Wall clock time and date at job start Tue Mar 31 2020 18:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99864 * 2 1 4 4 S 1.65599 * 119.99998 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40227 * 336.45826 * 4 2 1 6 6 O 1.42100 * 106.40324 * 203.54339 * 4 2 1 7 7 C 1.76199 * 107.21905 * 90.00171 * 4 2 1 8 8 C 1.34517 * 125.78697 * 89.99987 * 7 4 2 9 9 C 1.41385 * 106.83572 * 179.97438 * 8 7 4 10 10 C 1.34506 * 106.84311 * 0.02562 * 9 8 7 11 11 C 1.50703 * 125.79043 * 180.02562 * 10 9 8 12 12 S 1.81401 * 109.47095 * 90.00053 * 11 10 9 13 13 O 1.42103 * 109.46870 * 296.39222 * 12 11 10 14 14 C 1.81392 * 102.99983 * 180.02562 * 12 11 10 15 15 C 1.53010 * 109.47199 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47097 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00480 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99583 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00216 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47078 * 120.00020 * 20 18 16 23 23 H 1.48499 * 109.46961 * 240.00194 * 20 18 16 24 24 O 1.34299 * 125.78794 * 269.69269 * 7 4 2 25 25 H 1.08992 * 109.47416 * 269.99910 * 1 2 3 26 26 H 1.09004 * 109.47096 * 30.00051 * 1 2 3 27 27 H 1.08998 * 109.46804 * 149.99288 * 1 2 3 28 28 H 1.08996 * 109.47167 * 269.99576 * 3 2 1 29 29 H 1.09002 * 109.47465 * 30.00110 * 3 2 1 30 30 H 1.09005 * 109.46555 * 149.99757 * 3 2 1 31 31 H 1.08001 * 126.57970 * 359.96700 * 8 7 4 32 32 H 1.07999 * 126.57298 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47381 * 209.99805 * 11 10 9 34 34 H 1.08997 * 109.47293 * 330.00385 * 11 10 9 35 35 H 1.09000 * 109.47329 * 299.99683 * 14 12 11 36 36 H 1.08998 * 109.47352 * 60.00366 * 14 12 11 37 37 H 1.09000 * 109.46745 * 300.00070 * 15 14 12 38 38 H 1.08998 * 109.46646 * 59.99963 * 15 14 12 39 39 H 0.97001 * 119.99780 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5456 6 8 3.5759 -1.1566 0.5450 7 6 2.5538 -1.8866 -1.6822 8 6 3.6153 -1.5430 -2.4337 9 6 3.4159 -2.1164 -3.7105 10 6 2.2444 -2.7756 -3.6631 11 6 1.6192 -3.5446 -4.7983 12 16 2.1847 -5.2674 -4.7454 13 8 3.5897 -5.3113 -4.9535 14 6 1.3401 -6.0180 -6.1644 15 6 1.7197 -7.4971 -6.2600 16 6 1.0184 -8.1205 -7.4392 17 1 0.3675 -7.5216 -8.0589 18 6 1.2088 -9.4553 -7.7277 19 7 2.0026 -10.1842 -6.9741 20 14 0.3401 -10.2279 -9.1900 21 1 -0.4896 -9.2020 -9.8715 22 1 1.3492 -10.7604 -10.1404 23 1 -0.5303 -11.3354 -8.7200 24 8 1.7295 -2.6378 -2.4303 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.4580 -0.9439 -2.1215 32 1 4.0774 -2.0398 -4.5608 33 1 0.5338 -3.5155 -4.7028 34 1 1.9127 -3.0950 -5.7469 35 1 0.2616 -5.9269 -6.0351 36 1 1.6409 -5.5063 -7.0786 37 1 2.7981 -7.5878 -6.3895 38 1 1.4192 -8.0091 -5.3458 39 1 2.1362 -11.1234 -7.1769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790140663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:39 Heat of formation + Delta-G solvation = -89.466960 kcal Electronic energy + Delta-G solvation = -23917.771730 eV Core-core repulsion = 20081.676300 eV Total energy + Delta-G solvation = -3836.095430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.87360 -37.69448 -36.64205 -36.24123 -35.38686 -33.75484 -33.53493 -32.33551 -30.97335 -28.58533 -27.41332 -25.36156 -25.14421 -22.41295 -21.79049 -20.95296 -19.60886 -18.62958 -17.89774 -17.30118 -16.75476 -16.51855 -16.28466 -15.92531 -15.03263 -14.90751 -14.72433 -14.69859 -14.45724 -13.96973 -13.76360 -13.55254 -13.43742 -13.21394 -13.07617 -12.81147 -12.57014 -12.48494 -12.38772 -12.13111 -12.00573 -11.91302 -11.70028 -11.40637 -11.04496 -10.80667 -10.38768 -10.33140 -10.23102 -9.76332 -9.65154 -9.38967 -8.83266 -8.47104 -7.86361 -6.09562 -4.14337 -0.17224 0.77899 1.63117 2.25334 2.43191 2.71505 2.94412 3.25515 3.28745 3.33147 3.36319 3.96300 4.12835 4.28296 4.37647 4.38824 4.58136 4.84936 4.89054 4.98692 5.12302 5.17947 5.23287 5.25640 5.29012 5.35202 5.42818 5.45330 5.60492 5.81839 5.94337 6.00913 6.07414 6.58492 6.68810 7.42165 7.52305 7.84952 8.24822 8.90426 9.50233 11.01055 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.002194 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.051545 B =12761.494300 C =12876.526233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.001 6.001 3 C 0.079 3.921 4 S 2.725 3.275 5 O -0.934 6.934 6 O -0.935 6.935 7 C -0.595 4.595 8 C -0.074 4.074 9 C -0.227 4.227 10 C 0.076 3.924 11 C -0.397 4.397 12 S 1.235 4.765 13 O -0.833 6.833 14 C -0.415 4.415 15 C 0.037 3.963 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 O -0.116 6.116 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.024 0.976 38 H 0.030 0.970 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 24.891 14.600 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.841 5.841 3 C -0.066 4.066 4 S 2.808 3.192 5 O -0.924 6.924 6 O -0.926 6.926 7 C -0.726 4.726 8 C -0.095 4.095 9 C -0.248 4.248 10 C 0.021 3.979 11 C -0.527 4.527 12 S 1.433 4.567 13 O -0.828 6.828 14 C -0.555 4.555 15 C -0.002 4.002 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.530 5.530 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 O -0.011 6.011 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.176 0.824 33 H 0.157 0.843 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.467 23.781 16.062 28.906 hybrid contribution 0.338 0.739 -3.867 3.951 sum -3.129 24.519 12.195 27.563 Atomic orbital electron populations 1.21597 0.77354 1.03756 1.02820 1.57369 1.15815 1.21615 1.89300 1.21697 0.97503 0.84938 1.02448 1.01601 0.73366 0.72489 0.71776 1.93613 1.65615 1.58086 1.75064 1.93632 1.40406 1.84656 1.73878 1.35697 1.01852 1.13552 1.21453 1.21919 0.97155 0.97697 0.92762 1.21839 0.98912 1.04450 0.99639 1.22092 0.93819 0.97384 0.84625 1.26721 1.09188 1.20631 0.96175 1.71220 0.90601 0.85362 1.09499 1.93112 1.25746 1.79754 1.84192 1.27631 1.08668 1.08083 1.11125 1.18821 0.97657 0.85179 0.98504 1.21150 1.28003 0.94681 1.12108 0.92350 1.25059 0.95302 0.97341 0.96818 1.69966 1.36797 1.07588 1.38626 0.86467 0.79423 0.79275 0.82415 1.19750 1.20965 1.20771 1.84126 1.42484 1.54737 1.19741 0.91670 0.90661 0.90350 0.92453 0.90052 0.89573 0.81647 0.82383 0.84273 0.86501 0.87169 0.90531 0.95790 0.95154 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.29 59.85 0.62 1.10 16 2 N -1.00 -7.08 3.58 -129.20 -0.46 -7.54 16 3 C 0.08 0.37 10.66 59.85 0.64 1.01 16 4 S 2.72 28.71 5.80 -107.50 -0.62 28.09 16 5 O -0.93 -12.33 17.09 -57.23 -0.98 -13.31 16 6 O -0.94 -11.26 16.43 -57.17 -0.94 -12.20 16 7 C -0.60 -7.21 7.36 29.42 0.22 -6.99 16 8 C -0.07 -0.87 10.63 -39.70 -0.42 -1.30 16 9 C -0.23 -3.02 10.81 -39.70 -0.43 -3.45 16 10 C 0.08 1.03 6.58 -35.63 -0.23 0.79 16 11 C -0.40 -4.71 6.46 36.01 0.23 -4.48 16 12 S 1.23 19.28 13.14 -107.50 -1.41 17.87 16 13 O -0.83 -18.10 18.14 -35.23 -0.64 -18.74 16 14 C -0.41 -7.63 5.86 37.16 0.22 -7.41 16 15 C 0.04 0.93 4.98 -27.88 -0.14 0.79 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 O -0.12 -1.55 10.65 5.71 0.06 -1.48 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 27 H 0.08 0.45 7.79 -51.93 -0.40 0.05 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.22 8.07 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 7.02 -51.93 -0.36 0.07 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.14 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.11 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -39.28 365.43 -8.86 -48.14 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.38 Total: -3.75 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 0.29 Total: -33.06 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.27 Total: -33.30 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -2.50 Total: -45.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -2.04 Total: 45.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.28 -8.86 -48.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790140663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.328 kcal (2) G-P(sol) polarization free energy of solvation -39.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds