Wall clock time and date at job start Tue Mar 31 2020 19:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 119.99769 * 2 1 4 4 H 1.48503 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46955 * 299.99799 * 3 2 1 6 6 H 1.48496 * 109.46986 * 60.00197 * 3 2 1 7 7 C 1.38988 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.36494 * 126.06678 * 180.02562 * 9 7 2 11 11 C 1.35674 * 107.50999 * 179.97438 * 10 9 7 12 12 N 1.40598 * 126.08456 * 180.02562 * 11 10 9 13 13 C 1.34770 * 119.99959 * 179.97438 * 12 11 10 14 14 O 1.21301 * 120.00313 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99900 * 180.02562 * 13 12 11 16 16 H 1.09010 * 109.47345 * 305.00328 * 15 13 12 17 17 O 1.42898 * 109.47397 * 185.00365 * 15 13 12 18 18 C 1.53003 * 109.47339 * 65.00341 * 15 13 12 19 19 C 1.50696 * 109.47144 * 185.00248 * 18 15 13 20 20 C 1.38241 * 120.00403 * 264.71871 * 19 18 15 21 21 C 1.38218 * 120.00993 * 179.77078 * 20 19 18 22 22 C 1.38261 * 120.02778 * 0.51011 * 21 20 19 23 23 C 1.38189 * 120.01433 * 359.74919 * 22 21 20 24 24 C 1.38332 * 120.00911 * 85.00178 * 19 18 15 25 25 Cl 1.73597 * 120.00988 * 359.95113 * 24 19 18 26 26 C 1.40655 * 107.83553 * 359.97438 * 11 10 9 27 27 N 1.30910 * 108.38585 * 0.02562 * 26 11 10 28 28 H 0.97002 * 120.00119 * 359.97438 * 1 2 3 29 29 H 1.08005 * 126.24257 * 359.97438 * 10 9 7 30 30 H 0.96997 * 119.99535 * 0.02562 * 12 11 10 31 31 H 0.96699 * 114.00180 * 299.99881 * 17 15 13 32 32 H 1.09001 * 109.46979 * 305.00236 * 18 15 13 33 33 H 1.09000 * 109.46744 * 64.99899 * 18 15 13 34 34 H 1.07999 * 119.99155 * 0.02562 * 20 19 18 35 35 H 1.08003 * 119.98692 * 180.27583 * 21 20 19 36 36 H 1.08002 * 119.99269 * 179.76919 * 22 21 20 37 37 H 1.08001 * 120.00973 * 179.97438 * 23 22 21 38 38 H 1.07999 * 125.80249 * 179.73346 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8881 2.3964 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0878 -1.2036 -0.0001 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6405 -0.0005 11 6 0.8579 -4.5384 0.0000 12 7 0.9892 -5.9383 0.0007 13 6 -0.1100 -6.7181 0.0018 14 8 -1.2125 -6.2124 0.0017 15 6 0.0307 -8.2185 0.0031 16 1 0.6514 -8.5261 -0.8386 17 8 -1.2611 -8.8183 -0.1134 18 6 0.6856 -8.6683 1.3108 19 6 0.9384 -10.1530 1.2613 20 6 0.0209 -11.0291 1.8107 21 6 0.2503 -12.3912 1.7612 22 6 1.4024 -12.8779 1.1716 23 6 2.3228 -12.0028 0.6269 24 6 2.0912 -10.6393 0.6714 25 17 3.2466 -9.5394 -0.0133 26 6 -0.3512 -3.8199 0.0010 27 7 -0.0715 -2.5410 0.0004 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8708 -0.0009 30 1 1.8708 -6.3426 0.0012 31 1 -1.8678 -8.5880 0.6035 32 1 1.6315 -8.1429 1.4428 33 1 0.0235 -8.4400 2.1459 34 1 -0.8772 -10.6493 2.2750 35 1 -0.4688 -13.0756 2.1865 36 1 1.5829 -13.9421 1.1366 37 1 3.2229 -12.3830 0.1667 38 1 -1.3418 -4.2501 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772617383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:59 Heat of formation + Delta-G solvation = -8.984353 kcal Electronic energy + Delta-G solvation = -25286.134374 eV Core-core repulsion = 21348.334025 eV Total energy + Delta-G solvation = -3937.800349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.83484 -40.88099 -40.06479 -37.62893 -37.37151 -35.98156 -35.07789 -33.86612 -32.27507 -31.63101 -30.54685 -29.12372 -26.93032 -25.57673 -23.61569 -22.93609 -22.33914 -21.98316 -21.22803 -19.48444 -18.80761 -17.88551 -17.45268 -17.41404 -16.97830 -16.67925 -16.27455 -16.09173 -15.74436 -15.42676 -15.25285 -14.92112 -14.78859 -14.69749 -14.18058 -14.03784 -13.52566 -13.33574 -13.13012 -12.96131 -12.91059 -12.81397 -12.58317 -12.39169 -12.14124 -12.03515 -11.92261 -11.83242 -11.64518 -11.04765 -10.84816 -10.54099 -10.11741 -9.78628 -9.56115 -8.56315 -8.48117 -6.25425 0.21883 0.36183 1.15982 1.20764 1.39513 1.45582 1.58608 1.83514 1.99921 2.23588 2.47378 2.72005 2.88414 3.08040 3.22863 3.60947 3.77696 3.81361 3.98720 4.04785 4.21743 4.40359 4.43664 4.47291 4.57015 4.64951 4.71973 4.88607 4.99168 5.04167 5.06388 5.27679 5.32698 5.41991 5.47084 5.54861 5.92907 5.94639 6.28396 6.50279 6.70737 6.72643 7.28851 7.44903 7.66369 8.51525 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025258 B = 0.002439 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.297253 B =11475.654781 C =12311.913581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.167 5.167 10 C -0.081 4.081 11 C -0.046 4.046 12 N -0.610 5.610 13 C 0.469 3.531 14 O -0.568 6.568 15 C 0.125 3.875 16 H 0.128 0.872 17 O -0.541 6.541 18 C -0.107 4.107 19 C -0.078 4.078 20 C -0.102 4.102 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.119 4.119 24 C -0.049 4.049 25 Cl -0.075 7.075 26 C -0.059 4.059 27 N -0.310 5.310 28 H 0.276 0.724 29 H 0.187 0.813 30 H 0.416 0.584 31 H 0.391 0.609 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -24.774 4.127 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.163 1.163 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.484 4.484 8 H 0.158 0.842 9 N 0.064 4.936 10 C -0.231 4.231 11 C -0.153 4.153 12 N -0.256 5.256 13 C 0.257 3.743 14 O -0.447 6.447 15 C 0.061 3.939 16 H 0.146 0.854 17 O -0.347 6.347 18 C -0.145 4.145 19 C -0.079 4.079 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.137 4.137 24 C -0.076 4.076 25 Cl -0.046 7.046 26 C -0.234 4.234 27 N -0.142 5.142 28 H 0.086 0.914 29 H 0.204 0.796 30 H 0.253 0.747 31 H 0.241 0.759 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.163 0.837 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.173 -23.287 3.527 24.348 hybrid contribution 0.584 0.310 0.278 0.717 sum 6.757 -22.977 3.805 24.251 Atomic orbital electron populations 1.70403 1.08433 1.29055 1.37365 1.26893 0.96490 1.04367 0.94157 0.84532 0.79058 0.74381 0.78203 1.16313 1.19826 1.19718 1.20655 0.92949 0.80845 1.53908 0.84158 1.44848 1.03619 1.04803 1.40328 1.21993 0.98788 0.84260 1.18046 1.17353 0.92835 0.83666 1.21399 1.42522 1.09736 1.02505 1.70834 1.22163 0.83978 0.91306 0.76887 1.90603 1.27393 1.75702 1.51026 1.21608 0.86794 0.85136 1.00322 0.85435 1.86564 1.23142 1.70914 1.54071 1.21268 1.03284 0.92773 0.97162 1.19502 0.93820 0.95275 0.99261 1.21284 0.98634 0.93434 0.98647 1.21592 0.97933 0.95414 0.98456 1.21480 0.93476 1.00996 0.96960 1.21298 1.01312 0.90602 1.00507 1.21037 0.92535 0.91709 1.02286 1.98374 1.59020 1.63718 1.83471 1.24155 0.98980 0.90926 1.09317 1.78152 0.92026 1.16550 1.27442 0.91387 0.79626 0.74686 0.75876 0.88572 0.88573 0.83899 0.83061 0.82662 0.83726 0.81572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.92 11.81 21.66 0.26 -47.67 16 2 C -0.01 -0.39 5.50 84.95 0.47 0.07 16 3 Si 1.02 38.76 29.55 68.60 2.03 40.78 16 4 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.35 -18.73 10.25 84.01 0.86 -17.87 16 8 H 0.14 6.46 7.83 -2.91 -0.02 6.44 16 9 N -0.17 -9.33 3.74 -190.02 -0.71 -10.04 16 10 C -0.08 -3.74 11.49 83.37 0.96 -2.78 16 11 C -0.05 -2.14 6.90 37.73 0.26 -1.88 16 12 N -0.61 -20.92 5.37 -303.93 -1.63 -22.55 16 13 C 0.47 15.87 7.14 87.66 0.63 16.50 16 14 O -0.57 -24.40 13.48 15.89 0.21 -24.18 16 15 C 0.12 2.97 3.37 29.85 0.10 3.07 16 16 H 0.13 2.90 7.94 -2.38 -0.02 2.88 16 17 O -0.54 -13.30 12.70 -129.99 -1.65 -14.95 16 18 C -0.11 -2.00 4.51 29.85 0.13 -1.87 16 19 C -0.08 -1.34 4.91 -19.84 -0.10 -1.44 16 20 C -0.10 -1.46 9.63 22.27 0.21 -1.25 16 21 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 22 C -0.11 -1.22 10.05 22.26 0.22 -1.00 16 23 C -0.12 -1.64 9.83 22.29 0.22 -1.43 16 24 C -0.05 -0.85 6.31 22.32 0.14 -0.70 16 25 Cl -0.07 -1.32 27.20 -2.72 -0.07 -1.39 16 26 C -0.06 -3.22 10.85 85.42 0.93 -2.29 16 27 N -0.31 -18.83 10.40 -56.46 -0.59 -19.42 16 28 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.19 6.82 8.06 -2.91 -0.02 6.79 16 30 H 0.42 10.86 8.53 -92.71 -0.79 10.07 16 31 H 0.39 7.90 8.79 -74.06 -0.65 7.25 16 32 H 0.10 1.76 6.75 -2.39 -0.02 1.75 16 33 H 0.10 1.66 8.05 -2.39 -0.02 1.65 16 34 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.17 9.22 5.92 -2.91 -0.02 9.20 16 Total: -1.00 -77.76 348.76 2.80 -74.96 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.30 Total: 38.41 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.26 Total: -13.96 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -2.67 Total: -99.67 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.44 Total: -39.14 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.39 kcal Total: -77.76 2.80 -74.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772617383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.979 kcal (2) G-P(sol) polarization free energy of solvation -77.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds