Wall clock time and date at job start Tue Mar 31 2020 19:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00344 * 2 1 4 4 H 1.48500 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46906 * 299.99982 * 3 2 1 6 6 H 1.48495 * 109.47152 * 60.00324 * 3 2 1 7 7 C 1.37884 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00221 * 165.05377 * 7 2 1 9 9 C 1.50700 * 119.99709 * 345.05553 * 7 2 1 10 10 C 1.53002 * 115.55047 * 324.82431 * 9 7 2 11 11 O 1.45205 * 109.46674 * 306.32533 * 10 9 7 12 12 C 1.34751 * 116.99697 * 183.72072 * 11 10 9 13 13 O 1.21502 * 120.00086 * 4.88431 * 12 11 10 14 14 C 1.47473 * 119.99972 * 184.89149 * 12 11 10 15 15 C 1.39818 * 120.09091 * 174.83272 * 14 12 11 16 16 C 1.38065 * 119.90195 * 180.02562 * 15 14 12 17 17 C 1.39604 * 119.98624 * 0.02562 * 16 15 14 18 18 C 1.38831 * 120.06361 * 359.97438 * 17 16 15 19 19 N 1.48014 * 119.88846 * 179.97438 * 18 17 16 20 20 O 1.21804 * 120.00069 * 180.02562 * 19 18 17 21 21 O 1.21802 * 119.99914 * 359.72564 * 19 18 17 22 22 C 1.37786 * 120.22508 * 0.27467 * 18 17 16 23 23 O 1.36345 * 108.57546 * 179.97438 * 17 16 15 24 24 C 1.43956 * 105.54340 * 342.65459 * 23 17 16 25 25 O 1.36533 * 131.42605 * 179.97438 * 16 15 14 26 26 C 1.52996 * 117.50033 * 110.49019 * 9 7 2 27 27 C 1.52996 * 117.49970 * 179.15157 * 9 7 2 28 28 H 0.97003 * 119.99508 * 5.03453 * 1 2 3 29 29 H 1.09000 * 109.47174 * 186.32926 * 10 9 7 30 30 H 1.08994 * 109.47363 * 66.32116 * 10 9 7 31 31 H 1.08004 * 120.04472 * 359.97438 * 15 14 12 32 32 H 1.08003 * 119.99581 * 179.70057 * 22 18 17 33 33 H 1.09003 * 110.56512 * 268.66354 * 24 23 17 34 34 H 1.09002 * 110.68966 * 145.87622 * 24 23 17 35 35 H 1.09000 * 117.50296 * 214.99821 * 26 9 7 36 36 H 1.08999 * 117.49711 * 0.02619 * 26 9 7 37 37 H 1.09003 * 117.49648 * 359.97438 * 27 9 7 38 38 H 1.08994 * 117.50242 * 144.97107 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0571 -1.2099 -0.2418 9 6 1.2892 -2.4772 0.3355 10 6 0.1929 -2.3632 1.3967 11 8 0.7374 -1.7402 2.5899 12 6 -0.0829 -1.6349 3.6537 13 8 -1.1916 -2.1306 3.6173 14 6 0.3648 -0.9178 4.8620 15 6 -0.5208 -0.7135 5.9245 16 6 -0.0976 -0.0412 7.0537 17 6 1.2127 0.4339 7.1329 18 6 2.0912 0.2305 6.0773 19 7 3.4795 0.7364 6.1652 20 8 4.2518 0.5595 5.2401 21 8 3.8479 1.3343 7.1603 22 6 1.6734 -0.4352 4.9456 23 8 1.3776 1.0551 8.3354 24 6 0.0475 1.3163 8.8202 25 8 -0.7493 0.2850 8.2083 26 6 1.0743 -3.4837 -0.7967 27 6 2.1046 -3.7713 0.2983 28 1 -0.4849 0.8369 -0.0737 29 1 -0.1787 -3.3578 1.6435 30 1 -0.6250 -1.7552 1.0104 31 1 -1.5346 -1.0804 5.8616 32 1 2.3585 -0.5871 4.1247 33 1 -0.2901 2.3019 8.4997 34 1 0.0107 1.2347 9.9066 35 1 0.1522 -4.0646 -0.7855 36 1 1.4508 -3.2179 -1.7845 37 1 3.1584 -3.6946 0.0304 38 1 1.8605 -4.5412 1.0301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779213859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:48 Heat of formation + Delta-G solvation = -80.052539 kcal Electronic energy + Delta-G solvation = -28987.091720 eV Core-core repulsion = 24573.207707 eV Total energy + Delta-G solvation = -4413.884013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.07043 -41.98210 -40.09805 -38.17727 -37.04940 -36.81719 -36.49023 -35.32809 -32.24358 -32.11930 -31.08295 -27.20725 -26.69308 -26.35414 -25.47784 -24.40119 -23.08318 -21.43931 -21.17536 -19.48671 -19.30443 -18.98819 -18.58735 -18.09604 -17.56047 -17.41497 -16.99213 -16.66230 -16.12738 -15.83534 -15.50579 -14.96175 -14.67927 -14.60416 -13.92204 -13.75281 -13.63655 -13.51402 -13.13843 -12.60003 -12.30305 -12.20308 -11.72835 -11.55719 -11.53380 -11.22907 -11.10285 -11.02941 -10.91646 -10.55531 -10.44063 -10.34814 -9.92661 -9.74659 -9.58623 -9.23321 -8.86829 -8.83014 -8.19448 -6.16509 -4.16222 -0.45172 0.11058 1.04976 1.18033 1.87456 2.29798 2.55833 3.11158 3.22068 3.25873 3.32738 3.39488 3.57989 3.98221 4.13794 4.27928 4.31394 4.45418 4.51997 4.74416 4.86215 4.92612 5.07504 5.33420 5.44431 5.55938 5.66309 5.90270 6.07792 6.11668 6.31902 6.34696 6.47330 6.57732 6.64861 6.86986 7.14162 7.22708 7.25347 7.60334 7.81269 8.15993 8.28980 8.78508 9.43172 10.86812 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.004142 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.260702 B = 6759.045103 C = 7685.828650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.483 4.483 8 H 0.066 0.934 9 C 0.046 3.954 10 C 0.116 3.884 11 O -0.315 6.315 12 C 0.508 3.492 13 O -0.508 6.508 14 C -0.098 4.098 15 C 0.005 3.995 16 C 0.022 3.978 17 C 0.126 3.874 18 C -0.041 4.041 19 N 0.031 4.969 20 O -0.142 6.142 21 O -0.149 6.149 22 C 0.011 3.989 23 O -0.275 6.275 24 C 0.207 3.793 25 O -0.292 6.292 26 C -0.190 4.190 27 C -0.208 4.208 28 H 0.263 0.737 29 H 0.035 0.965 30 H 0.114 0.886 31 H 0.170 0.830 32 H 0.190 0.810 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 1.228 15.623 15.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.520 4.520 8 H 0.084 0.916 9 C 0.045 3.955 10 C 0.044 3.956 11 O -0.228 6.228 12 C 0.351 3.649 13 O -0.400 6.400 14 C -0.100 4.100 15 C -0.014 4.014 16 C -0.023 4.023 17 C 0.077 3.923 18 C -0.125 4.125 19 N 0.552 4.448 20 O -0.359 6.359 21 O -0.366 6.366 22 C -0.008 4.008 23 O -0.189 6.189 24 C 0.096 3.904 25 O -0.208 6.208 26 C -0.228 4.228 27 C -0.245 4.245 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.132 0.868 31 H 0.188 0.812 32 H 0.208 0.792 33 H 0.114 0.886 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.213 0.946 15.842 16.192 hybrid contribution 0.564 1.100 0.155 1.246 sum -2.649 2.046 15.997 16.343 Atomic orbital electron populations 1.69827 1.06162 1.26996 1.49060 1.24904 0.94674 0.99154 0.93886 0.86578 0.80858 0.83326 0.77670 1.19108 1.21063 1.20823 1.20462 0.95587 0.89026 1.46908 0.91612 1.18874 0.94450 0.89568 0.92570 1.22955 0.98688 0.94613 0.79381 1.86555 1.42427 1.72224 1.21636 1.20266 0.83372 0.77702 0.83556 1.90817 1.21031 1.45256 1.82876 1.18852 0.92827 1.03655 0.94670 1.20437 1.01601 0.92769 0.86581 1.19173 0.89202 1.04126 0.89798 1.19505 0.92926 0.94206 0.85648 1.20035 0.83716 1.12502 0.96227 1.43285 1.02122 0.99022 1.00392 1.94627 1.49437 1.61337 1.30536 1.94572 1.80979 1.39432 1.21597 1.21402 0.96479 0.87973 0.94987 1.87586 1.29474 1.73415 1.28376 1.25953 0.72165 0.91934 1.00342 1.87482 1.47379 1.55083 1.30894 1.22975 0.98748 1.05829 0.95240 1.22985 0.96859 1.02155 1.02550 0.92709 0.94679 0.86837 0.81227 0.79244 0.88564 0.83718 0.91444 0.89651 0.90114 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.31 10.96 55.43 0.61 -22.70 16 2 C 0.08 1.98 5.12 -17.82 -0.09 1.89 16 3 Si 0.89 20.41 29.57 -169.99 -5.03 15.38 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.48 -12.42 8.75 -34.44 -0.30 -12.72 16 8 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 9 C 0.05 1.07 2.10 -155.66 -0.33 0.75 16 10 C 0.12 2.63 4.66 37.16 0.17 2.80 16 11 O -0.31 -6.70 9.12 -40.63 -0.37 -7.07 16 12 C 0.51 9.46 7.88 34.49 0.27 9.73 16 13 O -0.51 -10.17 16.07 -19.27 -0.31 -10.48 16 14 C -0.10 -1.46 5.87 -104.99 -0.62 -2.07 16 15 C 0.00 0.06 9.60 -39.05 -0.37 -0.31 16 16 C 0.02 0.26 7.13 -39.14 -0.28 -0.02 16 17 C 0.13 1.61 6.76 -38.85 -0.26 1.34 16 18 C -0.04 -0.59 6.85 -79.89 -0.55 -1.14 16 19 N 0.03 0.50 4.45 33.99 0.15 0.65 16 20 O -0.14 -2.45 18.43 -29.46 -0.54 -2.99 16 21 O -0.15 -2.44 18.04 -34.59 -0.62 -3.06 16 22 C 0.01 0.16 9.11 -39.19 -0.36 -0.20 16 23 O -0.27 -3.09 10.50 -50.73 -0.53 -3.63 16 24 C 0.21 1.45 8.88 101.05 0.90 2.35 16 25 O -0.29 -2.86 11.41 -45.80 -0.52 -3.38 16 26 C -0.19 -4.02 9.96 -26.70 -0.27 -4.29 16 27 C -0.21 -4.25 9.92 -26.70 -0.26 -4.52 16 28 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 29 H 0.03 0.74 7.95 -51.93 -0.41 0.33 16 30 H 0.11 2.85 6.12 -51.93 -0.32 2.53 16 31 H 0.17 1.88 7.65 -52.48 -0.40 1.47 16 32 H 0.19 2.95 7.14 -52.48 -0.37 2.57 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.15 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -29.49 346.38 -7.89 -37.38 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -3.59 Total: 1.10 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.35 Total: -6.41 kcal Atomic # 7 Polarization: -22.81 SS G_CDS: 0.76 Total: -22.05 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -2.90 Total: -30.61 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.49 -7.89 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779213859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.674 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds