Wall clock time and date at job start Tue Mar 31 2020 19:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48495 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47181 * 300.00158 * 3 2 1 6 6 H 1.48502 * 109.46903 * 60.00053 * 3 2 1 7 7 C 1.38982 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00379 * 179.97438 * 7 2 1 9 9 N 1.37326 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.36488 * 126.07051 * 180.02562 * 9 7 2 11 11 C 1.35681 * 107.51081 * 180.02562 * 10 9 7 12 12 N 1.40591 * 126.08147 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99984 * 180.02562 * 12 11 10 14 14 O 1.21305 * 119.99542 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47137 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47411 * 55.00017 * 16 15 13 18 18 O 1.42906 * 109.47205 * 294.99818 * 16 15 13 19 19 C 1.50696 * 109.47396 * 174.99920 * 16 15 13 20 20 C 1.38247 * 119.98658 * 265.00270 * 19 16 15 21 21 C 1.38216 * 120.01497 * 179.97438 * 20 19 16 22 22 C 1.38357 * 119.98603 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01134 * 180.02562 * 22 21 20 24 24 C 1.38347 * 119.97107 * 0.28224 * 22 21 20 25 25 C 1.38219 * 119.98930 * 359.40143 * 24 22 21 26 26 C 1.40644 * 107.83348 * 0.26601 * 11 10 9 27 27 N 1.30916 * 108.38703 * 359.54654 * 26 11 10 28 28 H 0.97000 * 119.99925 * 359.97438 * 1 2 3 29 29 H 1.08005 * 126.24410 * 0.04574 * 10 9 7 30 30 H 0.96998 * 120.00720 * 0.02562 * 12 11 10 31 31 H 1.09001 * 109.47543 * 59.99723 * 15 13 12 32 32 H 1.09003 * 109.46922 * 299.99788 * 15 13 12 33 33 H 0.96695 * 113.99566 * 299.99644 * 18 16 15 34 34 H 1.08003 * 119.99321 * 359.97438 * 20 19 16 35 35 H 1.08002 * 120.00776 * 180.02562 * 21 20 19 36 36 H 1.08000 * 120.00661 * 179.71600 * 24 22 21 37 37 H 1.07997 * 119.99445 * 180.32231 * 25 24 22 38 38 H 1.08000 * 125.80579 * 179.70587 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8881 2.3965 -1.2125 6 1 1.8881 2.3965 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6404 -0.0005 11 6 0.8579 -4.5384 -0.0011 12 7 0.9892 -5.9382 -0.0018 13 6 -0.1099 -6.7182 -0.0029 14 8 -1.2125 -6.2124 -0.0027 15 6 0.0308 -8.2186 -0.0030 16 6 -1.3577 -8.8611 -0.0050 17 1 -1.9340 -8.4785 -0.8474 18 8 -2.0307 -8.5447 1.2154 19 6 -1.2192 -10.3565 -0.1290 20 6 -1.3016 -10.9574 -1.3713 21 6 -1.1741 -12.3289 -1.4858 22 6 -0.9644 -13.1005 -0.3567 23 17 -0.8034 -14.8231 -0.4998 24 6 -0.8883 -12.4993 0.8870 25 6 -1.0095 -11.1270 0.9995 26 6 -0.3511 -3.8199 -0.0077 27 7 -0.0714 -2.5410 -0.0011 28 1 -0.4850 0.8401 0.0004 29 1 2.9302 -3.8707 0.0002 30 1 1.8709 -6.3427 -0.0016 31 1 0.5757 -8.5326 0.8873 32 1 0.5770 -8.5321 -0.8927 33 1 -1.5735 -8.8557 2.0086 34 1 -1.4657 -10.3550 -2.2526 35 1 -1.2381 -12.7981 -2.4564 36 1 -0.7293 -13.1015 1.7693 37 1 -0.9449 -10.6570 1.9697 38 1 -1.3418 -4.2500 -0.0142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772627962.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:07 Heat of formation + Delta-G solvation = -8.428126 kcal Electronic energy + Delta-G solvation = -24680.454336 eV Core-core repulsion = 20742.678106 eV Total energy + Delta-G solvation = -3937.776229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69861 -40.90944 -39.95903 -38.02953 -37.12556 -35.82913 -34.90552 -33.08404 -32.22475 -31.97792 -30.87936 -29.29202 -26.85676 -25.38099 -23.80777 -22.88234 -22.31923 -21.57715 -21.12386 -19.34971 -18.80174 -17.80979 -17.38762 -17.26275 -16.98716 -16.82607 -16.17999 -15.95700 -15.64451 -15.32245 -15.01104 -14.79571 -14.72779 -14.65700 -14.38137 -14.27686 -13.47511 -13.29920 -13.24102 -12.97490 -12.83035 -12.79901 -12.57485 -12.45774 -12.02478 -11.96592 -11.78084 -11.74218 -11.16651 -10.98677 -10.79994 -10.55645 -10.07626 -10.01067 -9.58396 -8.47572 -8.45535 -6.22333 0.08376 0.32345 1.15816 1.25109 1.40367 1.59185 1.59406 1.91857 2.07736 2.33672 2.58101 2.61928 2.95580 3.10553 3.55664 3.58755 3.77935 3.81946 3.96566 4.16742 4.32950 4.41002 4.44306 4.48574 4.65064 4.68617 4.70706 4.88899 5.02022 5.02681 5.13983 5.20700 5.25470 5.32578 5.53191 5.56530 5.79418 5.98674 6.36293 6.76939 6.85289 6.87344 7.47776 7.54750 7.72876 8.54236 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.046321 B = 0.001774 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.331825 B =15778.998443 C =15994.456474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.009 4.009 3 Si 1.019 2.981 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.082 4.082 11 C -0.041 4.041 12 N -0.621 5.621 13 C 0.494 3.506 14 O -0.568 6.568 15 C -0.149 4.149 16 C 0.169 3.831 17 H 0.095 0.905 18 O -0.562 6.562 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.113 4.113 22 C -0.046 4.046 23 Cl -0.075 7.075 24 C -0.111 4.111 25 C -0.098 4.098 26 C -0.062 4.062 27 N -0.313 5.313 28 H 0.275 0.725 29 H 0.188 0.812 30 H 0.419 0.581 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.382 0.618 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -26.012 0.055 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.060 4.940 10 C -0.233 4.233 11 C -0.147 4.147 12 N -0.267 5.267 13 C 0.283 3.717 14 O -0.447 6.447 15 C -0.188 4.188 16 C 0.110 3.890 17 H 0.112 0.888 18 O -0.369 6.369 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.073 4.073 23 Cl -0.046 7.046 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.237 4.237 27 N -0.145 5.145 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.257 0.743 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.232 0.768 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.055 -24.258 -0.358 24.452 hybrid contribution 0.986 -0.610 0.240 1.184 sum 4.041 -24.868 -0.119 25.195 Atomic orbital electron populations 1.70416 1.08460 1.28943 1.37705 1.26890 0.96472 1.04386 0.94231 0.84537 0.79086 0.74423 0.78143 1.16230 1.19842 1.19852 1.20644 0.92935 0.80925 1.53988 0.84155 1.44839 1.03586 1.04864 1.40728 1.22023 0.98845 0.84227 1.18160 1.17366 0.92514 0.84254 1.20616 1.42551 1.10069 1.02053 1.72024 1.21291 0.83454 0.90577 0.76420 1.90646 1.27581 1.76110 1.50337 1.22371 1.00000 0.88375 1.08089 1.20399 0.91749 0.88290 0.88611 0.88752 1.86788 1.52108 1.82063 1.15909 1.20608 1.00205 0.95892 0.94516 1.21189 0.98732 0.94189 0.97846 1.21239 0.99938 0.93578 0.98442 1.21163 1.05384 0.84848 0.95902 1.98377 1.96231 1.11660 1.98361 1.21243 1.00049 0.95147 0.96539 1.21111 0.98364 0.92865 0.99285 1.24158 0.99099 0.90935 1.09504 1.78144 0.92124 1.16754 1.27459 0.91495 0.79523 0.74341 0.85319 0.85151 0.76830 0.83679 0.83602 0.83329 0.82967 0.81783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.44 11.81 21.66 0.26 -48.18 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.01 16 3 Si 1.02 38.86 29.55 68.60 2.03 40.88 16 4 H -0.24 -8.11 7.11 99.48 0.71 -7.41 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 7 C -0.35 -18.84 10.25 84.01 0.86 -17.97 16 8 H 0.14 6.45 7.83 -2.91 -0.02 6.42 16 9 N -0.17 -9.53 3.74 -190.02 -0.71 -10.24 16 10 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 11 C -0.04 -1.87 6.90 37.73 0.26 -1.60 16 12 N -0.62 -19.76 5.47 -303.93 -1.66 -21.43 16 13 C 0.49 15.31 7.68 87.66 0.67 15.99 16 14 O -0.57 -24.01 12.57 10.70 0.13 -23.88 16 15 C -0.15 -2.53 5.36 29.85 0.16 -2.37 16 16 C 0.17 3.30 2.76 29.85 0.08 3.38 16 17 H 0.09 2.28 7.87 -2.39 -0.02 2.26 16 18 O -0.56 -13.29 12.37 -135.17 -1.67 -14.97 16 19 C -0.11 -1.65 5.01 -19.86 -0.10 -1.75 16 20 C -0.10 -1.40 9.68 22.27 0.22 -1.19 16 21 C -0.11 -1.52 9.83 22.29 0.22 -1.30 16 22 C -0.05 -0.65 6.32 22.32 0.14 -0.51 16 23 Cl -0.08 -1.05 28.96 -2.72 -0.08 -1.13 16 24 C -0.11 -1.37 9.83 22.29 0.22 -1.15 16 25 C -0.10 -1.18 9.33 22.27 0.21 -0.98 16 26 C -0.06 -3.39 10.85 85.42 0.93 -2.47 16 27 N -0.31 -19.12 10.40 -56.46 -0.59 -19.70 16 28 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.19 6.65 8.06 -2.91 -0.02 6.62 16 30 H 0.42 9.14 8.83 -92.71 -0.82 8.32 16 31 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.38 5.56 7.39 -74.06 -0.55 5.01 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.15 1.12 6.61 -2.91 -0.02 1.10 16 38 H 0.17 9.23 5.92 -2.91 -0.02 9.21 16 Total: -1.00 -82.39 348.23 2.78 -79.62 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.23 Total: 33.75 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 5.29 Total: -14.72 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -2.70 Total: -99.56 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.54 Total: -38.85 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -82.39 2.78 -79.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772627962.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.187 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds