Wall clock time and date at job start Tue Mar 31 2020 18:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34078 * 125.12563 * 2 1 4 4 C 1.38076 * 107.92986 * 180.02562 * 3 2 1 5 5 C 1.47037 * 126.83207 * 179.97438 * 4 3 2 6 6 O 1.21561 * 120.00164 * 180.02562 * 5 4 3 7 7 O 1.34796 * 120.00412 * 0.02562 * 5 4 3 8 8 C 1.45199 * 117.00245 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46962 * 179.97438 * 8 7 5 10 10 O 1.21287 * 120.00241 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99758 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99515 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00325 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99859 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00001 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 119.99702 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47120 * 89.99715 * 16 14 12 18 18 H 1.48500 * 109.46846 * 209.99939 * 16 14 12 19 19 H 1.48502 * 109.47185 * 329.99495 * 16 14 12 20 20 C 1.46791 * 106.33602 * 359.97438 * 4 3 2 21 21 C 1.47694 * 126.54654 * 179.97438 * 20 4 3 22 22 C 1.34857 * 125.27279 * 144.99685 * 21 20 4 23 23 C 1.37932 * 114.69648 * 179.71467 * 22 21 20 24 24 C 1.33641 * 115.07226 * 0.25590 * 23 22 21 25 25 S 1.75861 * 109.76198 * 359.97438 * 24 23 22 26 26 N 1.31558 * 106.90865 * 0.26270 * 20 4 3 27 27 H 1.08997 * 109.46788 * 90.00260 * 1 2 3 28 28 H 1.09000 * 109.46926 * 209.99767 * 1 2 3 29 29 H 1.08999 * 109.47499 * 330.00314 * 1 2 3 30 30 H 1.08004 * 126.03445 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46959 * 299.99800 * 8 7 5 32 32 H 1.09000 * 109.47139 * 59.99903 * 8 7 5 33 33 H 0.96990 * 120.00052 * 0.02562 * 11 9 8 34 34 H 0.97006 * 119.99558 * 180.02562 * 15 14 12 35 35 H 1.08002 * 122.65489 * 359.97438 * 22 21 20 36 36 H 1.08001 * 122.46881 * 180.26821 * 23 22 21 37 37 H 1.08000 * 125.11843 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2365 1.0966 0.0000 4 6 3.5555 0.6884 -0.0006 5 6 4.7455 1.5521 -0.0013 6 8 5.8558 1.0572 -0.0023 7 8 4.6053 2.8927 -0.0010 8 6 5.8235 3.6829 -0.0012 9 6 5.4717 5.1482 -0.0013 10 8 4.3088 5.4927 -0.0008 11 7 6.4494 6.0760 -0.0010 12 6 6.1292 7.4091 -0.0017 13 1 5.0937 7.7158 -0.0021 14 6 7.1372 8.3656 -0.0008 15 7 6.8303 9.6434 -0.0010 16 14 8.9282 7.8350 0.0006 17 1 9.4039 7.6945 -1.3991 18 1 9.7466 8.8570 0.7013 19 1 9.0579 6.5319 0.7007 20 6 3.5335 -0.7793 -0.0003 21 6 4.7067 -1.6765 -0.0013 22 6 4.7780 -2.8659 0.6304 23 6 5.9787 -3.5276 0.4790 24 6 6.8877 -2.8890 -0.2639 25 16 6.2279 -1.3584 -0.8249 26 7 2.2692 -1.1430 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.8877 2.1188 0.0004 31 1 6.4082 3.4494 0.8886 32 1 6.4077 3.4498 -0.8914 33 1 7.3793 5.8005 -0.0010 34 1 7.5340 10.3111 -0.0007 35 1 3.9583 -3.2703 1.2057 36 1 6.1702 -4.4912 0.9277 37 1 7.8780 -3.2577 -0.4868 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768675725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:15 Heat of formation + Delta-G solvation = 7.392121 kcal Electronic energy + Delta-G solvation = -25033.483878 eV Core-core repulsion = 21098.437372 eV Total energy + Delta-G solvation = -3935.046506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42072 -39.88449 -38.24265 -37.73194 -36.02972 -34.04976 -33.82241 -31.79856 -31.17633 -29.77374 -28.54098 -26.95736 -24.81074 -24.20170 -22.98434 -21.31642 -20.46780 -19.62922 -18.93919 -18.58854 -17.98420 -17.38161 -16.53937 -16.39278 -15.92246 -15.76916 -15.52220 -15.40171 -14.86455 -14.15693 -14.06751 -13.65950 -13.42023 -13.34752 -13.09072 -12.89537 -12.70881 -12.62133 -12.35651 -12.31419 -12.20977 -12.09048 -11.34408 -11.25407 -10.79469 -10.64010 -10.44988 -10.26571 -10.09443 -10.04368 -9.66650 -9.10585 -8.65503 -8.47435 -8.28529 -8.24482 -6.38793 -3.91546 0.57206 1.17648 1.41781 1.94776 2.02803 2.13334 2.71897 2.75011 3.00109 3.04634 3.13262 3.18002 3.57780 3.98402 4.04812 4.22233 4.53779 4.57898 4.75985 4.97738 4.98620 5.03267 5.12776 5.18094 5.22279 5.37129 5.47524 5.49308 5.60309 5.70660 5.87085 5.97289 6.24581 6.35073 6.44802 6.59615 7.17950 7.46098 7.93912 8.02262 8.48814 8.84329 9.30824 9.66750 10.73512 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.002881 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.130247 B = 9717.804326 C =11555.339747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.363 5.363 3 C 0.144 3.856 4 C -0.278 4.278 5 C 0.538 3.462 6 O -0.506 6.506 7 O -0.324 6.324 8 C 0.061 3.939 9 C 0.449 3.551 10 O -0.559 6.559 11 N -0.580 5.580 12 C -0.308 4.308 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.876 5.876 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.267 1.267 20 C 0.205 3.795 21 C -0.142 4.142 22 C -0.106 4.106 23 C -0.147 4.147 24 C -0.240 4.240 25 S 0.242 5.758 26 N -0.279 5.279 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.202 0.798 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.373 0.627 34 H 0.275 0.725 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -24.836 -0.433 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.141 5.141 3 C -0.005 4.005 4 C -0.291 4.291 5 C 0.383 3.617 6 O -0.396 6.396 7 O -0.239 6.239 8 C -0.017 4.017 9 C 0.234 3.766 10 O -0.441 6.441 11 N -0.220 5.220 12 C -0.436 4.436 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.515 5.515 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.193 1.193 20 C 0.035 3.965 21 C -0.262 4.262 22 C -0.140 4.140 23 C -0.178 4.178 24 C -0.378 4.378 25 S 0.509 5.491 26 N -0.099 5.099 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.219 0.781 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.206 0.794 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.372 -24.232 -1.354 25.092 hybrid contribution 1.522 -0.641 1.014 1.938 sum -4.850 -24.872 -0.339 25.343 Atomic orbital electron populations 1.22087 0.72909 1.05324 1.04247 1.48188 1.07501 1.03322 1.55115 1.23350 0.90109 0.94058 0.93027 1.20292 0.91423 0.91307 1.26093 1.19941 0.87951 0.81132 0.72685 1.90804 1.26592 1.74719 1.47534 1.86585 1.36370 1.17245 1.83662 1.22719 0.84810 0.90437 1.03707 1.19215 0.86644 0.85436 0.85294 1.90583 1.18671 1.81230 1.53656 1.42035 1.06682 1.06694 1.66582 1.19416 0.97282 0.78256 1.48637 0.86048 1.25037 0.98589 0.95001 0.97271 1.69616 1.33771 0.99642 1.48485 0.86682 0.84803 0.78951 0.79112 1.19395 1.19988 1.19273 1.20646 0.90207 0.89248 0.96349 1.21739 0.96658 0.98340 1.09447 1.20244 0.98910 0.93564 1.01318 1.19912 0.93219 1.01876 1.02757 1.26247 1.04545 1.00268 1.06724 1.84900 1.03897 1.12848 1.47419 1.77483 1.00570 1.06571 1.25315 0.89920 0.88742 0.88474 0.78121 0.89329 0.89326 0.79352 0.91411 0.84373 0.84543 0.81960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.39 59.85 0.68 1.17 16 2 N -0.36 -3.72 3.95 -67.63 -0.27 -3.99 16 3 C 0.14 1.64 11.27 -16.63 -0.19 1.45 16 4 C -0.28 -3.97 6.32 -102.93 -0.65 -4.62 16 5 C 0.54 8.71 7.95 34.30 0.27 8.98 16 6 O -0.51 -8.47 12.75 -19.31 -0.25 -8.71 16 7 O -0.32 -5.76 9.60 -47.44 -0.46 -6.22 16 8 C 0.06 1.08 5.95 36.00 0.21 1.30 16 9 C 0.45 10.22 7.86 -10.99 -0.09 10.13 16 10 O -0.56 -14.97 16.08 -14.11 -0.23 -15.20 16 11 N -0.58 -13.60 5.09 -10.96 -0.06 -13.66 16 12 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 13 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 14 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 15 N -0.88 -25.03 13.96 55.50 0.77 -24.25 16 16 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 20 C 0.20 2.88 7.24 -80.67 -0.58 2.29 16 21 C -0.14 -1.91 6.10 -36.92 -0.23 -2.13 16 22 C -0.11 -1.23 10.10 -40.89 -0.41 -1.64 16 23 C -0.15 -1.48 10.16 -41.30 -0.42 -1.90 16 24 C -0.24 -2.45 11.23 29.12 0.33 -2.12 16 25 S 0.24 3.06 19.80 -107.50 -2.13 0.93 16 26 N -0.28 -3.60 12.51 34.51 0.43 -3.17 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.29 8.13 -51.93 -0.42 -0.13 16 30 H 0.20 1.83 8.06 -52.48 -0.42 1.40 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 34 H 0.28 7.24 8.31 -40.82 -0.34 6.91 16 35 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -35.33 347.82 -6.56 -41.90 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.59 Total: 7.56 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.32 Total: 5.34 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.88 Total: -45.07 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.93 Total: -30.12 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.13 Total: 0.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.33 -6.56 -41.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768675725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.287 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds