Wall clock time and date at job start Tue Mar 31 2020 19:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31291 * 1 3 3 Si 1.86804 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47064 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47363 * 299.99681 * 3 2 1 6 6 H 1.48505 * 109.47009 * 60.00073 * 3 2 1 7 7 C 1.38984 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99725 * 0.02562 * 7 2 1 10 10 C 1.36495 * 126.06816 * 179.97438 * 9 7 2 11 11 C 1.35678 * 107.51092 * 180.02562 * 10 9 7 12 12 N 1.40588 * 126.08563 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00370 * 180.02562 * 12 11 10 14 14 O 1.21306 * 120.00047 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00322 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47264 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.46783 * 305.00051 * 16 15 13 18 18 O 1.42897 * 109.47039 * 64.99516 * 16 15 13 19 19 C 1.50700 * 109.47215 * 184.99606 * 16 15 13 20 20 C 1.38236 * 119.99039 * 279.72930 * 19 16 15 21 21 C 1.38211 * 120.01679 * 179.72357 * 20 19 16 22 22 C 1.38356 * 119.98281 * 0.54585 * 21 20 19 23 23 Cl 1.73603 * 120.01394 * 179.74474 * 22 21 20 24 24 C 1.38354 * 119.97235 * 359.72662 * 22 21 20 25 25 C 1.38211 * 119.98874 * 359.97438 * 24 22 21 26 26 C 1.40653 * 107.83340 * 359.97438 * 11 10 9 27 27 N 1.30910 * 108.38789 * 0.02562 * 26 11 10 28 28 H 0.97003 * 119.99973 * 0.02562 * 1 2 3 29 29 H 1.07999 * 126.24260 * 359.75876 * 10 9 7 30 30 H 0.97001 * 119.99793 * 359.97438 * 12 11 10 31 31 H 1.09000 * 109.46804 * 299.99604 * 15 13 12 32 32 H 1.09003 * 109.47026 * 59.99515 * 15 13 12 33 33 H 0.96705 * 113.99721 * 60.00294 * 18 16 15 34 34 H 1.08001 * 119.99097 * 359.97438 * 20 19 16 35 35 H 1.07990 * 120.00965 * 180.26900 * 21 20 19 36 36 H 1.08003 * 120.00237 * 179.97438 * 24 22 21 37 37 H 1.07996 * 119.99230 * 180.02562 * 25 24 22 38 38 H 1.07996 * 125.80538 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8880 2.3965 1.2126 7 6 2.0079 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0005 11 6 0.8579 -4.5385 0.0000 12 7 0.9891 -5.9382 -0.0007 13 6 -0.1100 -6.7182 -0.0018 14 8 -1.2126 -6.2125 -0.0017 15 6 0.0308 -8.2186 -0.0020 16 6 -1.3578 -8.8611 -0.0026 17 1 -1.9353 -8.4788 0.8391 18 8 -2.0288 -8.5441 -1.2238 19 6 -1.2194 -10.3566 0.1210 20 6 -0.9110 -11.1163 -0.9920 21 6 -0.7783 -12.4873 -0.8782 22 6 -0.9654 -13.1007 0.3478 23 17 -0.8054 -14.8234 0.4904 24 6 -1.2795 -12.3404 1.4603 25 6 -1.4059 -10.9688 1.3464 26 6 -0.3512 -3.8199 0.0002 27 7 -0.0715 -2.5410 0.0003 28 1 -0.4850 0.8401 -0.0004 29 1 2.9301 -3.8707 -0.0031 30 1 1.8708 -6.3426 -0.0012 31 1 0.5769 -8.5321 -0.8916 32 1 0.5756 -8.5325 0.8884 33 1 -1.5703 -8.8547 -2.0165 34 1 -0.7698 -10.6379 -1.9499 35 1 -0.5331 -13.0802 -1.7468 36 1 -1.4260 -12.8187 2.4175 37 1 -1.6507 -10.3753 2.2148 38 1 -1.3418 -4.2500 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772627956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:04 Heat of formation + Delta-G solvation = -8.668023 kcal Electronic energy + Delta-G solvation = -24679.488104 eV Core-core repulsion = 20741.701472 eV Total energy + Delta-G solvation = -3937.786632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69798 -40.90703 -39.95899 -38.02647 -37.12670 -35.82930 -34.90617 -33.07101 -32.22498 -31.99575 -30.87641 -29.29035 -26.85499 -25.38173 -23.81844 -22.88302 -22.32348 -21.56853 -21.12295 -19.34751 -18.78637 -17.80865 -17.38910 -17.26312 -16.98898 -16.83062 -16.17704 -15.95739 -15.63996 -15.31757 -15.01441 -14.78761 -14.71864 -14.66977 -14.38752 -14.27688 -13.47527 -13.31301 -13.24735 -12.97125 -12.83008 -12.79601 -12.58060 -12.45077 -12.02450 -11.96554 -11.78078 -11.74272 -11.15682 -10.98672 -10.79998 -10.55513 -10.07668 -10.01148 -9.59137 -8.47579 -8.45533 -6.22295 0.08170 0.32305 1.15686 1.25120 1.40367 1.59207 1.59389 1.91885 2.07738 2.33724 2.58115 2.61771 2.95546 3.10569 3.56687 3.59193 3.77158 3.82486 3.96452 4.16452 4.32867 4.40582 4.44561 4.48875 4.65058 4.68718 4.70653 4.88929 5.01990 5.02662 5.14007 5.20545 5.25346 5.32573 5.53284 5.56593 5.79374 5.98657 6.36295 6.76946 6.85430 6.87611 7.47806 7.54782 7.72885 8.54242 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.046318 B = 0.001774 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.371742 B =15781.322232 C =15992.503190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.082 4.082 11 C -0.041 4.041 12 N -0.621 5.621 13 C 0.494 3.506 14 O -0.568 6.568 15 C -0.149 4.149 16 C 0.169 3.831 17 H 0.094 0.906 18 O -0.562 6.562 19 C -0.112 4.112 20 C -0.097 4.097 21 C -0.111 4.111 22 C -0.046 4.046 23 Cl -0.075 7.075 24 C -0.114 4.114 25 C -0.101 4.101 26 C -0.062 4.062 27 N -0.313 5.313 28 H 0.275 0.725 29 H 0.188 0.812 30 H 0.420 0.580 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.382 0.618 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -26.028 -0.132 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.060 4.940 10 C -0.232 4.232 11 C -0.148 4.148 12 N -0.267 5.267 13 C 0.283 3.717 14 O -0.447 6.447 15 C -0.189 4.189 16 C 0.110 3.890 17 H 0.112 0.888 18 O -0.369 6.369 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.130 4.130 22 C -0.073 4.073 23 Cl -0.046 7.046 24 C -0.132 4.132 25 C -0.119 4.119 26 C -0.237 4.237 27 N -0.145 5.145 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.257 0.743 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.232 0.768 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.076 -24.274 0.287 24.469 hybrid contribution 0.981 -0.609 -0.226 1.177 sum 4.057 -24.883 0.061 25.211 Atomic orbital electron populations 1.70414 1.08463 1.28944 1.37701 1.26890 0.96471 1.04386 0.94231 0.84538 0.79088 0.74424 0.78143 1.16229 1.19838 1.19855 1.20645 0.92935 0.80925 1.53990 0.84153 1.44841 1.03583 1.04863 1.40733 1.22022 0.98844 0.84226 1.18159 1.17367 0.92512 0.84258 1.20617 1.42549 1.10070 1.02053 1.72020 1.21292 0.83453 0.90582 0.76417 1.90645 1.27580 1.76120 1.50343 1.22376 1.00019 0.88373 1.08085 1.20401 0.91789 0.88262 0.88592 0.88820 1.86789 1.52149 1.82041 1.15881 1.20602 1.00067 0.95891 0.94684 1.21118 0.98221 0.92969 0.99237 1.21247 1.00041 0.95072 0.96610 1.21168 1.05041 0.84855 0.96199 1.98377 1.96299 1.11635 1.98312 1.21235 0.99828 0.93673 0.98510 1.21197 0.98728 0.94108 0.97915 1.24157 0.99099 0.90936 1.09507 1.78142 0.92126 1.16755 1.27455 0.91493 0.79521 0.74338 0.85262 0.85195 0.76833 0.82859 0.83279 0.83641 0.83784 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.44 11.81 21.66 0.26 -48.19 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 3 Si 1.02 38.86 29.55 68.60 2.03 40.88 16 4 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.35 -18.84 10.25 84.01 0.86 -17.98 16 8 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 9 N -0.17 -9.54 3.74 -190.01 -0.71 -10.25 16 10 C -0.08 -3.77 11.49 83.37 0.96 -2.81 16 11 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 12 N -0.62 -19.77 5.47 -303.93 -1.66 -21.43 16 13 C 0.49 15.32 7.68 87.66 0.67 15.99 16 14 O -0.57 -24.04 12.57 10.67 0.13 -23.90 16 15 C -0.15 -2.53 5.36 29.85 0.16 -2.37 16 16 C 0.17 3.30 2.75 29.85 0.08 3.39 16 17 H 0.09 2.26 7.82 -2.39 -0.02 2.24 16 18 O -0.56 -13.33 12.42 -135.20 -1.68 -15.01 16 19 C -0.11 -1.65 4.97 -19.86 -0.10 -1.75 16 20 C -0.10 -1.15 9.32 22.26 0.21 -0.94 16 21 C -0.11 -1.35 9.83 22.29 0.22 -1.13 16 22 C -0.05 -0.65 6.32 22.33 0.14 -0.51 16 23 Cl -0.08 -1.05 28.96 -2.72 -0.08 -1.12 16 24 C -0.11 -1.54 9.83 22.29 0.22 -1.32 16 25 C -0.10 -1.43 9.67 22.26 0.22 -1.21 16 26 C -0.06 -3.40 10.85 85.42 0.93 -2.47 16 27 N -0.31 -19.12 10.40 -56.46 -0.59 -19.70 16 28 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.19 6.65 8.06 -2.91 -0.02 6.62 16 30 H 0.42 9.14 8.83 -92.71 -0.82 8.32 16 31 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.38 5.57 7.50 -74.05 -0.56 5.02 16 34 H 0.15 1.05 6.77 -2.91 -0.02 1.03 16 35 H 0.15 1.30 8.06 -2.92 -0.02 1.27 16 36 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.14 1.70 8.04 -2.91 -0.02 1.68 16 38 H 0.17 9.23 5.92 -2.91 -0.02 9.21 16 Total: -1.00 -82.47 348.43 2.76 -79.71 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.23 Total: 33.70 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 5.29 Total: -14.70 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -2.70 Total: -99.57 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -1.54 Total: -38.91 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.12 kcal Total: -82.47 2.76 -79.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772627956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.045 kcal (2) G-P(sol) polarization free energy of solvation -82.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds