Wall clock time and date at job start Tue Mar 31 2020 19:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34159 * 125.43342 * 2 1 4 4 C 1.47054 * 105.95313 * 180.02562 * 3 2 1 5 5 C 1.47233 * 127.20109 * 179.97438 * 4 3 2 6 6 O 1.21535 * 120.00134 * 180.02562 * 5 4 3 7 7 O 1.34774 * 119.99785 * 0.02562 * 5 4 3 8 8 C 1.45206 * 116.99772 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47021 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00165 * 179.97438 * 11 9 8 13 13 C 1.50696 * 109.46948 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00198 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99749 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99702 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99833 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00313 * 17 15 13 19 19 H 1.48501 * 109.47085 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00128 * 17 15 13 21 21 C 1.36499 * 105.59626 * 0.23727 * 4 3 2 22 22 C 1.50702 * 125.80413 * 179.75809 * 21 4 3 23 23 F 1.39905 * 109.47108 * 90.00317 * 22 21 4 24 24 F 1.39900 * 109.47112 * 210.00030 * 22 21 4 25 25 F 1.39896 * 109.47401 * 330.00350 * 22 21 4 26 26 O 1.33624 * 108.38206 * 359.61006 * 21 4 3 27 27 H 1.09002 * 109.46686 * 90.00001 * 1 2 3 28 28 H 1.08994 * 109.47330 * 210.00001 * 1 2 3 29 29 H 1.09000 * 109.46966 * 330.00607 * 1 2 3 30 30 H 1.08001 * 127.02149 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47122 * 299.99972 * 8 7 5 32 32 H 1.09000 * 109.47070 * 59.99997 * 8 7 5 33 33 H 0.97004 * 119.99472 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47197 * 300.00087 * 12 11 9 35 35 H 1.09004 * 109.46923 * 59.99390 * 12 11 9 36 36 H 0.97005 * 119.99651 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0931 0.0000 4 6 3.6712 0.6027 -0.0006 5 6 4.9015 1.4115 -0.0014 6 8 5.9874 0.8658 -0.0023 7 8 4.8234 2.7569 -0.0011 8 6 6.0769 3.4899 -0.0024 9 6 5.7932 4.9700 -0.0012 10 8 4.6475 5.3679 0.0012 11 7 6.8128 5.8515 -0.0027 12 6 6.5371 7.2904 -0.0020 13 6 7.8380 8.0510 -0.0033 14 1 8.7762 7.5162 -0.0049 15 6 7.8303 9.4299 -0.0035 16 7 8.9656 10.0937 -0.0052 17 14 6.2074 10.3548 -0.0014 18 1 5.7793 10.6001 1.3992 19 1 6.3768 11.6532 -0.7019 20 1 5.1759 9.5464 -0.6999 21 6 3.5787 -0.7591 -0.0064 22 6 4.7384 -1.7215 -0.0144 23 9 5.1014 -2.0252 1.3022 24 9 4.3657 -2.8954 -0.6779 25 9 5.8246 -1.1374 -0.6747 26 8 2.2850 -1.0937 -0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9592 2.1229 -0.0004 31 1 6.6510 3.2296 0.8869 32 1 6.6488 3.2299 -0.8932 33 1 7.7291 5.5332 -0.0041 34 1 5.9626 7.5506 -0.8910 35 1 5.9653 7.5503 0.8889 36 1 8.9602 11.0637 -0.0049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770472178.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:33 Heat of formation + Delta-G solvation = -266.432634 kcal Electronic energy + Delta-G solvation = -28255.825120 eV Core-core repulsion = 23292.002319 eV Total energy + Delta-G solvation = -4963.822801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.42828 -48.96181 -48.89745 -44.14118 -41.70482 -40.41270 -37.72463 -36.20905 -34.71940 -34.46151 -33.79482 -31.20952 -29.65975 -28.95660 -26.51710 -25.03750 -24.04323 -22.92172 -21.74975 -21.18514 -20.30387 -19.87034 -19.55574 -19.25855 -18.88679 -18.08433 -18.05758 -17.55777 -17.23530 -16.86221 -16.28096 -16.24399 -15.93207 -15.71586 -15.70958 -15.30712 -15.05010 -15.03554 -14.97985 -14.70363 -14.57679 -14.32784 -14.26805 -13.87510 -13.84060 -13.78762 -13.69145 -13.08304 -12.93402 -12.70506 -12.02836 -11.97211 -11.92697 -11.66772 -11.39841 -11.00253 -10.92023 -10.10705 -10.04726 -8.39585 -6.47360 -0.70140 0.46083 0.62015 0.98165 1.34545 1.37314 1.47559 1.49722 1.54904 1.67893 2.28614 2.35009 2.37347 2.93631 2.95896 2.97867 3.16729 3.37292 3.62669 3.86751 3.94850 4.01572 4.06274 4.31160 4.57888 4.71130 4.74327 4.89263 4.95859 5.00994 5.22441 5.23801 5.38925 5.48492 6.05175 6.30607 6.52678 6.70282 7.10836 7.26108 8.75010 Molecular weight = 335.09amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.002351 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.589873 B =11908.577749 C =13065.753587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 C -0.180 4.180 4 C -0.155 4.155 5 C 0.530 3.470 6 O -0.500 6.500 7 O -0.329 6.329 8 C 0.057 3.943 9 C 0.507 3.493 10 O -0.575 6.575 11 N -0.696 5.696 12 C 0.233 3.767 13 C -0.548 4.548 14 H 0.061 0.939 15 C 0.025 3.975 16 N -0.931 5.931 17 Si 0.938 3.062 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.257 1.257 21 C -0.047 4.047 22 C 0.558 3.442 23 F -0.163 7.163 24 F -0.163 7.163 25 F -0.140 7.140 26 O -0.140 6.140 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.189 0.811 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.413 0.587 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.090 -26.289 -0.085 31.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.008 4.008 3 C -0.198 4.198 4 C -0.158 4.158 5 C 0.374 3.626 6 O -0.389 6.389 7 O -0.244 6.244 8 C -0.019 4.019 9 C 0.293 3.707 10 O -0.455 6.455 11 N -0.348 5.348 12 C 0.109 3.891 13 C -0.586 4.586 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.570 5.570 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.100 4.100 22 C 0.503 3.497 23 F -0.144 7.144 24 F -0.144 7.144 25 F -0.121 7.121 26 O -0.036 6.036 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.206 0.794 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.250 0.750 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.543 -26.254 -0.085 31.576 hybrid contribution 0.835 0.724 0.022 1.106 sum -16.708 -25.530 -0.063 30.511 Atomic orbital electron populations 1.20818 0.79738 1.06714 1.06200 1.23537 0.95980 0.81632 0.99623 1.23056 0.87757 1.02008 1.06988 1.20356 0.94315 0.90958 1.10215 1.20098 0.88231 0.81124 0.73122 1.90977 1.29576 1.72662 1.45696 1.86575 1.35711 1.18467 1.83640 1.22855 0.84211 0.87191 1.07659 1.20452 0.85262 0.88283 0.76749 1.90678 1.22455 1.81055 1.51329 1.45853 1.09511 1.06730 1.72671 1.19179 0.96069 0.77558 0.96253 1.21278 0.92391 0.92157 1.52810 0.92115 1.25618 0.99916 0.98409 0.93554 1.69986 1.27874 1.08571 1.50567 0.85844 0.80002 0.78494 0.79491 1.18950 1.20026 1.18090 1.21960 0.84791 0.92331 1.10966 1.16700 0.80323 0.77717 0.74959 1.93279 1.92243 1.93155 1.35723 1.93266 1.91274 1.49194 1.80668 1.93403 1.54682 1.83502 1.80545 1.83747 1.13149 1.36508 1.70172 0.87192 0.88275 0.86356 0.79388 0.85463 0.85457 0.75044 0.96349 0.96465 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.40 71.24 0.74 0.47 16 2 C 0.04 0.54 7.28 24.75 0.18 0.72 16 3 C -0.18 -3.09 10.93 23.65 0.26 -2.83 16 4 C -0.16 -3.54 6.27 -19.01 -0.12 -3.66 16 5 C 0.53 14.18 7.90 70.19 0.55 14.73 16 6 O -0.50 -14.47 12.99 19.72 0.26 -14.21 16 7 O -0.33 -9.43 9.67 -50.46 -0.49 -9.92 16 8 C 0.06 1.52 5.95 71.24 0.42 1.94 16 9 C 0.51 18.08 7.91 87.66 0.69 18.78 16 10 O -0.58 -25.16 16.50 15.76 0.26 -24.90 16 11 N -0.70 -26.26 5.55 -466.79 -2.59 -28.85 16 12 C 0.23 10.93 4.50 85.63 0.38 11.32 16 13 C -0.55 -29.42 9.83 25.60 0.25 -29.17 16 14 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 15 C 0.03 1.41 5.47 84.66 0.46 1.87 16 16 N -0.93 -54.86 13.96 21.45 0.30 -54.56 16 17 Si 0.94 42.86 27.47 68.60 1.88 44.74 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.26 -11.50 6.54 99.48 0.65 -10.84 16 21 C -0.05 -0.98 6.70 25.28 0.17 -0.81 16 22 C 0.56 12.03 3.35 71.24 0.24 12.27 16 23 F -0.16 -3.58 17.30 44.97 0.78 -2.80 16 24 F -0.16 -3.19 17.29 44.97 0.78 -2.41 16 25 F -0.14 -3.51 13.48 44.97 0.61 -2.91 16 26 O -0.14 -2.41 10.50 4.68 0.05 -2.36 16 27 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.41 13.31 8.32 -92.71 -0.77 12.54 16 34 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 35 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 36 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 Total: -1.00 -71.75 339.95 6.42 -65.33 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.34 Total: 7.22 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 4.24 Total: 25.62 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.29 Total: -83.41 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: 0.08 Total: -51.39 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 2.16 Total: -8.12 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -71.75 6.42 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770472178.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.102 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds