Wall clock time and date at job start Tue Mar 31 2020 19:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35077 * 126.07993 * 2 1 4 4 H 0.96998 * 125.97930 * 0.02730 * 3 2 1 5 5 N 1.40072 * 108.04303 * 180.02562 * 3 2 1 6 6 C 1.31218 * 108.18962 * 0.02562 * 5 3 2 7 7 N 1.40187 * 125.96592 * 179.97438 * 6 5 3 8 8 C 1.34774 * 120.00200 * 359.97104 * 7 6 5 9 9 O 1.21293 * 119.99710 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00319 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.47477 * 180.02562 * 10 8 7 12 12 C 1.38297 * 119.93209 * 269.72732 * 11 10 8 13 13 C 1.38101 * 120.06998 * 179.72334 * 12 11 10 14 14 C 1.38877 * 119.93091 * 0.56950 * 13 12 11 15 15 O 1.35748 * 120.06931 * 179.68389 * 14 13 12 16 16 C 1.34830 * 117.00044 * 174.48692 * 15 14 13 17 17 H 1.08005 * 120.00104 * 5.05343 * 16 15 14 18 18 C 1.38647 * 120.00278 * 185.05493 * 16 15 14 19 19 N 1.31564 * 120.00112 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99930 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47369 * 89.99859 * 20 18 16 22 22 H 1.48502 * 109.47104 * 210.00004 * 20 18 16 23 23 H 1.48496 * 109.47109 * 329.99989 * 20 18 16 24 24 C 1.38885 * 119.85806 * 359.70043 * 14 13 12 25 25 C 1.38097 * 119.93588 * 0.02562 * 24 14 13 26 26 C 1.35282 * 126.07574 * 179.69638 * 2 1 3 27 27 Cl 1.73600 * 126.07330 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46922 * 90.01875 * 1 2 3 29 29 H 1.09005 * 109.46762 * 330.02442 * 1 2 3 30 30 H 1.08994 * 109.47205 * 210.02091 * 1 2 3 31 31 H 0.97000 * 119.99409 * 179.97438 * 7 6 5 32 32 H 1.09008 * 109.46764 * 300.00199 * 10 8 7 33 33 H 1.08994 * 109.47081 * 59.99671 * 10 8 7 34 34 H 1.08003 * 119.96316 * 359.97435 * 12 11 10 35 35 H 1.08001 * 120.03360 * 180.27034 * 13 12 11 36 36 H 0.97000 * 120.00024 * 180.02562 * 19 18 16 37 37 H 1.08005 * 120.03004 * 179.97438 * 24 14 13 38 38 H 1.07993 * 119.96514 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3025 1.0917 0.0000 4 1 2.0037 2.0145 0.0004 5 7 3.6344 0.6580 -0.0006 6 6 3.6379 -0.6542 -0.0015 7 7 4.7747 -1.4745 -0.0028 8 6 6.0042 -0.9223 -0.0039 9 8 6.1270 0.2844 -0.0032 10 6 7.2262 -1.8041 -0.0059 11 6 8.4649 -0.9459 -0.0061 12 6 9.0344 -0.5564 -1.2047 13 6 10.1663 0.2348 -1.2082 14 6 10.7396 0.6294 -0.0064 15 8 11.8559 1.4018 -0.0066 16 6 12.2948 1.8437 1.1892 17 1 11.8118 1.5140 2.0972 18 6 13.3660 2.7216 1.2534 19 7 13.7945 3.1524 2.4203 20 14 14.2019 3.2915 -0.3169 21 1 13.5401 4.5260 -0.8101 22 1 15.6335 3.5736 -0.0413 23 1 14.0965 2.2278 -1.3478 24 6 10.1686 0.2319 1.1956 25 6 9.0334 -0.5545 1.1925 26 6 2.3036 -1.0934 0.0058 27 17 1.7715 -2.7458 0.0152 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 0.8903 0.5135 30 1 -0.3633 -0.8897 0.5141 31 1 4.6764 -2.4395 -0.0030 32 1 7.2211 -2.4340 0.8838 33 1 7.2191 -2.4328 -0.8962 34 1 8.5910 -0.8679 -2.1389 35 1 10.6080 0.5422 -2.1446 36 1 14.5437 3.7668 2.4652 37 1 10.6124 0.5369 2.1318 38 1 8.5893 -0.8642 2.1269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790984324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:45 Heat of formation + Delta-G solvation = 11.525224 kcal Electronic energy + Delta-G solvation = -24704.255066 eV Core-core repulsion = 20767.344079 eV Total energy + Delta-G solvation = -3936.910987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.56803 -41.12458 -40.43321 -38.35477 -37.43504 -36.04749 -34.53262 -33.41204 -32.76432 -31.81547 -31.27592 -28.50731 -28.01450 -26.87746 -23.95184 -23.68751 -22.09441 -21.81452 -20.84567 -19.83292 -19.18555 -18.92958 -17.58249 -17.49463 -16.95220 -16.62014 -16.27999 -15.88266 -15.69804 -15.67098 -15.53476 -15.27597 -14.88079 -14.42504 -14.36876 -14.23338 -14.07607 -13.75283 -13.22727 -13.05872 -12.88066 -12.86974 -12.53712 -12.43628 -12.35472 -12.25386 -12.04732 -11.93826 -11.65002 -11.28774 -10.98837 -10.85575 -9.85044 -9.79058 -9.36279 -9.00171 -8.51359 -6.23934 0.58273 0.58521 0.65814 1.05232 1.11546 1.29124 1.33962 1.50363 1.57040 1.99992 2.27025 2.31417 2.76866 3.03676 3.17085 3.54393 3.69704 3.84077 4.03201 4.06909 4.14042 4.19639 4.46020 4.54835 4.59070 4.68023 4.72458 4.81016 4.87067 4.98006 5.12067 5.24885 5.36434 5.48100 5.55951 5.72813 5.78903 5.89670 5.95976 6.24587 6.32088 6.66525 6.82792 7.18747 7.57464 8.60479 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.025241 B = 0.002120 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.046124 B =13204.989407 C =13671.173346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.138 3.862 3 N -0.459 5.459 4 H 0.458 0.542 5 N -0.318 5.318 6 C 0.304 3.696 7 N -0.630 5.630 8 C 0.504 3.496 9 O -0.530 6.530 10 C -0.072 4.072 11 C -0.140 4.140 12 C -0.057 4.057 13 C -0.194 4.194 14 C 0.119 3.881 15 O -0.246 6.246 16 C -0.400 4.400 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.973 3.027 21 H -0.268 1.268 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.063 4.063 26 C -0.227 4.227 27 Cl -0.022 7.022 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.437 0.563 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.285 0.715 37 H 0.106 0.894 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.920 -14.601 -7.498 35.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.006 3.994 3 N -0.172 5.172 4 H 0.307 0.693 5 N -0.149 5.149 6 C 0.046 3.954 7 N -0.283 5.283 8 C 0.292 3.708 9 O -0.401 6.401 10 C -0.111 4.111 11 C -0.141 4.141 12 C -0.075 4.075 13 C -0.213 4.213 14 C 0.070 3.930 15 O -0.153 6.153 16 C -0.476 4.476 17 H 0.096 0.904 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.188 1.188 23 H -0.186 1.186 24 C -0.259 4.259 25 C -0.081 4.081 26 C -0.267 4.267 27 Cl 0.006 6.994 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.277 0.723 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -29.761 -12.673 -7.554 33.217 hybrid contribution 0.217 -0.027 0.267 0.345 sum -29.544 -12.699 -7.287 32.973 Atomic orbital electron populations 1.20770 0.82891 1.06088 1.05631 1.21336 0.96511 0.85409 0.96189 1.46034 1.02563 1.09174 1.59393 0.69325 1.78136 0.97081 1.09886 1.29800 1.19382 0.87328 0.89712 0.99001 1.43090 1.01832 1.10220 1.73200 1.21710 0.84675 0.89532 0.74870 1.90859 1.86009 1.17059 1.46166 1.20558 0.85681 0.96174 1.08697 1.19245 0.98313 1.04021 0.92517 1.20960 0.93102 0.94711 0.98686 1.20508 1.00007 1.05632 0.95188 1.19692 0.86536 0.91447 0.95305 1.83507 1.38280 1.61141 1.32417 1.20710 1.16317 1.27490 0.83097 0.90358 1.25314 0.96781 0.95413 1.01527 1.69736 1.27761 1.33438 1.25534 0.85194 0.77790 0.79101 0.78456 1.19334 1.18841 1.18605 1.21250 1.01136 1.06069 0.97403 1.20923 0.93369 0.95041 0.98728 1.20115 0.90120 0.88467 1.27997 1.98316 1.89611 1.13523 1.97982 0.87643 0.88159 0.88270 0.72264 0.84630 0.83764 0.82785 0.85397 0.90553 0.87627 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.40 10.26 71.24 0.73 0.33 16 2 C 0.14 1.89 7.21 41.38 0.30 2.18 16 3 N -0.46 -8.18 7.35 -47.95 -0.35 -8.53 16 4 H 0.46 5.22 8.96 -213.34 -1.91 3.31 16 5 N -0.32 -9.06 10.92 -54.39 -0.59 -9.65 16 6 C 0.30 7.21 7.82 133.33 1.04 8.26 16 7 N -0.63 -12.50 5.45 -307.45 -1.68 -14.17 16 8 C 0.50 12.94 7.79 87.66 0.68 13.62 16 9 O -0.53 -20.09 14.76 -3.07 -0.05 -20.13 16 10 C -0.07 -1.36 5.83 29.10 0.17 -1.19 16 11 C -0.14 -4.31 4.38 -19.84 -0.09 -4.40 16 12 C -0.06 -1.84 9.69 22.25 0.22 -1.63 16 13 C -0.19 -7.96 9.99 22.39 0.22 -7.74 16 14 C 0.12 5.96 6.65 22.58 0.15 6.11 16 15 O -0.25 -14.11 8.59 -22.72 -0.20 -14.31 16 16 C -0.40 -24.75 9.95 67.92 0.68 -24.08 16 17 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 18 C 0.01 0.47 5.49 84.83 0.47 0.93 16 19 N -0.92 -57.12 13.96 21.61 0.30 -56.82 16 20 Si 0.97 47.32 28.62 68.60 1.96 49.28 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 24 C -0.24 -11.31 9.17 22.39 0.21 -11.11 16 25 C -0.06 -2.31 9.69 22.25 0.22 -2.10 16 26 C -0.23 -3.93 6.66 22.13 0.15 -3.78 16 27 Cl -0.02 -0.28 28.73 -2.72 -0.08 -0.36 16 28 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.10 0.33 7.89 -2.39 -0.02 0.31 16 31 H 0.44 5.03 8.69 -92.71 -0.81 4.23 16 32 H 0.14 1.71 8.08 -2.38 -0.02 1.69 16 33 H 0.14 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 37 H 0.11 5.47 5.64 -2.91 -0.02 5.46 16 38 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -87.49 351.83 2.89 -84.59 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -1.57 Total: 14.69 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 5.14 Total: -24.58 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -2.32 Total: -89.17 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.24 Total: -34.44 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.96 Total: 49.28 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -87.49 2.89 -84.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790984324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.118 kcal (2) G-P(sol) polarization free energy of solvation -87.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds