Wall clock time and date at job start Tue Mar 31 2020 19:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34159 * 125.43342 * 2 1 4 4 C 1.47054 * 105.95313 * 180.02562 * 3 2 1 5 5 C 1.47233 * 127.20109 * 179.97438 * 4 3 2 6 6 O 1.21535 * 120.00134 * 180.02562 * 5 4 3 7 7 O 1.34774 * 119.99785 * 0.02562 * 5 4 3 8 8 C 1.45206 * 116.99772 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47021 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46948 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00198 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99749 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99702 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99833 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00313 * 17 15 13 19 19 H 1.48501 * 109.47085 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00128 * 17 15 13 21 21 C 1.36499 * 105.59626 * 0.23727 * 4 3 2 22 22 C 1.50702 * 125.80413 * 179.75809 * 21 4 3 23 23 F 1.39905 * 109.47108 * 90.00317 * 22 21 4 24 24 F 1.39900 * 109.47112 * 210.00030 * 22 21 4 25 25 F 1.39896 * 109.47401 * 330.00350 * 22 21 4 26 26 O 1.33624 * 108.38206 * 359.61006 * 21 4 3 27 27 H 1.09002 * 109.46686 * 90.00001 * 1 2 3 28 28 H 1.08994 * 109.47330 * 210.00001 * 1 2 3 29 29 H 1.09000 * 109.46966 * 330.00607 * 1 2 3 30 30 H 1.08001 * 127.02149 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47122 * 299.99972 * 8 7 5 32 32 H 1.09000 * 109.47070 * 59.99997 * 8 7 5 33 33 H 0.97004 * 119.99472 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47197 * 300.00087 * 12 11 9 35 35 H 1.09004 * 109.46923 * 59.99390 * 12 11 9 36 36 H 0.97005 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0931 0.0000 4 6 3.6712 0.6027 -0.0006 5 6 4.9015 1.4115 -0.0014 6 8 5.9874 0.8658 -0.0023 7 8 4.8234 2.7569 -0.0011 8 6 6.0769 3.4899 -0.0024 9 6 5.7932 4.9700 -0.0012 10 8 4.6475 5.3679 0.0012 11 7 6.8128 5.8515 -0.0027 12 6 6.5371 7.2904 -0.0020 13 6 7.8380 8.0510 -0.0033 14 1 8.7762 7.5162 -0.0049 15 6 7.8303 9.4299 -0.0035 16 7 8.9656 10.0937 -0.0052 17 14 6.2074 10.3548 -0.0014 18 1 5.7793 10.6001 1.3992 19 1 6.3768 11.6532 -0.7019 20 1 5.1759 9.5464 -0.6999 21 6 3.5787 -0.7591 -0.0064 22 6 4.7384 -1.7215 -0.0144 23 9 5.1014 -2.0252 1.3022 24 9 4.3657 -2.8954 -0.6779 25 9 5.8246 -1.1374 -0.6747 26 8 2.2850 -1.0937 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9592 2.1229 -0.0004 31 1 6.6510 3.2296 0.8869 32 1 6.6488 3.2299 -0.8932 33 1 7.7291 5.5332 -0.0041 34 1 5.9626 7.5506 -0.8910 35 1 5.9653 7.5503 0.8889 36 1 8.9602 11.0637 -0.0049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770472178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:34 Heat of formation + Delta-G solvation = -244.711157 kcal Electronic energy + Delta-G solvation = -28254.883206 eV Core-core repulsion = 23292.002319 eV Total energy + Delta-G solvation = -4962.880887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.55894 -48.11432 -47.99441 -43.40701 -40.57141 -38.91087 -36.57646 -34.42620 -33.98671 -33.15756 -32.46572 -29.70905 -28.96803 -27.39269 -25.65628 -24.11081 -22.41752 -21.89643 -20.34057 -20.16743 -19.41071 -19.00732 -18.67013 -17.87819 -17.55459 -17.15666 -16.63100 -16.59412 -15.94402 -15.37874 -15.18608 -14.92448 -14.87820 -14.73566 -14.44305 -14.27260 -14.16395 -14.12973 -13.85513 -13.81930 -13.61919 -13.25381 -13.19661 -12.96147 -12.71163 -12.43956 -12.35940 -12.14343 -11.10532 -10.94674 -10.89399 -10.80067 -10.58051 -10.03166 -9.57705 -9.45683 -9.41653 -8.84836 -8.31861 -6.26696 -4.29971 0.16363 1.23872 1.31876 2.06783 2.45682 2.50048 2.96496 3.15942 3.22939 3.29877 3.37197 3.68770 3.70251 3.83707 3.95883 4.28137 4.31360 4.60696 4.67851 4.77041 4.89100 4.92987 5.06955 5.10173 5.10556 5.16164 5.30695 5.67096 6.02004 6.15521 6.68740 6.97031 7.03860 7.28056 7.36696 8.00437 8.37286 8.63248 8.75728 9.32094 10.85068 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.002351 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.589873 B =11908.577749 C =13065.753587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 C -0.164 4.164 4 C -0.136 4.136 5 C 0.527 3.473 6 O -0.484 6.484 7 O -0.316 6.316 8 C 0.050 3.950 9 C 0.503 3.497 10 O -0.537 6.537 11 N -0.698 5.698 12 C 0.222 3.778 13 C -0.547 4.547 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.040 4.040 22 C 0.556 3.444 23 F -0.160 7.160 24 F -0.168 7.168 25 F -0.129 7.129 26 O -0.141 6.141 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.181 0.819 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.400 0.600 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 -25.270 -0.112 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 C -0.183 4.183 4 C -0.139 4.139 5 C 0.371 3.629 6 O -0.373 6.373 7 O -0.230 6.230 8 C -0.028 4.028 9 C 0.286 3.714 10 O -0.414 6.414 11 N -0.348 5.348 12 C 0.101 3.899 13 C -0.585 4.585 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 C -0.093 4.093 22 C 0.501 3.499 23 F -0.141 7.141 24 F -0.149 7.149 25 F -0.110 7.110 26 O -0.037 6.037 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.199 0.801 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.234 0.766 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.442 -25.197 -0.113 29.552 hybrid contribution 0.194 0.492 0.033 0.530 sum -15.247 -24.705 -0.080 29.032 Atomic orbital electron populations 1.20524 0.83066 1.05188 1.04672 1.22741 0.94549 0.82771 1.02605 1.22907 0.88706 1.01024 1.05627 1.20289 0.93961 0.90673 1.08974 1.19848 0.87667 0.81659 0.73770 1.90989 1.28852 1.72646 1.44820 1.86595 1.35383 1.17718 1.83345 1.22926 0.84045 0.90499 1.05294 1.19863 0.86365 0.86674 0.78489 1.90699 1.20929 1.80016 1.49779 1.46065 1.08277 1.08132 1.72373 1.19562 0.98012 0.75250 0.97086 1.21062 0.91866 0.91800 1.53726 0.90097 1.24793 0.96703 0.97297 0.93786 1.69878 1.25726 1.08025 1.49075 0.86813 0.84120 0.79639 0.79095 1.19787 1.20834 1.18474 1.22096 0.84242 0.92766 1.10240 1.16715 0.80454 0.77546 0.75158 1.93289 1.92183 1.93114 1.35552 1.93261 1.91372 1.49480 1.80782 1.93433 1.53988 1.83249 1.80319 1.83714 1.13679 1.35746 1.70525 0.88928 0.89683 0.88057 0.80139 0.87897 0.87868 0.76622 0.95393 0.95851 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.40 36.01 0.37 0.11 16 2 C 0.02 0.17 7.28 -35.75 -0.26 -0.09 16 3 C -0.16 -1.53 10.93 -37.45 -0.41 -1.94 16 4 C -0.14 -1.60 6.27 -103.30 -0.65 -2.25 16 5 C 0.53 7.27 7.90 34.38 0.27 7.54 16 6 O -0.48 -7.21 12.99 -19.29 -0.25 -7.46 16 7 O -0.32 -4.70 9.67 -47.37 -0.46 -5.16 16 8 C 0.05 0.70 5.95 36.01 0.21 0.91 16 9 C 0.50 9.25 7.91 -10.99 -0.09 9.16 16 10 O -0.54 -11.91 16.50 -14.11 -0.23 -12.14 16 11 N -0.70 -13.46 5.55 -61.47 -0.34 -13.80 16 12 C 0.22 5.28 4.50 -5.20 -0.02 5.26 16 13 C -0.55 -14.60 9.83 -34.44 -0.34 -14.94 16 14 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 17 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 21 C -0.04 -0.44 6.70 -34.93 -0.23 -0.67 16 22 C 0.56 6.15 3.35 36.01 0.12 6.27 16 23 F -0.16 -1.80 17.30 2.25 0.04 -1.76 16 24 F -0.17 -1.71 17.29 2.25 0.04 -1.67 16 25 F -0.13 -1.63 13.48 2.25 0.03 -1.60 16 26 O -0.14 -1.33 10.50 7.71 0.08 -1.25 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.40 6.63 8.32 -40.82 -0.34 6.29 16 34 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 35 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -33.35 339.95 -4.20 -37.55 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.22 Total: -0.29 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -1.12 Total: 11.43 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.43 Total: -39.02 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.86 Total: -26.01 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.35 -4.20 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770472178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.159 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds