Wall clock time and date at job start Tue Mar 31 2020 18:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99864 * 2 1 4 4 S 1.65599 * 119.99998 * 179.97438 * 2 1 3 5 5 O 1.42106 * 106.40227 * 336.45826 * 4 2 1 6 6 O 1.42100 * 106.40324 * 203.54339 * 4 2 1 7 7 C 1.76199 * 107.21905 * 90.00171 * 4 2 1 8 8 C 1.34517 * 125.78697 * 89.99987 * 7 4 2 9 9 C 1.41385 * 106.83572 * 179.97438 * 8 7 4 10 10 C 1.34506 * 106.84311 * 0.02562 * 9 8 7 11 11 C 1.50703 * 125.79043 * 180.02562 * 10 9 8 12 12 S 1.81401 * 109.47095 * 90.00053 * 11 10 9 13 13 O 1.42103 * 109.46870 * 296.39222 * 12 11 10 14 14 C 1.81392 * 102.99983 * 180.02562 * 12 11 10 15 15 C 1.53010 * 109.47199 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47097 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00480 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99583 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00216 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47078 * 120.00020 * 20 18 16 23 23 H 1.48499 * 109.46961 * 240.00194 * 20 18 16 24 24 O 1.34299 * 125.78794 * 269.69269 * 7 4 2 25 25 H 1.08992 * 109.47416 * 269.99910 * 1 2 3 26 26 H 1.09004 * 109.47096 * 30.00051 * 1 2 3 27 27 H 1.08998 * 109.46804 * 149.99288 * 1 2 3 28 28 H 1.08996 * 109.47167 * 269.99576 * 3 2 1 29 29 H 1.09002 * 109.47465 * 30.00110 * 3 2 1 30 30 H 1.09005 * 109.46555 * 149.99757 * 3 2 1 31 31 H 1.08001 * 126.57970 * 359.96700 * 8 7 4 32 32 H 1.07999 * 126.57298 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47381 * 209.99805 * 11 10 9 34 34 H 1.08997 * 109.47293 * 330.00385 * 11 10 9 35 35 H 1.09000 * 109.47329 * 299.99683 * 14 12 11 36 36 H 1.08998 * 109.47352 * 60.00366 * 14 12 11 37 37 H 1.09000 * 109.46745 * 300.00070 * 15 14 12 38 38 H 1.08998 * 109.46646 * 59.99963 * 15 14 12 39 39 H 0.97001 * 119.99780 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.4113 -2.4063 0.5456 6 8 3.5759 -1.1566 0.5450 7 6 2.5538 -1.8866 -1.6822 8 6 3.6153 -1.5430 -2.4337 9 6 3.4159 -2.1164 -3.7105 10 6 2.2444 -2.7756 -3.6631 11 6 1.6192 -3.5446 -4.7983 12 16 2.1847 -5.2674 -4.7454 13 8 3.5897 -5.3113 -4.9535 14 6 1.3401 -6.0180 -6.1644 15 6 1.7197 -7.4971 -6.2600 16 6 1.0184 -8.1205 -7.4392 17 1 0.3675 -7.5216 -8.0589 18 6 1.2088 -9.4553 -7.7277 19 7 2.0026 -10.1842 -6.9741 20 14 0.3401 -10.2279 -9.1900 21 1 -0.4896 -9.2020 -9.8715 22 1 1.3492 -10.7604 -10.1404 23 1 -0.5303 -11.3354 -8.7200 24 8 1.7295 -2.6378 -2.4303 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5139 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5139 31 1 4.4580 -0.9439 -2.1215 32 1 4.0774 -2.0398 -4.5608 33 1 0.5338 -3.5155 -4.7028 34 1 1.9127 -3.0950 -5.7469 35 1 0.2616 -5.9269 -6.0351 36 1 1.6409 -5.5063 -7.0786 37 1 2.7981 -7.5878 -6.3895 38 1 1.4192 -8.0091 -5.3458 39 1 2.1362 -11.1234 -7.1769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790140663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:38 Heat of formation + Delta-G solvation = -120.627431 kcal Electronic energy + Delta-G solvation = -23919.122949 eV Core-core repulsion = 20081.676300 eV Total energy + Delta-G solvation = -3837.446650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.84461 -38.59350 -37.23942 -37.05865 -36.91568 -35.75160 -34.51937 -33.31843 -32.90275 -28.96863 -28.44061 -27.29072 -25.64056 -23.42390 -23.33935 -22.20330 -20.46463 -19.41756 -18.85103 -18.71552 -18.38984 -17.47039 -17.22757 -16.94423 -16.52197 -16.09515 -15.96639 -15.60518 -15.46961 -15.22278 -14.84702 -14.71606 -14.33909 -14.16913 -14.14985 -13.81496 -13.62303 -13.44780 -13.40251 -13.31122 -13.06718 -12.86709 -12.72802 -12.66671 -12.60384 -12.52399 -12.04924 -11.97291 -11.57488 -11.33991 -11.15533 -10.61758 -10.19335 -10.02824 -9.19825 -8.22721 -6.35979 -0.97424 -0.25751 0.47857 1.24676 1.39947 1.40392 1.52571 1.53394 1.66934 1.92777 2.39191 2.46730 2.75888 3.10057 3.20186 3.44103 3.67591 3.82497 4.06180 4.23183 4.26231 4.29552 4.44648 4.48703 4.55062 4.57701 4.69072 4.79479 4.97541 4.99756 5.00805 5.04268 5.09835 5.41497 5.47172 5.48451 5.61340 5.75596 6.15017 6.79752 7.33794 8.88595 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.002194 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.051545 B =12761.494300 C =12876.526233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.991 5.991 3 C 0.069 3.931 4 S 2.738 3.262 5 O -0.964 6.964 6 O -0.954 6.954 7 C -0.598 4.598 8 C -0.080 4.080 9 C -0.242 4.242 10 C 0.056 3.944 11 C -0.378 4.378 12 S 1.272 4.728 13 O -0.903 6.903 14 C -0.413 4.413 15 C 0.033 3.967 16 C -0.538 4.538 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.258 1.258 22 H -0.285 1.285 23 H -0.273 1.273 24 O -0.123 6.123 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.191 0.809 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.071 0.929 37 H -0.024 1.024 38 H 0.023 0.977 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 27.317 14.394 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.834 5.834 3 C -0.075 4.075 4 S 2.820 3.180 5 O -0.954 6.954 6 O -0.944 6.944 7 C -0.727 4.727 8 C -0.100 4.100 9 C -0.263 4.263 10 C 0.000 4.000 11 C -0.512 4.512 12 S 1.474 4.526 13 O -0.898 6.898 14 C -0.552 4.552 15 C -0.006 4.006 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.794 3.206 21 H -0.182 1.182 22 H -0.211 1.211 23 H -0.199 1.199 24 O -0.017 6.017 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.208 0.792 32 H 0.180 0.820 33 H 0.202 0.798 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.090 0.910 37 H -0.005 1.005 38 H 0.041 0.959 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.605 26.163 15.825 31.086 hybrid contribution 0.989 0.212 -3.684 3.820 sum -4.616 26.375 12.142 29.400 Atomic orbital electron populations 1.21871 0.76047 1.04825 1.03863 1.57173 1.16535 1.21004 1.88677 1.21986 0.97634 0.84186 1.03727 1.01127 0.72810 0.72846 0.71223 1.93570 1.66219 1.60005 1.75590 1.93600 1.41579 1.85030 1.74189 1.36106 1.01783 1.13012 1.21798 1.22268 0.97837 0.97775 0.92146 1.22135 0.99041 1.04668 1.00480 1.22277 0.94308 0.98292 0.85101 1.26477 1.11673 1.16549 0.96545 1.70454 0.88040 0.87487 1.06628 1.93010 1.29481 1.82921 1.84415 1.27493 1.11386 1.03806 1.12465 1.18680 0.94488 0.89816 0.97593 1.21669 1.27933 0.95208 1.12902 0.91294 1.26077 0.96088 0.98194 0.99936 1.70111 1.38564 1.07997 1.40763 0.85329 0.78242 0.78571 0.78473 1.18160 1.21067 1.19881 1.84112 1.42862 1.55038 1.19737 0.90742 0.87954 0.90961 0.91147 0.87416 0.90042 0.79200 0.82036 0.79839 0.85218 0.83396 0.91004 1.00547 0.95911 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.29 127.77 1.31 1.96 16 2 N -0.99 -11.94 3.58 -562.69 -2.02 -13.95 16 3 C 0.07 0.47 10.66 127.77 1.36 1.83 16 4 S 2.74 55.11 5.80 -56.49 -0.33 54.78 16 5 O -0.96 -25.06 17.09 -127.95 -2.19 -27.24 16 6 O -0.95 -22.25 16.43 -128.00 -2.10 -24.36 16 7 C -0.60 -13.78 7.36 66.97 0.49 -13.29 16 8 C -0.08 -1.77 10.63 22.19 0.24 -1.54 16 9 C -0.24 -6.15 10.81 22.19 0.24 -5.91 16 10 C 0.06 1.40 6.58 24.83 0.16 1.57 16 11 C -0.38 -8.01 6.46 71.24 0.46 -7.55 16 12 S 1.27 39.31 13.14 -56.49 -0.74 38.57 16 13 O -0.90 -40.53 18.14 -148.98 -2.70 -43.24 16 14 C -0.41 -14.89 5.86 71.99 0.42 -14.47 16 15 C 0.03 1.68 4.98 29.85 0.15 1.83 16 16 C -0.54 -29.87 9.11 25.60 0.23 -29.63 16 17 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 20 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 O -0.12 -3.08 10.65 -2.49 -0.03 -3.11 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.10 0.31 8.07 -2.39 -0.02 0.29 16 27 H 0.07 0.71 7.79 -2.39 -0.02 0.69 16 28 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.20 8.07 -2.39 -0.02 0.19 16 30 H 0.08 0.66 7.02 -2.38 -0.02 0.64 16 31 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.18 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.15 4.14 8.14 -2.39 -0.02 4.12 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -88.25 365.43 -1.21 -89.46 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.05 Total: 5.27 kcal Atomic # 6 Polarization: -70.56 SS G_CDS: 5.53 Total: -65.03 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.73 Total: -70.76 kcal Atomic # 8 Polarization: -90.93 SS G_CDS: -7.02 Total: -97.95 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 94.42 SS G_CDS: -1.07 Total: 93.35 kcal Total: -88.25 -1.21 -89.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790140663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.169 kcal (2) G-P(sol) polarization free energy of solvation -88.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds