Wall clock time and date at job start Tue Mar 31 2020 18:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34763 * 124.17335 * 2 1 4 4 O 1.21230 * 127.16265 * 0.02562 * 3 2 1 5 5 C 1.51588 * 105.68274 * 179.97438 * 3 2 1 6 6 N 1.47315 * 103.59001 * 0.32451 * 5 3 2 7 7 N 1.40101 * 126.69117 * 179.84082 * 6 5 3 8 8 C 1.34773 * 120.00319 * 254.98491 * 7 6 5 9 9 O 1.21612 * 119.99821 * 359.97438 * 8 7 6 10 10 C 1.47424 * 120.00163 * 180.02562 * 8 7 6 11 11 C 1.39679 * 120.21616 * 359.97438 * 10 8 7 12 12 C 1.37804 * 119.93604 * 180.02562 * 11 10 8 13 13 C 1.38659 * 120.38654 * 0.02562 * 12 11 10 14 14 C 1.37916 * 120.43454 * 0.02562 * 13 12 11 15 15 C 1.39107 * 120.04999 * 359.67768 * 14 13 12 16 16 S 1.76201 * 120.18919 * 180.32264 * 15 14 13 17 17 C 1.76191 * 100.00076 * 6.84336 * 16 15 14 18 18 H 1.08001 * 120.00186 * 5.65012 * 17 16 15 19 19 C 1.38806 * 120.00097 * 185.65705 * 17 16 15 20 20 N 1.31555 * 120.00155 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99870 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47044 * 90.00397 * 21 19 17 23 23 H 1.48505 * 109.47040 * 210.00069 * 21 19 17 24 24 H 1.48500 * 109.47197 * 330.00098 * 21 19 17 25 25 C 1.33793 * 124.17637 * 180.30713 * 2 1 3 26 26 O 1.21533 * 123.77103 * 359.96190 * 25 2 1 27 27 H 1.09005 * 109.47178 * 269.69559 * 1 2 3 28 28 H 1.09004 * 109.47450 * 149.69621 * 1 2 3 29 29 H 1.08997 * 109.47613 * 29.69614 * 1 2 3 30 30 H 1.08999 * 110.77031 * 241.72028 * 5 3 2 31 31 H 1.08999 * 110.43642 * 118.76807 * 5 3 2 32 32 H 0.97007 * 119.99707 * 74.97548 * 7 6 5 33 33 H 1.07996 * 120.02729 * 359.97438 * 11 10 8 34 34 H 1.08007 * 119.80657 * 179.97438 * 12 11 10 35 35 H 1.07997 * 119.77993 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.97018 * 179.97438 * 14 13 12 37 37 H 0.97001 * 120.00212 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2219 1.1149 0.0000 4 8 1.8340 2.2635 0.0004 5 6 3.6596 0.6342 0.0007 6 7 3.5337 -0.8336 -0.0071 7 7 4.5815 -1.7636 -0.0127 8 6 4.8842 -2.4310 -1.1438 9 8 4.2474 -2.2264 -2.1595 10 6 5.9864 -3.4100 -1.1495 11 6 6.7204 -3.6490 0.0146 12 6 7.7499 -4.5650 0.0026 13 6 8.0634 -5.2525 -1.1600 14 6 7.3496 -5.0280 -2.3185 15 6 6.3028 -4.1119 -2.3253 16 16 5.3830 -3.8284 -3.8012 17 6 6.0681 -5.0807 -4.8340 18 1 6.7708 -5.7923 -4.4263 19 6 5.7048 -5.1526 -6.1717 20 7 6.2168 -6.0873 -6.9430 21 14 4.4890 -3.9222 -6.8768 22 1 5.2248 -2.7418 -7.3970 23 1 3.7271 -4.5570 -7.9822 24 1 3.5487 -3.4896 -5.8120 25 6 2.2165 -1.1069 -0.0059 26 8 1.7602 -2.2333 -0.0113 27 1 -0.3634 -0.0055 1.0277 28 1 -0.3634 -0.8873 -0.5185 29 1 -0.3634 0.8926 -0.5091 30 1 4.1789 0.9697 0.8983 31 1 4.1767 0.9794 -0.8946 32 1 5.0893 -1.9270 0.7975 33 1 6.4818 -3.1158 0.9229 34 1 8.3163 -4.7478 0.9038 35 1 8.8719 -5.9685 -1.1582 36 1 7.6005 -5.5674 -3.2199 37 1 5.9626 -6.1379 -7.8778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779541989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:53 Heat of formation + Delta-G solvation = -18.542632 kcal Electronic energy + Delta-G solvation = -25880.652319 eV Core-core repulsion = 21944.481198 eV Total energy + Delta-G solvation = -3936.171121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46857 -41.12844 -39.81883 -39.05356 -37.50423 -36.68708 -34.84772 -34.08842 -31.97008 -31.88575 -28.78909 -28.22554 -28.01321 -25.31898 -23.85942 -23.44591 -22.50113 -21.36098 -20.40712 -19.52311 -18.85462 -18.24622 -17.96772 -17.53859 -17.20298 -17.15409 -16.76121 -16.35152 -15.82320 -15.61949 -15.43302 -15.40549 -15.16724 -15.11565 -14.86474 -14.38587 -13.79478 -13.70892 -13.68891 -13.56118 -13.15339 -13.10930 -12.54307 -12.44715 -12.30776 -11.86054 -11.52496 -11.49134 -11.37879 -11.06455 -10.98324 -10.59403 -10.43125 -10.08717 -9.90577 -8.72160 -8.62499 -6.34179 -0.12758 0.01850 0.46343 0.46647 0.97069 1.19257 1.36845 1.46684 1.59458 1.74632 1.81876 2.11658 2.58145 2.74514 2.82497 2.88182 2.94210 3.73979 3.77486 3.93939 4.12884 4.23280 4.27039 4.38921 4.40455 4.53599 4.58575 4.61050 4.72350 4.73764 5.03546 5.30061 5.46526 5.53628 5.61331 5.64606 5.80886 6.02229 6.14411 6.15697 6.21152 6.70033 6.81594 7.26663 8.48611 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.004051 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.134525 B = 6910.840947 C = 8652.242659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.574 5.574 3 C 0.537 3.463 4 O -0.485 6.485 5 C 0.073 3.927 6 N -0.429 5.429 7 N -0.466 5.466 8 C 0.555 3.445 9 O -0.535 6.535 10 C -0.166 4.166 11 C -0.047 4.047 12 C -0.144 4.144 13 C -0.065 4.065 14 C -0.169 4.169 15 C -0.050 4.050 16 S 0.018 5.982 17 C -0.583 4.583 18 H 0.084 0.916 19 C 0.057 3.943 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.255 1.255 23 H -0.253 1.253 24 H -0.246 1.246 25 C 0.700 3.300 26 O -0.569 6.569 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.180 0.820 31 H 0.138 0.862 32 H 0.442 0.558 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.149 0.851 36 H 0.113 0.887 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 13.728 22.032 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.321 5.321 3 C 0.325 3.675 4 O -0.356 6.356 5 C -0.051 4.051 6 N -0.256 5.256 7 N -0.221 5.221 8 C 0.345 3.655 9 O -0.410 6.410 10 C -0.180 4.180 11 C -0.067 4.067 12 C -0.166 4.166 13 C -0.086 4.086 14 C -0.193 4.193 15 C -0.167 4.167 16 S 0.274 5.726 17 C -0.730 4.730 18 H 0.101 0.899 19 C -0.150 4.150 20 N -0.540 5.540 21 Si 0.724 3.276 22 H -0.179 1.179 23 H -0.177 1.177 24 H -0.170 1.170 25 C 0.402 3.598 26 O -0.443 6.443 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.197 0.803 31 H 0.156 0.844 32 H 0.291 0.709 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.104 14.543 20.570 25.382 hybrid contribution 0.627 -1.268 -0.781 1.616 sum -2.476 13.274 19.788 23.957 Atomic orbital electron populations 1.22094 0.73372 1.05167 1.05209 1.46338 1.10493 1.07098 1.68138 1.20891 0.88929 0.84126 0.73510 1.90837 1.79151 1.18222 1.47367 1.23114 0.95366 0.76347 1.10222 1.45795 0.99036 1.03043 1.77681 1.44231 1.26866 1.37140 1.13830 1.18972 0.83373 0.80520 0.82648 1.90802 1.52135 1.64520 1.33586 1.19053 1.00883 1.02944 0.95149 1.21545 0.93219 0.96545 0.95352 1.21431 0.98902 0.97322 0.98931 1.21604 0.97648 0.97684 0.91649 1.21454 0.96993 1.00206 1.00679 1.22473 0.98228 0.98502 0.97503 1.84097 1.44566 1.39997 1.03930 1.23607 1.32627 1.18170 0.98566 0.89850 1.25522 0.96656 0.96705 0.96127 1.69972 1.43053 1.33521 1.07467 0.86082 0.80708 0.80203 0.80579 1.17910 1.17697 1.17010 1.16067 0.81762 0.84433 0.77571 1.90993 1.75486 1.22175 1.55681 0.88616 0.90124 0.87844 0.80293 0.84431 0.70929 0.80786 0.80823 0.83346 0.86891 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.73 127.77 1.37 2.71 16 2 N -0.57 -12.18 3.00 -796.67 -2.39 -14.57 16 3 C 0.54 9.64 8.31 87.94 0.73 10.37 16 4 O -0.49 -10.51 17.75 -2.87 -0.05 -10.56 16 5 C 0.07 0.94 7.88 85.76 0.68 1.61 16 6 N -0.43 -9.47 3.41 -480.31 -1.64 -11.11 16 7 N -0.47 -10.40 6.30 -175.89 -1.11 -11.51 16 8 C 0.56 18.87 7.84 86.66 0.68 19.55 16 9 O -0.53 -23.92 14.04 -4.07 -0.06 -23.98 16 10 C -0.17 -5.50 5.89 -19.95 -0.12 -5.62 16 11 C -0.05 -0.97 9.53 22.52 0.21 -0.76 16 12 C -0.14 -2.84 10.02 22.27 0.22 -2.61 16 13 C -0.06 -1.79 10.03 22.29 0.22 -1.56 16 14 C -0.17 -6.74 9.22 22.40 0.21 -6.54 16 15 C -0.05 -2.15 6.14 23.04 0.14 -2.01 16 16 S 0.02 0.94 16.53 -56.49 -0.93 0.01 16 17 C -0.58 -34.64 9.54 67.96 0.65 -34.00 16 18 H 0.08 5.17 5.21 -2.91 -0.02 5.15 16 19 C 0.06 3.37 5.50 84.87 0.47 3.83 16 20 N -0.90 -55.11 13.96 21.65 0.30 -54.81 16 21 Si 0.90 45.43 27.74 68.60 1.90 47.33 16 22 H -0.25 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.25 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.25 -12.70 6.74 99.48 0.67 -12.03 16 25 C 0.70 19.41 8.34 179.44 1.50 20.91 16 26 O -0.57 -21.15 17.43 -3.82 -0.07 -21.22 16 27 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.52 7.86 -2.39 -0.02 1.50 16 29 H 0.10 1.40 8.00 -2.39 -0.02 1.38 16 30 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.14 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.44 5.36 6.86 -213.31 -1.46 3.90 16 33 H 0.17 1.56 6.40 -2.91 -0.02 1.54 16 34 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.11 5.31 5.04 -2.91 -0.01 5.29 16 37 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -90.01 338.33 2.58 -87.43 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -0.34 Total: 7.08 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.96 Total: 5.89 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -4.84 Total: -91.99 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -0.17 Total: -55.75 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -0.93 Total: 0.01 kcal Total: -90.01 2.58 -87.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779541989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.892 kcal (2) G-P(sol) polarization free energy of solvation -90.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds