 -0.0012 10 6 4.4074 -4.7666 -0.0003 11 8 5.6098 -4.6063 0.0016 12 7 3.8937 -6.0125 -0.0015 13 6 4.7513 -7.1266 -0.0012 14 6 6.1573 -7.0895 -0.0057 15 7 6.6029 -8.3205 0.0002 16 7 5.5037 -9.1886 -0.0015 17 6 5.5573 -10.5608 -0.0026 18 1 4.6438 -11.1369 -0.0043 19 6 6.7872 -11.2083 -0.0014 20 7 7.8978 -10.5079 0.0012 21 14 6.8601 -13.0749 -0.0021 22 1 6.1814 -13.5962 -1.2157 23 1 8.2784 -13.5149 0.0000 24 1 6.1784 -13.5973 1.2092 25 6 4.3700 -8.4287 -0.0019 26 6 2.1969 -1.1969 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6560 2.1324 -0.0004 31 1 4.1171 2.1388 0.0010 32 1 2.8586 -3.5983 0.8882 33 1 2.8600 -3.5977 -0.8918 34 1 2.9322 -6.1407 -0.0034 35 1 6.7659 -6.1973 -0.0106 36 1 8.7561 -10.9598 0.0024 37 1 3.3546 -8.7967 -0.0023 38 1 1.6568 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747438009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:41 Heat of formation + Delta-G solvation = 10.265115 kcal Electronic energy + Delta-G solvation = -24669.840111 eV Core-core repulsion = 20732.874481 eV Total energy + Delta-G solvation = -3936.965630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82076 -41.31991 -40.13468 -38.52880 -37.40141 -35.95150 -35.00478 -33.41647 -32.30887 -31.41344 -30.41272 -28.88452 -27.56444 -26.61397 -23.82066 -22.89415 -22.58568 -21.91439 -21.22377 -19.45399 -18.92393 -18.26577 -17.44922 -17.41742 -17.33538 -16.86609 -16.70403 -15.85088 -15.76457 -15.23951 -15.10613 -15.05576 -14.76716 -14.62035 -14.44578 -13.83704 -13.69845 -13.47912 -13.31655 -13.22055 -12.87820 -12.86876 -12.48657 -12.43958 -12.18855 -12.14238 -11.87626 -11.79400 -11.76800 -11.01646 -10.84773 -10.70766 -10.11192 -9.77804 -9.15968 -8.55398 -8.46779 -6.24863 0.12391 0.31975 1.19687 1.22975 1.39281 1.48960 1.53032 1.57692 1.85068 2.13914 2.48206 2.59695 2.60875 2.92198 3.09406 3.61911 3.77513 3.89175 3.99981 4.12320 4.14716 4.28107 4.42443 4.45346 4.59744 4.68633 4.80133 4.91885 4.99635 5.05797 5.07636 5.20181 5.28518 5.29182 5.42238 5.55066 5.72568 5.95372 6.19421 6.31349 6.70331 6.73412 7.34714 7.46876 7.67329 8.52415 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.002095 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.170347 B =13361.672521 C =14410.393014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.041 4.041 3 C -0.146 4.146 4 C -0.072 4.072 5 C -0.103 4.103 6 Cl -0.081 7.081 7 C 0.122 3.878 8 O -0.312 6.312 9 C 0.055 3.945 10 C 0.494 3.506 11 O -0.566 6.566 12 N -0.606 5.606 13 C -0.044 4.044 14 C -0.063 4.063 15 N -0.312 5.312 16 N -0.168 5.168 17 C -0.353 4.353 18 H 0.144 0.856 19 C -0.009 4.009 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.252 1.252 25 C -0.076 4.076 26 C -0.203 4.203 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.153 0.847 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.426 0.574 35 H 0.162 0.838 36 H 0.276 0.724 37 H 0.194 0.806 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.792 19.538 -0.002 28.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.041 4.041 3 C -0.165 4.165 4 C -0.090 4.090 5 C -0.130 4.130 6 Cl -0.052 7.052 7 C 0.076 3.924 8 O -0.224 6.224 9 C -0.023 4.023 10 C 0.281 3.719 11 O -0.445 6.445 12 N -0.254 5.254 13 C -0.150 4.150 14 C -0.239 4.239 15 N -0.144 5.144 16 N 0.063 4.937 17 C -0.484 4.484 18 H 0.161 0.839 19 C -0.220 4.220 20 N -0.454 5.454 21 Si 0.839 3.161 22 H -0.176 1.176 23 H -0.205 1.205 24 H -0.176 1.176 25 C -0.226 4.226 26 C -0.221 4.221 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.264 0.736 35 H 0.179 0.821 36 H 0.085 0.915 37 H 0.211 0.789 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.320 18.876 0.004 26.305 hybrid contribution -0.067 -0.259 0.006 0.268 sum -18.387 18.617 0.010 26.167 Atomic orbital electron populations 1.20924 0.88040 1.04468 1.03789 1.20231 0.98102 0.91777 0.93984 1.21304 0.92524 0.99439 1.03188 1.21167 0.95053 0.95710 0.97107 1.20572 0.84695 0.93587 1.14156 1.98377 1.10665 1.98922 1.97270 1.19002 0.91583 0.84471 0.97329 1.86218 1.35527 1.12206 1.88491 1.22557 0.92248 0.80331 1.07152 1.20747 0.89172 0.84506 0.77466 1.90664 1.17899 1.85826 1.50063 1.42127 1.09563 1.02138 1.71531 1.17263 0.89538 0.86662 1.21535 1.24145 0.94199 0.96016 1.09499 1.78173 1.10258 0.98451 1.27538 1.44863 1.02721 1.05800 1.40307 1.20612 0.96770 0.77067 1.53979 0.83861 1.26930 0.93888 1.07078 0.94148 1.70409 0.98757 1.38916 1.37361 0.84637 0.78058 0.73057 0.80355 1.17580 1.20546 1.17596 1.22032 0.93520 0.89341 1.17713 1.21431 0.90522 1.01381 1.08790 0.89547 0.89740 0.90172 0.82089 0.82898 0.85186 0.85168 0.73623 0.82130 0.91453 0.78903 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 71.24 0.71 0.11 16 2 C -0.04 -0.48 5.88 -19.88 -0.12 -0.60 16 3 C -0.15 -1.76 9.70 22.28 0.22 -1.55 16 4 C -0.07 -1.20 9.83 22.28 0.22 -0.98 16 5 C -0.10 -2.45 6.33 22.41 0.14 -2.31 16 6 Cl -0.08 -2.29 28.50 -2.72 -0.08 -2.36 16 7 C 0.12 2.85 6.68 22.52 0.15 3.00 16 8 O -0.31 -9.00 9.13 -73.73 -0.67 -9.67 16 9 C 0.05 1.16 5.22 71.23 0.37 1.54 16 10 C 0.49 16.75 7.88 87.66 0.69 17.44 16 11 O -0.57 -26.44 13.65 15.91 0.22 -26.23 16 12 N -0.61 -19.43 5.47 -303.93 -1.66 -21.09 16 13 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 14 C -0.06 -3.55 10.85 85.42 0.93 -2.62 16 15 N -0.31 -19.19 10.40 -56.46 -0.59 -19.78 16 16 N -0.17 -9.33 3.74 -190.01 -0.71 -10.04 16 17 C -0.35 -18.62 10.25 84.02 0.86 -17.75 16 18 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 19 C -0.01 -0.47 5.50 84.95 0.47 0.00 16 20 N -0.83 -48.46 11.81 21.66 0.26 -48.20 16 21 Si 1.02 38.62 29.55 68.60 2.03 40.64 16 22 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 23 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 25 C -0.08 -3.41 11.49 83.37 0.96 -2.46 16 26 C -0.20 -3.07 8.69 22.36 0.19 -2.88 16 27 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.08 0.25 8.08 -2.39 -0.02 0.23 16 29 H 0.08 0.30 8.08 -2.39 -0.02 0.28 16 30 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.13 1.74 7.66 -2.39 -0.02 1.72 16 33 H 0.13 1.74 7.66 -2.38 -0.02 1.72 16 34 H 0.43 8.65 8.83 -92.70 -0.82 7.83 16 35 H 0.16 9.30 5.92 -2.91 -0.02 9.29 16 36 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.19 6.58 8.06 -2.91 -0.02 6.55 16 38 H 0.16 1.47 6.30 -2.91 -0.02 1.45 16 Total: -1.00 -86.05 349.76 5.15 -80.90 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.31 Total: 26.62 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 6.05 Total: -10.79 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -2.70 Total: -99.11 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.46 Total: -35.90 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.36 kcal Total: -86.05 5.15 -80.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747438009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.161 kcal (2) G-P(sol) polarization free energy of solvation -86.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds