Wall clock time and date at job start Tue Mar 31 2020 19:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47363 * 299.99681 * 3 2 1 6 6 H 1.48505 * 109.47009 * 60.00073 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47264 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.46783 * 305.00051 * 16 15 13 18 18 O 1.42897 * 109.47039 * 64.99516 * 16 15 13 19 19 C 1.50700 * 109.47215 * 184.99606 * 16 15 13 20 20 C 1.38236 * 119.99039 * 279.72930 * 19 16 15 21 21 C 1.38211 * 120.01679 * 179.72357 * 20 19 16 22 22 C 1.38356 * 119.98281 * 0.54585 * 21 20 19 23 23 Cl 1.73603 * 120.01394 * 179.74474 * 22 21 20 24 24 C 1.38354 * 119.97235 * 359.72662 * 22 21 20 25 25 C 1.38211 * 119.98874 * 359.97438 * 24 22 21 26 26 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 27 27 N 1.30910 * 108.38789 * 0.02562 * 26 11 10 28 28 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 29 29 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 30 30 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 31 31 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 32 32 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 33 33 H 0.96705 * 113.99721 * 60.00294 * 18 16 15 34 34 H 1.08001 * 119.99097 * 359.97438 * 20 19 16 35 35 H 1.07990 * 120.00965 * 180.26900 * 21 20 19 36 36 H 1.08003 * 120.00237 * 179.97438 * 24 22 21 37 37 H 1.07996 * 119.99230 * 180.02562 * 25 24 22 38 38 H 1.07996 * 125.80538 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8880 2.3965 1.2126 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3578 -8.8611 -0.0026 17 1 -1.9353 -8.4788 0.8391 18 8 -2.0288 -8.5441 -1.2238 19 6 -1.2194 -10.3566 0.1210 20 6 -0.9110 -11.1163 -0.9920 21 6 -0.7783 -12.4873 -0.8782 22 6 -0.9654 -13.1007 0.3478 23 17 -0.8054 -14.8234 0.4904 24 6 -1.2795 -12.3404 1.4603 25 6 -1.4059 -10.9688 1.3464 26 6 -0.3512 -3.8199 0.0002 27 7 -0.0715 -2.5410 0.0003 28 1 -0.4850 0.8401 -0.0004 29 1 2.9301 -3.8707 -0.0031 30 1 1.8708 -6.3426 -0.0012 31 1 0.5769 -8.5321 -0.8916 32 1 0.5756 -8.5325 0.8884 33 1 -1.5703 -8.8547 -2.0165 34 1 -0.7698 -10.6379 -1.9499 35 1 -0.5331 -13.0802 -1.7468 36 1 -1.4260 -12.8187 2.4175 37 1 -1.6507 -10.3753 2.2148 38 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772627956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:05 Heat of formation + Delta-G solvation = 16.096107 kcal Electronic energy + Delta-G solvation = -24678.414251 eV Core-core repulsion = 20741.701472 eV Total energy + Delta-G solvation = -3936.712779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.33310 -39.73756 -38.63736 -37.21677 -36.41490 -34.14550 -33.14214 -32.24594 -31.43884 -30.36815 -29.81578 -27.61242 -25.18299 -24.27530 -23.25486 -21.60080 -20.93041 -20.21228 -19.37777 -18.15516 -17.45163 -16.81662 -16.45140 -15.87938 -15.66987 -15.41125 -15.17121 -15.02735 -14.30306 -14.04297 -13.92347 -13.85172 -13.80955 -13.23232 -13.11976 -12.85463 -12.63034 -12.07639 -11.89087 -11.81382 -11.66875 -11.40110 -11.27432 -11.25954 -11.12999 -10.91859 -10.50769 -10.33009 -10.11866 -9.46364 -9.19415 -9.15090 -8.93375 -8.77409 -8.03792 -6.67574 -6.54394 -4.21320 0.68282 0.87095 1.73399 2.85465 3.05043 3.05367 3.11423 3.15137 3.57702 3.69564 3.87272 4.28455 4.35214 4.36529 4.45040 4.46329 4.66929 4.81602 4.88230 4.96921 5.02920 5.05949 5.24866 5.34459 5.47133 5.47424 5.68187 5.78658 5.80495 6.16426 6.25512 6.35205 6.48361 6.92486 6.98460 7.15479 7.26968 7.53157 7.87898 8.20984 8.31486 8.66166 8.90377 9.39915 9.69496 10.41723 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.046318 B = 0.001774 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.371742 B =15781.322232 C =15992.503190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.059 4.059 12 N -0.628 5.628 13 C 0.497 3.503 14 O -0.520 6.520 15 C -0.166 4.166 16 C 0.166 3.834 17 H 0.118 0.882 18 O -0.533 6.533 19 C -0.108 4.108 20 C -0.099 4.099 21 C -0.107 4.107 22 C -0.037 4.037 23 Cl -0.074 7.074 24 C -0.108 4.108 25 C -0.095 4.095 26 C -0.033 4.033 27 N -0.261 5.261 28 H 0.274 0.726 29 H 0.144 0.856 30 H 0.395 0.605 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.366 0.634 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -24.316 0.195 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.165 4.165 12 N -0.271 5.271 13 C 0.282 3.718 14 O -0.396 6.396 15 C -0.207 4.207 16 C 0.106 3.894 17 H 0.136 0.864 18 O -0.337 6.337 19 C -0.108 4.108 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.063 4.063 23 Cl -0.045 7.045 24 C -0.127 4.127 25 C -0.113 4.113 26 C -0.209 4.209 27 N -0.092 5.092 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.213 0.787 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.287 -22.485 0.619 22.496 hybrid contribution 1.884 -0.925 -0.324 2.124 sum 2.171 -23.410 0.295 23.512 Atomic orbital electron populations 1.70228 1.06113 1.27836 1.35499 1.25640 0.95702 1.00252 0.95541 0.85774 0.79611 0.80336 0.78470 1.18720 1.19922 1.19929 1.19904 0.91645 0.80573 1.53457 0.86630 1.44551 1.04048 1.03290 1.39284 1.21256 0.96793 0.85447 1.20123 1.17281 0.94242 0.81399 1.23541 1.42540 1.08162 1.04532 1.71873 1.20120 0.84670 0.88162 0.78817 1.90651 1.25535 1.74643 1.48724 1.22380 0.99403 0.93933 1.04976 1.20542 0.92156 0.86901 0.89819 0.86415 1.86826 1.50868 1.81430 1.14575 1.20821 0.98756 0.97306 0.93940 1.20886 0.99134 0.93008 0.98738 1.21024 1.00415 0.94858 0.96301 1.20973 1.04898 0.84788 0.95680 1.98377 1.96297 1.11528 1.98290 1.21078 0.99932 0.93739 0.97921 1.21041 0.98870 0.93817 0.97604 1.24126 0.98078 0.90709 1.07960 1.78253 0.90115 1.15154 1.25662 0.91531 0.83820 0.77233 0.88845 0.88212 0.78705 0.85035 0.84816 0.84765 0.84577 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.68 11.81 55.49 0.66 -21.03 16 2 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 3 Si 0.93 18.98 29.55 -169.99 -5.02 13.96 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.32 -8.60 10.25 -14.81 -0.15 -8.75 16 8 H 0.12 2.74 7.83 -52.48 -0.41 2.33 16 9 N -0.14 -3.97 3.74 -11.41 -0.04 -4.01 16 10 C -0.09 -2.00 11.49 -16.39 -0.19 -2.19 16 11 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 12 N -0.63 -10.66 5.47 -10.00 -0.05 -10.71 16 13 C 0.50 8.05 7.68 -10.99 -0.08 7.97 16 14 O -0.52 -10.81 12.57 -8.87 -0.11 -10.92 16 15 C -0.17 -1.67 5.36 -27.88 -0.15 -1.82 16 16 C 0.17 1.75 2.75 -27.88 -0.08 1.67 16 17 H 0.12 1.42 7.82 -51.93 -0.41 1.01 16 18 O -0.53 -6.59 12.42 -49.64 -0.62 -7.21 16 19 C -0.11 -0.91 4.97 -104.62 -0.52 -1.43 16 20 C -0.10 -0.73 9.32 -39.59 -0.37 -1.10 16 21 C -0.11 -0.79 9.83 -39.55 -0.39 -1.18 16 22 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 23 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.07 16 24 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 25 C -0.10 -0.75 9.67 -39.59 -0.38 -1.14 16 26 C -0.03 -0.88 10.85 -17.03 -0.18 -1.06 16 27 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.14 2.80 8.06 -52.49 -0.42 2.38 16 30 H 0.40 5.04 8.83 -40.82 -0.36 4.68 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.37 3.03 7.50 45.56 0.34 3.37 16 34 H 0.13 0.69 6.77 -52.49 -0.36 0.33 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.14 0.89 8.04 -52.49 -0.42 0.47 16 38 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -35.50 348.43 -8.11 -43.61 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.17 Total: 12.09 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -3.81 Total: -11.64 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.88 Total: -43.07 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.73 Total: -18.12 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.50 -8.11 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772627956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.702 kcal (2) G-P(sol) polarization free energy of solvation -35.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds