Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47321 * 272.66965 * 3 2 1 5 5 N 1.46900 * 109.47110 * 183.54242 * 4 3 2 6 6 C 1.46906 * 110.99998 * 195.93476 * 5 4 3 7 7 C 1.50702 * 109.46907 * 66.04513 * 6 5 4 8 8 H 1.08002 * 120.00499 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99919 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00208 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99986 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46821 * 90.00337 * 11 9 7 13 13 H 1.48506 * 109.47381 * 210.00150 * 11 9 7 14 14 H 1.48497 * 109.47255 * 330.00225 * 11 9 7 15 15 C 1.46900 * 110.99987 * 71.98549 * 5 4 3 16 16 N 1.46502 * 109.47293 * 136.93445 * 15 5 4 17 17 C 1.34238 * 121.38039 * 82.09218 * 16 15 5 18 18 O 1.21830 * 127.05719 * 359.94116 * 17 16 15 19 19 S 1.72212 * 105.88456 * 179.97438 * 17 16 15 20 20 C 1.77231 * 94.84513 * 359.97438 * 19 17 16 21 21 C 1.32568 * 105.32053 * 359.76635 * 20 19 17 22 22 C 1.50693 * 121.64713 * 180.19305 * 21 20 19 23 23 F 1.39908 * 109.47125 * 353.71857 * 22 21 20 24 24 F 1.39904 * 109.47438 * 113.71547 * 22 21 20 25 25 F 1.39900 * 109.47370 * 233.71464 * 22 21 20 26 26 H 1.09007 * 109.47105 * 152.67161 * 3 2 1 27 27 H 1.09001 * 109.47024 * 32.67697 * 3 2 1 28 28 H 1.09002 * 109.47133 * 63.54852 * 4 3 2 29 29 H 1.08995 * 109.47647 * 303.54468 * 4 3 2 30 30 H 1.08998 * 109.47045 * 186.04362 * 6 5 4 31 31 H 1.09001 * 109.46984 * 306.05177 * 6 5 4 32 32 H 0.96994 * 120.00311 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46662 * 256.93083 * 15 5 4 34 34 H 1.09002 * 109.47201 * 16.93068 * 15 5 4 35 35 H 1.08000 * 127.33608 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.0663 1.4409 5 7 4.5845 0.0198 1.4457 6 6 5.1331 -0.4129 2.7380 7 6 4.8595 -1.8820 2.9332 8 1 4.3314 -2.4387 2.1731 9 6 5.2834 -2.5154 4.0821 10 7 5.0451 -3.7976 4.2523 11 14 6.1962 -1.5525 5.3970 12 1 5.2207 -0.9891 6.3647 13 1 7.1352 -2.4556 6.1098 14 1 6.9583 -0.4475 4.7620 15 6 5.0332 1.3781 1.1117 16 7 6.1266 1.7652 2.0067 17 6 7.3912 1.3810 1.7721 18 8 7.7915 0.6995 0.8450 19 16 8.3315 2.0485 3.0512 20 6 6.9580 2.8274 3.8561 21 6 5.9027 2.5360 3.1085 22 6 4.5229 3.0276 3.4625 23 9 4.5596 3.6627 4.7086 24 9 4.0869 3.9338 2.4900 25 9 3.6412 1.9428 3.5177 26 1 2.9709 0.9138 -0.4718 27 1 2.9717 -0.8642 -0.5548 28 1 2.8080 -1.0086 1.8926 29 1 2.7035 0.7643 2.0121 30 1 6.2089 -0.2386 2.7527 31 1 4.6619 0.1542 3.5408 32 1 5.3436 -4.2433 5.0604 33 1 5.3829 1.4017 0.0796 34 1 4.2030 2.0744 1.2300 35 1 6.9774 3.4176 4.7603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749938749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = -106.766203 kcal Electronic energy + Delta-G solvation = -28483.538254 eV Core-core repulsion = 24001.684731 eV Total energy + Delta-G solvation = -4481.853522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.066 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.50601 -49.00330 -48.91622 -42.40291 -38.98185 -38.44966 -37.33370 -34.76319 -33.24417 -32.06489 -30.27067 -28.53912 -26.52879 -24.98947 -24.67741 -22.39229 -21.64123 -20.76772 -19.82364 -19.47733 -19.27648 -18.69871 -18.16584 -17.77506 -17.55891 -16.67547 -16.40627 -16.11471 -15.92566 -15.76025 -15.57303 -15.48738 -15.31319 -15.16493 -15.10318 -14.93335 -14.68094 -14.28018 -14.26645 -14.01866 -13.77493 -13.55846 -13.35776 -13.20801 -12.78374 -12.69822 -12.49897 -12.14214 -11.89343 -11.80599 -11.43605 -11.30102 -10.89153 -10.77536 -9.47127 -9.16230 -8.27886 -6.30216 -0.36018 -0.14244 0.23909 0.78395 1.19347 1.29959 1.33348 1.41355 1.57062 1.72221 1.81440 2.32761 2.33966 2.75594 2.80679 3.03606 3.06482 3.40192 3.56069 3.81811 4.03847 4.16418 4.19301 4.34032 4.49212 4.59273 4.69768 4.86554 5.08518 5.14774 5.27856 5.51015 5.80768 6.00235 6.20107 6.47515 6.59474 6.76473 7.32134 8.88007 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.007455 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.920262 B = 3755.172200 C = 5111.577306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.241 3.759 3 C -0.014 4.014 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.177 3.823 7 C -0.511 4.511 8 H 0.046 0.954 9 C 0.011 3.989 10 N -0.945 5.945 11 Si 0.922 3.078 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.239 1.239 15 C 0.254 3.746 16 N -0.529 5.529 17 C 0.478 3.522 18 O -0.483 6.483 19 S 0.063 5.937 20 C -0.139 4.139 21 C -0.019 4.019 22 C 0.537 3.463 23 F -0.150 7.150 24 F -0.159 7.159 25 F -0.170 7.170 26 H 0.141 0.859 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.006 0.994 32 H 0.265 0.735 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 20.891 -1.058 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.076 4.076 3 C -0.055 4.055 4 C -0.068 4.068 5 N -0.262 5.262 6 C 0.050 3.950 7 C -0.550 4.550 8 H 0.064 0.936 9 C -0.187 4.187 10 N -0.586 5.586 11 Si 0.745 3.255 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.162 1.162 15 C 0.041 3.959 16 N -0.252 5.252 17 C 0.161 3.839 18 O -0.362 6.362 19 S 0.309 5.691 20 C -0.280 4.280 21 C -0.132 4.132 22 C 0.480 3.520 23 F -0.131 7.131 24 F -0.140 7.140 25 F -0.152 7.152 26 H 0.158 0.842 27 H 0.147 0.853 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.141 19.926 -1.684 20.421 hybrid contribution -1.210 -0.001 1.029 1.589 sum 2.931 19.924 -0.655 20.149 Atomic orbital electron populations 1.81209 1.14592 1.11266 1.10194 1.29476 0.95431 0.91180 0.91533 1.19396 0.79268 1.08293 0.98503 1.22068 0.86499 1.02807 0.95455 1.62352 1.09357 1.20455 1.34030 1.19947 0.94519 0.94563 0.85939 1.21226 1.36185 0.94004 1.03545 0.93582 1.25745 0.96732 0.95614 1.00576 1.70035 1.48753 1.11314 1.28454 0.86073 0.79600 0.79967 0.79839 1.18810 1.21085 1.16249 1.23324 0.87466 0.90219 0.94861 1.46142 1.10220 1.45187 1.23647 1.21688 0.84919 0.85312 0.92022 1.90988 1.72236 1.39398 1.33622 1.85214 1.10760 1.52206 1.20940 1.25887 0.91438 1.05662 1.04970 1.19388 0.95830 1.03863 0.94139 1.17372 0.83378 0.75642 0.75651 1.93250 1.96430 1.82035 1.41373 1.93270 1.90592 1.67701 1.62428 1.93286 1.71162 1.54704 1.96013 0.84181 0.85307 0.91143 0.93015 0.96322 0.97686 0.92640 0.85560 0.88875 0.73710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.94 18.54 20.01 0.37 -15.57 16 2 C 0.24 6.34 15.43 89.44 1.38 7.72 16 3 C -0.01 -0.31 5.82 28.79 0.17 -0.14 16 4 C 0.06 1.83 4.39 86.30 0.38 2.21 16 5 N -0.54 -18.20 4.66 -913.15 -4.25 -22.46 16 6 C 0.18 7.55 2.50 85.56 0.21 7.76 16 7 C -0.51 -27.71 8.84 25.60 0.23 -27.49 16 8 H 0.05 2.77 7.50 -2.91 -0.02 2.75 16 9 C 0.01 0.62 5.47 84.65 0.46 1.08 16 10 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 11 Si 0.92 41.65 27.47 68.60 1.88 43.53 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 14 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 15 C 0.25 6.54 4.72 170.81 0.81 7.35 16 16 N -0.53 -14.56 1.53 -653.82 -1.00 -15.56 16 17 C 0.48 14.98 6.35 129.88 0.83 15.81 16 18 O -0.48 -18.46 17.67 -4.76 -0.08 -18.54 16 19 S 0.06 1.49 22.97 -56.49 -1.30 0.19 16 20 C -0.14 -2.52 10.73 66.67 0.72 -1.80 16 21 C -0.02 -0.43 5.23 40.71 0.21 -0.22 16 22 C 0.54 11.25 2.79 71.23 0.20 11.45 16 23 F -0.15 -2.71 16.35 44.97 0.74 -1.97 16 24 F -0.16 -2.91 16.13 44.97 0.73 -2.18 16 25 F -0.17 -4.53 11.08 44.97 0.50 -4.03 16 26 H 0.14 1.91 7.50 -2.38 -0.02 1.89 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.07 2.68 6.59 -2.39 -0.02 2.67 16 29 H 0.05 1.44 5.63 -2.39 -0.01 1.43 16 30 H 0.02 0.84 4.39 -2.39 -0.01 0.83 16 31 H 0.01 0.23 4.79 -2.39 -0.01 0.22 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.13 2.88 8.00 -2.39 -0.02 2.86 16 34 H 0.09 1.89 4.85 -2.39 -0.01 1.88 16 35 H 0.25 2.25 7.68 -2.91 -0.02 2.23 16 Total: -1.00 -73.06 316.75 4.60 -68.47 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.13 Total: 1.96 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 5.59 Total: 23.73 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.59 Total: -111.17 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.08 Total: -18.54 kcal Atomic # 9 Polarization: -10.14 SS G_CDS: 1.96 Total: -8.18 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -1.30 Total: 0.19 kcal Total: -73.06 4.60 -68.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749938749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.300 kcal (2) G-P(sol) polarization free energy of solvation -73.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds