Wall clock time and date at job start Tue Mar 31 2020 18:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47321 * 272.66965 * 3 2 1 5 5 N 1.46900 * 109.47110 * 183.54242 * 4 3 2 6 6 C 1.46906 * 110.99998 * 195.93476 * 5 4 3 7 7 C 1.50702 * 109.46907 * 66.04513 * 6 5 4 8 8 H 1.08002 * 120.00499 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99919 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00208 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99986 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46821 * 90.00337 * 11 9 7 13 13 H 1.48506 * 109.47381 * 210.00150 * 11 9 7 14 14 H 1.48497 * 109.47255 * 330.00225 * 11 9 7 15 15 C 1.46900 * 110.99987 * 71.98549 * 5 4 3 16 16 N 1.46502 * 109.47293 * 136.93445 * 15 5 4 17 17 C 1.34238 * 121.38039 * 82.09218 * 16 15 5 18 18 O 1.21830 * 127.05719 * 359.94116 * 17 16 15 19 19 S 1.72212 * 105.88456 * 179.97438 * 17 16 15 20 20 C 1.77231 * 94.84513 * 359.97438 * 19 17 16 21 21 C 1.32568 * 105.32053 * 359.76635 * 20 19 17 22 22 C 1.50693 * 121.64713 * 180.19305 * 21 20 19 23 23 F 1.39908 * 109.47125 * 353.71857 * 22 21 20 24 24 F 1.39904 * 109.47438 * 113.71547 * 22 21 20 25 25 F 1.39900 * 109.47370 * 233.71464 * 22 21 20 26 26 H 1.09007 * 109.47105 * 152.67161 * 3 2 1 27 27 H 1.09001 * 109.47024 * 32.67697 * 3 2 1 28 28 H 1.09002 * 109.47133 * 63.54852 * 4 3 2 29 29 H 1.08995 * 109.47647 * 303.54468 * 4 3 2 30 30 H 1.08998 * 109.47045 * 186.04362 * 6 5 4 31 31 H 1.09001 * 109.46984 * 306.05177 * 6 5 4 32 32 H 0.96994 * 120.00311 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46662 * 256.93083 * 15 5 4 34 34 H 1.09002 * 109.47201 * 16.93068 * 15 5 4 35 35 H 1.08000 * 127.33608 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0663 1.4409 5 7 4.5845 0.0198 1.4457 6 6 5.1331 -0.4129 2.7380 7 6 4.8595 -1.8820 2.9332 8 1 4.3314 -2.4387 2.1731 9 6 5.2834 -2.5154 4.0821 10 7 5.0451 -3.7976 4.2523 11 14 6.1962 -1.5525 5.3970 12 1 5.2207 -0.9891 6.3647 13 1 7.1352 -2.4556 6.1098 14 1 6.9583 -0.4475 4.7620 15 6 5.0332 1.3781 1.1117 16 7 6.1266 1.7652 2.0067 17 6 7.3912 1.3810 1.7721 18 8 7.7915 0.6995 0.8450 19 16 8.3315 2.0485 3.0512 20 6 6.9580 2.8274 3.8561 21 6 5.9027 2.5360 3.1085 22 6 4.5229 3.0276 3.4625 23 9 4.5596 3.6627 4.7086 24 9 4.0869 3.9338 2.4900 25 9 3.6412 1.9428 3.5177 26 1 2.9709 0.9138 -0.4718 27 1 2.9717 -0.8642 -0.5548 28 1 2.8080 -1.0086 1.8926 29 1 2.7035 0.7643 2.0121 30 1 6.2089 -0.2386 2.7527 31 1 4.6619 0.1542 3.5408 32 1 5.3436 -4.2433 5.0604 33 1 5.3829 1.4017 0.0796 34 1 4.2030 2.0744 1.2300 35 1 6.9774 3.4176 4.7603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749938749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:37 Heat of formation + Delta-G solvation = -84.907901 kcal Electronic energy + Delta-G solvation = -28482.590407 eV Core-core repulsion = 24001.684731 eV Total energy + Delta-G solvation = -4480.905675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.57197 -48.07246 -47.98468 -41.26546 -37.71173 -37.25653 -36.07386 -32.77238 -32.17095 -30.70880 -28.87915 -27.25086 -25.33889 -23.86320 -23.07977 -21.19951 -20.34718 -19.70389 -18.87454 -18.51062 -17.53022 -17.52057 -17.09952 -16.63834 -16.09881 -15.48752 -15.09471 -14.86655 -14.80015 -14.62637 -14.48341 -14.39284 -14.28098 -14.14895 -13.98761 -13.60636 -13.34591 -13.14240 -12.94126 -12.65117 -12.44804 -12.15616 -12.06115 -11.96590 -11.49827 -11.26648 -10.89372 -10.68534 -10.61101 -10.12362 -10.02366 -9.74227 -9.40962 -8.70197 -8.34085 -7.81968 -6.16423 -4.15103 0.73109 0.83185 1.25355 1.97298 2.19005 2.58498 2.86762 2.92580 3.18412 3.24985 3.27615 3.28959 3.73319 3.92309 4.00963 4.31105 4.52858 4.64355 4.83716 4.98534 5.14886 5.18477 5.27407 5.38402 5.55104 5.63851 6.01714 6.23718 6.38581 6.57469 6.64775 7.18373 7.26185 7.50182 7.65787 7.70763 8.45276 8.90042 9.43594 10.96052 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.007455 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.920262 B = 3755.172200 C = 5111.577306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.217 3.783 3 C -0.027 4.027 4 C 0.057 3.943 5 N -0.521 5.521 6 C 0.160 3.840 7 C -0.513 4.513 8 H 0.084 0.916 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.862 3.138 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.256 3.744 16 N -0.525 5.525 17 C 0.499 3.501 18 O -0.438 6.438 19 S 0.039 5.961 20 C -0.167 4.167 21 C 0.010 3.990 22 C 0.530 3.470 23 F -0.160 7.160 24 F -0.168 7.168 25 F -0.154 7.154 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.042 0.958 30 H 0.026 0.974 31 H -0.001 1.001 32 H 0.265 0.735 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 17.620 -1.828 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.101 4.101 3 C -0.068 4.068 4 C -0.073 4.073 5 N -0.247 5.247 6 C 0.034 3.966 7 C -0.551 4.551 8 H 0.102 0.898 9 C -0.128 4.128 10 N -0.531 5.531 11 Si 0.689 3.311 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.188 1.188 15 C 0.042 3.958 16 N -0.247 5.247 17 C 0.179 3.821 18 O -0.313 6.313 19 S 0.284 5.716 20 C -0.309 4.309 21 C -0.105 4.105 22 C 0.472 3.528 23 F -0.141 7.141 24 F -0.149 7.149 25 F -0.135 7.135 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.085 0.915 35 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.292 16.597 -2.462 17.098 hybrid contribution -0.954 0.972 1.288 1.874 sum 2.338 17.569 -1.174 17.763 Atomic orbital electron populations 1.81183 1.13143 1.09479 1.08802 1.29219 0.95297 0.92692 0.92906 1.19382 0.80888 1.05810 1.00709 1.22198 0.87448 1.04522 0.93089 1.62558 1.08375 1.17499 1.36256 1.20339 0.94841 0.97793 0.83577 1.20896 1.37863 0.91456 1.04858 0.89772 1.24838 0.95440 0.94719 0.97825 1.69867 1.46504 1.09217 1.27486 0.87044 0.80585 0.80799 0.82685 1.20095 1.20761 1.18793 1.23214 0.86657 0.91782 0.94098 1.46146 1.10511 1.45056 1.23025 1.21222 0.84117 0.85219 0.91533 1.91017 1.71042 1.37462 1.31789 1.85243 1.10984 1.52984 1.22408 1.25231 0.93188 1.07504 1.04929 1.19153 0.94768 1.02680 0.93897 1.17542 0.84177 0.75902 0.75165 1.93228 1.96528 1.82346 1.41990 1.93249 1.90735 1.68176 1.62733 1.93323 1.70642 1.53626 1.95892 0.88267 0.86146 0.87174 0.93997 0.95599 0.98387 0.92477 0.87066 0.91513 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.34 18.54 42.15 0.78 -6.56 16 2 C 0.22 2.98 15.43 -20.76 -0.32 2.66 16 3 C -0.03 -0.31 5.82 -29.52 -0.17 -0.49 16 4 C 0.06 0.88 4.39 -3.83 -0.02 0.86 16 5 N -0.52 -9.12 4.66 -239.98 -1.12 -10.24 16 6 C 0.16 3.47 2.50 -4.97 -0.01 3.46 16 7 C -0.51 -13.55 8.84 -34.44 -0.30 -13.85 16 8 H 0.08 2.40 7.50 -52.49 -0.39 2.01 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 11 Si 0.86 20.44 27.47 -169.99 -4.67 15.77 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 15 C 0.26 3.60 4.72 -63.31 -0.30 3.31 16 16 N -0.52 -7.88 1.53 -120.56 -0.18 -8.07 16 17 C 0.50 8.25 6.35 53.81 0.34 8.59 16 18 O -0.44 -8.45 17.67 5.07 0.09 -8.36 16 19 S 0.04 0.52 22.97 -107.50 -2.47 -1.95 16 20 C -0.17 -1.90 10.73 28.83 0.31 -1.59 16 21 C 0.01 0.13 5.23 -82.51 -0.43 -0.30 16 22 C 0.53 6.51 2.79 36.00 0.10 6.61 16 23 F -0.16 -1.78 16.35 2.25 0.04 -1.74 16 24 F -0.17 -1.85 16.13 2.25 0.04 -1.81 16 25 F -0.15 -2.25 11.08 2.25 0.02 -2.23 16 26 H 0.10 0.87 7.50 -51.93 -0.39 0.48 16 27 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.11 2.03 6.59 -51.93 -0.34 1.69 16 29 H 0.04 0.62 5.63 -51.93 -0.29 0.32 16 30 H 0.03 0.60 4.39 -51.93 -0.23 0.37 16 31 H 0.00 -0.03 4.79 -51.93 -0.25 -0.28 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.11 1.41 8.00 -51.93 -0.42 1.00 16 34 H 0.07 0.79 4.85 -51.93 -0.25 0.54 16 35 H 0.21 1.57 7.68 -52.49 -0.40 1.17 16 LS Contribution 316.75 15.07 4.77 4.77 Total: -1.00 -32.01 316.75 -5.38 -37.39 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.55 Total: -2.56 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.90 Total: 11.22 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.25 Total: -50.49 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.10 Total: -5.78 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.47 Total: -1.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.01 -5.38 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749938749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.520 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds