Wall clock time and date at job start Tue Mar 31 2020 19:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48495 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47181 * 300.00158 * 3 2 1 6 6 H 1.48502 * 109.46903 * 60.00053 * 3 2 1 7 7 C 1.38982 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00379 * 179.97438 * 7 2 1 9 9 N 1.37326 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.36488 * 126.07051 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.51081 * 180.02562 * 10 9 7 12 12 N 1.40591 * 126.08147 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99984 * 180.02562 * 12 11 10 14 14 O 1.21305 * 119.99542 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47137 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47411 * 55.00017 * 16 15 13 18 18 O 1.42906 * 109.47205 * 294.99818 * 16 15 13 19 19 C 1.50696 * 109.47396 * 174.99920 * 16 15 13 20 20 C 1.38247 * 119.98658 * 265.00270 * 19 16 15 21 21 C 1.38216 * 120.01497 * 179.97438 * 20 19 16 22 22 C 1.38357 * 119.98603 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01134 * 180.02562 * 22 21 20 24 24 C 1.38347 * 119.97107 * 0.28224 * 22 21 20 25 25 C 1.38219 * 119.98930 * 359.40143 * 24 22 21 26 26 C 1.40644 * 107.83348 * 0.26601 * 11 10 9 27 27 N 1.30916 * 108.38703 * 359.54654 * 26 11 10 28 28 H 0.97000 * 119.99925 * 359.97438 * 1 2 3 29 29 H 1.08005 * 126.24410 * 0.04574 * 10 9 7 30 30 H 0.96998 * 120.00720 * 0.02562 * 12 11 10 31 31 H 1.09001 * 109.47543 * 59.99723 * 15 13 12 32 32 H 1.09003 * 109.46922 * 299.99788 * 15 13 12 33 33 H 0.96695 * 113.99566 * 299.99644 * 18 16 15 34 34 H 1.08003 * 119.99321 * 359.97438 * 20 19 16 35 35 H 1.08002 * 120.00776 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00661 * 179.71600 * 24 22 21 37 37 H 1.07997 * 119.99445 * 180.32231 * 25 24 22 38 38 H 1.08000 * 125.80579 * 179.70587 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8881 2.3965 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6404 -0.0005 11 6 0.8579 -4.5384 -0.0011 12 7 0.9892 -5.9382 -0.0018 13 6 -0.1099 -6.7182 -0.0029 14 8 -1.2125 -6.2124 -0.0027 15 6 0.0308 -8.2186 -0.0030 16 6 -1.3577 -8.8611 -0.0050 17 1 -1.9340 -8.4785 -0.8474 18 8 -2.0307 -8.5447 1.2154 19 6 -1.2192 -10.3565 -0.1290 20 6 -1.3016 -10.9574 -1.3713 21 6 -1.1741 -12.3289 -1.4858 22 6 -0.9644 -13.1005 -0.3567 23 17 -0.8034 -14.8231 -0.4998 24 6 -0.8883 -12.4993 0.8870 25 6 -1.0095 -11.1270 0.9995 26 6 -0.3511 -3.8199 -0.0077 27 7 -0.0714 -2.5410 -0.0011 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8707 0.0002 30 1 1.8709 -6.3427 -0.0016 31 1 0.5757 -8.5326 0.8873 32 1 0.5770 -8.5321 -0.8927 33 1 -1.5735 -8.8557 2.0086 34 1 -1.4657 -10.3550 -2.2526 35 1 -1.2381 -12.7981 -2.4564 36 1 -0.7293 -13.1015 1.7693 37 1 -0.9449 -10.6570 1.9697 38 1 -1.3418 -4.2500 -0.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772627962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:08 Heat of formation + Delta-G solvation = 16.293428 kcal Electronic energy + Delta-G solvation = -24679.382329 eV Core-core repulsion = 20742.678106 eV Total energy + Delta-G solvation = -3936.704222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33503 -39.73824 -38.63757 -37.21967 -36.41509 -34.14578 -33.14212 -32.26131 -31.41750 -30.36922 -29.81880 -27.61388 -25.18499 -24.27070 -23.24764 -21.59677 -20.93264 -20.21874 -19.37826 -18.17126 -17.45496 -16.80701 -16.45212 -15.88034 -15.67136 -15.41209 -15.17441 -15.02977 -14.30418 -14.03923 -13.92677 -13.86127 -13.80031 -13.23106 -13.11684 -12.85459 -12.61605 -12.07042 -11.89129 -11.82047 -11.66892 -11.40132 -11.27367 -11.26010 -11.13138 -10.91907 -10.50823 -10.34079 -10.11917 -9.46171 -9.19660 -9.15004 -8.92609 -8.77383 -8.03784 -6.67592 -6.54420 -4.21381 0.68577 0.87232 1.73613 2.85402 3.04987 3.05350 3.11424 3.15237 3.57792 3.69513 3.87271 4.27172 4.35577 4.36325 4.44880 4.46474 4.66840 4.82020 4.88935 4.96495 5.02916 5.06144 5.25033 5.34246 5.46846 5.47555 5.68291 5.78931 5.80686 6.16189 6.25463 6.35338 6.48338 6.92449 6.98421 7.15453 7.26929 7.52770 7.87891 8.20918 8.31438 8.66118 8.90304 9.39872 9.69460 10.41696 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.046321 B = 0.001774 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.331825 B =15778.998443 C =15994.456474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.059 4.059 12 N -0.628 5.628 13 C 0.497 3.503 14 O -0.520 6.520 15 C -0.166 4.166 16 C 0.166 3.834 17 H 0.119 0.881 18 O -0.533 6.533 19 C -0.107 4.107 20 C -0.096 4.096 21 C -0.108 4.108 22 C -0.037 4.037 23 Cl -0.074 7.074 24 C -0.107 4.107 25 C -0.099 4.099 26 C -0.033 4.033 27 N -0.261 5.261 28 H 0.274 0.726 29 H 0.144 0.856 30 H 0.395 0.605 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.366 0.634 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 -24.303 -0.222 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.088 4.912 10 C -0.236 4.236 11 C -0.165 4.165 12 N -0.271 5.271 13 C 0.282 3.718 14 O -0.395 6.395 15 C -0.207 4.207 16 C 0.106 3.894 17 H 0.136 0.864 18 O -0.337 6.337 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.064 4.064 23 Cl -0.045 7.045 24 C -0.126 4.126 25 C -0.118 4.118 26 C -0.209 4.209 27 N -0.092 5.092 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.228 0.772 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.213 0.787 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.298 -22.472 -0.641 22.483 hybrid contribution 1.879 -0.925 0.321 2.119 sum 2.176 -23.396 -0.320 23.500 Atomic orbital electron populations 1.70230 1.06110 1.27836 1.35500 1.25641 0.95703 1.00253 0.95540 0.85772 0.79609 0.80332 0.78471 1.18720 1.19924 1.19928 1.19903 0.91645 0.80573 1.53455 0.86630 1.44550 1.04050 1.03291 1.39276 1.21257 0.96795 0.85447 1.20125 1.17281 0.94242 0.81396 1.23540 1.42542 1.08161 1.04532 1.71875 1.20121 0.84671 0.88161 0.78821 1.90651 1.25540 1.74633 1.48720 1.22376 0.99377 0.93928 1.04991 1.20540 0.92119 0.86939 0.89827 0.86363 1.86826 1.50836 1.81455 1.14609 1.20827 0.98887 0.97303 0.93785 1.21029 0.98961 0.93906 0.97543 1.21076 1.00088 0.93637 0.97844 1.20970 1.05252 0.84779 0.95379 1.98377 1.96229 1.11553 1.98340 1.21026 1.00425 0.94935 0.96186 1.20886 0.99241 0.92895 0.98743 1.24126 0.98078 0.90710 1.07959 1.78255 0.90113 1.15152 1.25666 0.91532 0.83819 0.77233 0.88829 0.88215 0.78697 0.84583 0.84767 0.84820 0.85009 0.80696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.68 11.81 55.49 0.66 -21.02 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 18.98 29.55 -169.99 -5.02 13.96 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.32 -8.59 10.25 -14.81 -0.15 -8.75 16 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.96 3.74 -11.41 -0.04 -4.01 16 10 C -0.09 -2.00 11.49 -16.39 -0.19 -2.19 16 11 C -0.06 -1.35 6.90 -83.84 -0.58 -1.93 16 12 N -0.63 -10.65 5.47 -10.00 -0.05 -10.71 16 13 C 0.50 8.05 7.68 -10.99 -0.08 7.96 16 14 O -0.52 -10.80 12.57 -8.91 -0.11 -10.91 16 15 C -0.17 -1.67 5.36 -27.89 -0.15 -1.82 16 16 C 0.17 1.74 2.76 -27.89 -0.08 1.67 16 17 H 0.12 1.42 7.87 -51.93 -0.41 1.02 16 18 O -0.53 -6.57 12.37 -49.68 -0.61 -7.19 16 19 C -0.11 -0.91 5.01 -104.62 -0.52 -1.43 16 20 C -0.10 -0.76 9.68 -39.59 -0.38 -1.14 16 21 C -0.11 -0.82 9.83 -39.55 -0.39 -1.21 16 22 C -0.04 -0.30 6.32 -39.50 -0.25 -0.55 16 23 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.08 16 24 C -0.11 -0.80 9.83 -39.55 -0.39 -1.18 16 25 C -0.10 -0.74 9.33 -39.59 -0.37 -1.11 16 26 C -0.03 -0.88 10.85 -17.03 -0.18 -1.06 16 27 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.14 2.80 8.06 -52.48 -0.42 2.38 16 30 H 0.40 5.04 8.83 -40.82 -0.36 4.68 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.37 3.02 7.39 45.56 0.34 3.35 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.70 6.61 -52.49 -0.35 0.36 16 38 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -35.49 348.23 -8.11 -43.60 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -3.17 Total: 12.09 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -3.81 Total: -11.66 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.88 Total: -43.06 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.73 Total: -18.10 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.49 -8.11 -43.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772627962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.891 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds