Wall clock time and date at job start Tue Mar 31 2020 18:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34763 * 124.17335 * 2 1 4 4 O 1.21230 * 127.16265 * 0.02562 * 3 2 1 5 5 C 1.51588 * 105.68274 * 179.97438 * 3 2 1 6 6 N 1.47315 * 103.59001 * 0.32451 * 5 3 2 7 7 N 1.40101 * 126.69117 * 179.84082 * 6 5 3 8 8 C 1.34773 * 120.00319 * 254.98491 * 7 6 5 9 9 O 1.21612 * 119.99821 * 359.97438 * 8 7 6 10 10 C 1.47424 * 120.00163 * 180.02562 * 8 7 6 11 11 C 1.39679 * 120.21616 * 359.97438 * 10 8 7 12 12 C 1.37804 * 119.93604 * 180.02562 * 11 10 8 13 13 C 1.38659 * 120.38654 * 0.02562 * 12 11 10 14 14 C 1.37916 * 120.43454 * 0.02562 * 13 12 11 15 15 C 1.39107 * 120.04999 * 359.67768 * 14 13 12 16 16 S 1.76201 * 120.18919 * 180.32264 * 15 14 13 17 17 C 1.76191 * 100.00076 * 6.84336 * 16 15 14 18 18 H 1.08001 * 120.00186 * 5.65012 * 17 16 15 19 19 C 1.38806 * 120.00097 * 185.65705 * 17 16 15 20 20 N 1.31555 * 120.00155 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99870 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47044 * 90.00397 * 21 19 17 23 23 H 1.48505 * 109.47040 * 210.00069 * 21 19 17 24 24 H 1.48500 * 109.47197 * 330.00098 * 21 19 17 25 25 C 1.33793 * 124.17637 * 180.30713 * 2 1 3 26 26 O 1.21533 * 123.77103 * 359.96190 * 25 2 1 27 27 H 1.09005 * 109.47178 * 269.69559 * 1 2 3 28 28 H 1.09004 * 109.47450 * 149.69621 * 1 2 3 29 29 H 1.08997 * 109.47613 * 29.69614 * 1 2 3 30 30 H 1.08999 * 110.77031 * 241.72028 * 5 3 2 31 31 H 1.08999 * 110.43642 * 118.76807 * 5 3 2 32 32 H 0.97007 * 119.99707 * 74.97548 * 7 6 5 33 33 H 1.07996 * 120.02729 * 359.97438 * 11 10 8 34 34 H 1.08007 * 119.80657 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.77993 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.97018 * 179.97438 * 14 13 12 37 37 H 0.97001 * 120.00212 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2219 1.1149 0.0000 4 8 1.8340 2.2635 0.0004 5 6 3.6596 0.6342 0.0007 6 7 3.5337 -0.8336 -0.0071 7 7 4.5815 -1.7636 -0.0127 8 6 4.8842 -2.4310 -1.1438 9 8 4.2474 -2.2264 -2.1595 10 6 5.9864 -3.4100 -1.1495 11 6 6.7204 -3.6490 0.0146 12 6 7.7499 -4.5650 0.0026 13 6 8.0634 -5.2525 -1.1600 14 6 7.3496 -5.0280 -2.3185 15 6 6.3028 -4.1119 -2.3253 16 16 5.3830 -3.8284 -3.8012 17 6 6.0681 -5.0807 -4.8340 18 1 6.7708 -5.7923 -4.4263 19 6 5.7048 -5.1526 -6.1717 20 7 6.2168 -6.0873 -6.9430 21 14 4.4890 -3.9222 -6.8768 22 1 5.2248 -2.7418 -7.3970 23 1 3.7271 -4.5570 -7.9822 24 1 3.5487 -3.4896 -5.8120 25 6 2.2165 -1.1069 -0.0059 26 8 1.7602 -2.2333 -0.0113 27 1 -0.3634 -0.0055 1.0277 28 1 -0.3634 -0.8873 -0.5185 29 1 -0.3634 0.8926 -0.5091 30 1 4.1789 0.9697 0.8983 31 1 4.1767 0.9794 -0.8946 32 1 5.0893 -1.9270 0.7975 33 1 6.4818 -3.1158 0.9229 34 1 8.3163 -4.7478 0.9038 35 1 8.8719 -5.9685 -1.1582 36 1 7.6005 -5.5674 -3.2199 37 1 5.9626 -6.1379 -7.8778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779541989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:54 Heat of formation + Delta-G solvation = 8.794764 kcal Electronic energy + Delta-G solvation = -25879.466881 eV Core-core repulsion = 21944.481198 eV Total energy + Delta-G solvation = -3934.985683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51466 -39.80253 -38.77344 -37.70764 -36.36740 -35.61596 -32.97651 -32.78272 -30.70294 -30.51475 -27.81562 -27.43164 -25.99730 -24.06831 -22.79304 -22.16674 -21.30771 -20.21613 -19.00070 -18.14751 -17.56568 -17.12480 -17.01640 -16.21497 -16.05084 -15.73039 -15.32337 -14.91156 -14.57192 -14.44540 -14.28148 -14.17448 -13.99871 -13.96314 -13.40919 -13.02142 -12.85937 -12.76814 -12.26768 -11.99561 -11.43653 -11.31555 -11.24777 -11.03343 -10.67163 -10.59317 -10.23410 -10.07760 -9.83897 -9.80178 -9.53645 -9.25141 -8.93766 -8.57980 -8.38049 -6.92304 -6.55658 -4.28010 1.02601 1.22962 1.33667 1.80210 2.32789 2.77498 2.79111 3.13773 3.15612 3.31503 3.38609 3.70181 3.88702 4.08505 4.23470 4.51538 4.53133 4.66424 4.87808 4.90213 4.98487 5.03554 5.09613 5.21954 5.33413 5.42134 5.50926 5.71361 5.92264 6.11913 6.36451 6.56896 6.64270 6.75820 6.83217 6.95289 7.03311 7.28286 7.34104 7.67517 7.83000 8.26574 8.47547 8.87835 10.51282 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.004051 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.134525 B = 6910.840947 C = 8652.242659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.573 5.573 3 C 0.532 3.468 4 O -0.469 6.469 5 C 0.067 3.933 6 N -0.426 5.426 7 N -0.489 5.489 8 C 0.557 3.443 9 O -0.487 6.487 10 C -0.167 4.167 11 C -0.062 4.062 12 C -0.175 4.175 13 C -0.071 4.071 14 C -0.142 4.142 15 C -0.028 4.028 16 S 0.093 5.907 17 C -0.580 4.580 18 H 0.108 0.892 19 C 0.105 3.895 20 N -0.858 5.858 21 Si 0.848 3.152 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.235 1.235 25 C 0.706 3.294 26 O -0.519 6.519 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.418 0.582 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.149 0.851 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.474 11.621 17.251 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.321 5.321 3 C 0.319 3.681 4 O -0.339 6.339 5 C -0.059 4.059 6 N -0.254 5.254 7 N -0.242 5.242 8 C 0.347 3.653 9 O -0.359 6.359 10 C -0.183 4.183 11 C -0.082 4.082 12 C -0.199 4.199 13 C -0.094 4.094 14 C -0.166 4.166 15 C -0.147 4.147 16 S 0.356 5.644 17 C -0.726 4.726 18 H 0.126 0.874 19 C -0.107 4.107 20 N -0.491 5.491 21 Si 0.672 3.328 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.159 1.159 25 C 0.408 3.592 26 O -0.389 6.389 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.262 0.738 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.427 12.387 15.651 20.445 hybrid contribution 0.878 -0.682 0.198 1.129 sum -3.549 11.705 15.849 20.020 Atomic orbital electron populations 1.21882 0.74501 1.05092 1.03731 1.46226 1.09642 1.07573 1.68673 1.20673 0.88337 0.84765 0.74345 1.90829 1.78747 1.17788 1.46523 1.22776 0.96313 0.79497 1.07302 1.45590 0.99740 1.01580 1.78486 1.44706 1.27482 1.37625 1.14406 1.18851 0.83791 0.80503 0.82149 1.90809 1.50650 1.63083 1.31376 1.18714 1.00713 1.03943 0.94972 1.20885 0.94942 0.97138 0.95256 1.20729 1.00320 1.00443 0.98370 1.21185 0.98096 0.97526 0.92561 1.21584 0.95682 0.99528 0.99814 1.22492 0.97414 0.96423 0.98402 1.84148 1.40568 1.38818 1.00899 1.23506 1.33382 1.17735 0.97973 0.87442 1.24797 0.95034 0.95134 0.95692 1.69899 1.40757 1.31535 1.06954 0.86899 0.82593 0.81871 0.81455 1.18656 1.19186 1.15853 1.15783 0.80942 0.84498 0.78006 1.91028 1.74405 1.20143 1.53289 0.90729 0.88943 0.89179 0.85417 0.85441 0.73819 0.86810 0.86470 0.86362 0.83398 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.73 59.85 0.64 1.41 16 2 N -0.57 -6.53 3.00 -128.17 -0.39 -6.91 16 3 C 0.53 5.47 8.31 -10.55 -0.09 5.38 16 4 O -0.47 -5.66 17.75 5.60 0.10 -5.56 16 5 C 0.07 0.56 7.88 -4.31 -0.03 0.53 16 6 N -0.43 -5.34 3.41 -65.73 -0.22 -5.56 16 7 N -0.49 -6.35 6.30 30.43 0.19 -6.16 16 8 C 0.56 9.92 7.84 -12.52 -0.10 9.82 16 9 O -0.49 -10.72 14.04 5.27 0.07 -10.65 16 10 C -0.17 -2.96 5.89 -104.75 -0.62 -3.58 16 11 C -0.06 -0.83 9.53 -39.20 -0.37 -1.21 16 12 C -0.17 -2.32 10.02 -39.58 -0.40 -2.72 16 13 C -0.07 -1.11 10.03 -39.54 -0.40 -1.50 16 14 C -0.14 -2.78 9.22 -39.38 -0.36 -3.15 16 15 C -0.03 -0.59 6.14 -38.39 -0.24 -0.83 16 16 S 0.09 2.32 16.53 -107.50 -1.78 0.55 16 17 C -0.58 -15.94 9.54 30.94 0.30 -15.64 16 18 H 0.11 3.02 5.21 -52.49 -0.27 2.75 16 19 C 0.11 2.92 5.50 -17.46 -0.10 2.83 16 20 N -0.86 -24.61 13.96 55.49 0.77 -23.84 16 21 Si 0.85 20.70 27.74 -169.99 -4.71 15.99 16 22 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.23 -5.80 6.74 56.52 0.38 -5.42 16 25 C 0.71 10.26 8.34 -88.02 -0.73 9.52 16 26 O -0.52 -9.63 17.43 5.34 0.09 -9.54 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.86 7.86 -51.93 -0.41 0.45 16 29 H 0.09 0.66 8.00 -51.93 -0.42 0.25 16 30 H 0.13 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.42 3.77 6.86 -182.59 -1.25 2.52 16 33 H 0.11 1.02 6.40 -52.49 -0.34 0.68 16 34 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.15 3.19 5.04 -52.49 -0.26 2.93 16 37 H 0.28 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -36.15 338.33 -7.49 -43.63 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.22 Total: 2.09 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.50 Total: 0.87 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.36 Total: -42.47 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.27 Total: -25.75 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.71 Total: 15.99 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.78 Total: 0.55 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.15 -7.49 -43.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779541989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.426 kcal (2) G-P(sol) polarization free energy of solvation -36.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds