Wall clock time and date at job start Tue Mar 31 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48509 * 109.46887 * 269.99506 * 3 2 1 5 5 H 1.48494 * 109.47359 * 29.99133 * 3 2 1 6 6 H 1.48496 * 109.47121 * 149.99774 * 3 2 1 7 7 C 1.39939 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99674 * 163.71310 * 7 2 1 9 9 C 1.41393 * 120.00569 * 343.71834 * 7 2 1 10 10 C 1.40744 * 120.24070 * 334.18772 * 9 7 2 11 11 C 1.37594 * 119.74290 * 180.32032 * 10 9 7 12 12 C 1.38655 * 120.24869 * 359.66191 * 11 10 9 13 13 C 1.38612 * 120.50174 * 0.02562 * 12 11 10 14 14 C 1.37629 * 120.24871 * 0.02562 * 13 12 11 15 15 C 1.50709 * 120.12758 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47026 * 264.99828 * 15 14 13 17 17 O 1.21275 * 120.00180 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99563 * 179.97438 * 16 15 14 19 19 S 1.65606 * 119.99908 * 180.02562 * 18 16 15 20 20 O 1.42100 * 106.39891 * 311.46837 * 19 18 16 21 21 O 1.42097 * 106.40200 * 178.54309 * 19 18 16 22 22 C 1.76198 * 107.21672 * 65.00299 * 19 18 16 23 23 C 1.39866 * 125.90182 * 270.00329 * 22 19 18 24 24 C 1.35318 * 107.92219 * 179.71770 * 23 22 19 25 25 N 1.34950 * 107.74383 * 0.41872 * 24 23 22 26 26 H 0.96999 * 126.03820 * 179.84180 * 25 24 23 27 27 N 1.30840 * 125.89816 * 89.97525 * 22 19 18 28 28 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12478 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.87452 * 179.68534 * 11 10 9 31 31 H 1.08004 * 119.74444 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.87144 * 179.97438 * 13 12 11 33 33 H 1.09002 * 109.46894 * 144.99886 * 15 14 13 34 34 H 1.08999 * 109.46729 * 25.00460 * 15 14 13 35 35 H 0.97000 * 120.00275 * 0.02562 * 18 16 15 36 36 H 1.08004 * 126.04004 * 359.97438 * 23 22 19 37 37 H 1.07998 * 126.12919 * 180.26530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4002 5 1 1.4396 2.6527 0.6998 6 1 3.5397 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0554 -1.2308 -0.2618 9 6 1.3435 -2.4118 0.3444 10 6 0.2101 -2.3806 1.1781 11 6 -0.4246 -3.5550 1.5115 12 6 0.0443 -4.7652 1.0238 13 6 1.1558 -4.8072 0.1967 14 6 1.8071 -3.6451 -0.1491 15 6 3.0157 -3.6940 -1.0481 16 6 4.2662 -3.7192 -0.2075 17 8 4.1842 -3.6999 1.0023 18 7 5.4758 -3.7643 -0.8004 19 16 6.8501 -3.7926 0.1232 20 8 6.7109 -2.7527 1.0816 21 8 7.9412 -3.8733 -0.7834 22 6 6.8405 -5.3056 1.0261 23 6 6.2783 -5.5020 2.2917 24 6 6.4714 -6.7961 2.6369 25 7 7.1405 -7.3950 1.6296 26 1 7.4184 -8.3239 1.6020 27 7 7.3576 -6.4398 0.6283 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1572 -1.4389 1.5585 30 1 -1.2915 -3.5340 2.1553 31 1 -0.4604 -5.6821 1.2904 32 1 1.5127 -5.7556 -0.1771 33 1 3.0270 -2.8130 -1.6899 34 1 2.9739 -4.5920 -1.6644 35 1 5.5414 -3.7801 -1.7680 36 1 5.7750 -4.7540 2.8865 37 1 6.1500 -7.2649 3.5552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796881551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:04 Heat of formation + Delta-G solvation = -13.534551 kcal Electronic energy + Delta-G solvation = -26528.092257 eV Core-core repulsion = 22592.138303 eV Total energy + Delta-G solvation = -3935.953954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40103 -39.71404 -37.48125 -37.12909 -35.91806 -34.13853 -33.65028 -32.04416 -31.74946 -30.32832 -29.49651 -27.06497 -25.07823 -23.37396 -21.93454 -21.60927 -20.96646 -19.70883 -19.30654 -18.64254 -17.75344 -17.18677 -17.02977 -16.52165 -15.48676 -15.26125 -15.03798 -14.74885 -14.55596 -13.95770 -13.77522 -13.64824 -13.52423 -13.42002 -12.64049 -12.57377 -12.13463 -12.00932 -11.77478 -11.70778 -11.59200 -11.36561 -11.27751 -11.10959 -10.98257 -10.75003 -10.57038 -10.41211 -10.36568 -9.73069 -9.52997 -9.40698 -9.16225 -9.06894 -7.37407 -7.34288 -6.75937 -4.37600 0.13606 1.23573 2.12527 2.45459 2.64787 2.77454 2.90785 3.08456 3.10505 3.16855 3.27756 3.62287 3.95999 4.16669 4.62407 4.70257 4.85247 5.03399 5.28151 5.43099 5.58653 5.68100 5.87486 5.94351 6.19901 6.21599 6.34588 6.45882 6.69804 6.79914 6.91299 7.00626 7.06401 7.25314 7.37701 7.60610 7.86245 8.01021 8.03124 8.09674 8.27306 8.61823 8.88228 8.97153 10.17729 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.004499 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.499713 B = 6221.742482 C = 7621.668574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.079 3.921 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.457 4.457 8 H 0.076 0.924 9 C 0.131 3.869 10 C -0.157 4.157 11 C -0.104 4.104 12 C -0.241 4.241 13 C -0.077 4.077 14 C -0.194 4.194 15 C -0.068 4.068 16 C 0.529 3.471 17 O -0.465 6.465 18 N -1.054 6.054 19 S 2.710 3.290 20 O -0.912 6.912 21 O -0.942 6.942 22 C -0.479 4.479 23 C -0.168 4.168 24 C 0.045 3.955 25 N -0.455 5.455 26 H 0.442 0.558 27 N -0.188 5.188 28 H 0.281 0.719 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.433 0.567 36 H 0.172 0.828 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -10.602 -0.087 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.486 4.486 8 H 0.094 0.906 9 C 0.129 3.871 10 C -0.176 4.176 11 C -0.123 4.123 12 C -0.261 4.261 13 C -0.096 4.096 14 C -0.196 4.196 15 C -0.110 4.110 16 C 0.316 3.684 17 O -0.333 6.333 18 N -0.823 5.823 19 S 2.794 3.206 20 O -0.901 6.901 21 O -0.932 6.932 22 C -0.726 4.726 23 C -0.198 4.198 24 C -0.101 4.101 25 N -0.168 5.168 26 H 0.287 0.713 27 N -0.017 5.017 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.270 0.730 36 H 0.190 0.810 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.550 -10.360 -0.005 14.787 hybrid contribution -0.236 -0.141 0.446 0.524 sum 10.314 -10.501 0.441 14.726 Atomic orbital electron populations 1.69810 1.07529 1.29250 1.35128 1.25877 0.94692 1.01255 0.92133 0.86441 0.81125 0.80784 0.79336 1.19407 1.20027 1.18064 1.19520 0.97279 0.91012 1.40799 0.90565 1.17336 0.90736 0.91190 0.87870 1.21313 0.98878 0.96728 1.00727 1.20686 0.98581 0.93442 0.99581 1.20286 1.01642 0.96158 1.07970 1.20280 0.95915 0.95397 0.97981 1.18993 0.99654 0.94211 1.06724 1.20392 0.89239 1.03880 0.97499 1.21539 0.84365 0.72630 0.89817 1.90836 1.85683 1.42999 1.13752 1.55162 1.22723 1.81993 1.22440 1.02056 0.72457 0.72729 0.73364 1.93691 1.84966 1.49666 1.61774 1.93621 1.49480 1.86620 1.63460 1.34838 1.11022 1.16500 1.10251 1.21442 1.05631 0.97350 0.95353 1.22796 0.97994 0.94327 0.94992 1.46753 1.43831 1.12334 1.13872 0.71286 1.77309 1.17641 0.96278 1.10443 0.90856 0.86436 0.89567 0.89708 0.89788 0.87373 0.89470 0.73013 0.81006 0.79391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.89 10.95 55.55 0.61 -19.28 16 2 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 3 Si 0.90 18.67 29.59 -169.99 -5.03 13.64 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -11.62 8.14 -37.75 -0.31 -11.93 16 8 H 0.08 1.87 6.67 -52.48 -0.35 1.52 16 9 C 0.13 3.35 5.56 -106.82 -0.59 2.76 16 10 C -0.16 -4.04 8.69 -38.87 -0.34 -4.38 16 11 C -0.10 -2.43 10.02 -39.66 -0.40 -2.83 16 12 C -0.24 -5.31 10.05 -39.29 -0.39 -5.71 16 13 C -0.08 -1.67 9.66 -39.67 -0.38 -2.05 16 14 C -0.19 -4.35 4.43 -103.91 -0.46 -4.81 16 15 C -0.07 -1.21 5.18 -29.03 -0.15 -1.36 16 16 C 0.53 9.44 7.28 -10.99 -0.08 9.36 16 17 O -0.46 -9.88 14.06 -11.50 -0.16 -10.04 16 18 N -1.05 -14.85 5.70 31.22 0.18 -14.67 16 19 S 2.71 42.76 5.55 -107.50 -0.60 42.16 16 20 O -0.91 -17.50 16.81 -64.60 -1.09 -18.58 16 21 O -0.94 -15.47 18.02 -57.17 -1.03 -16.50 16 22 C -0.48 -7.26 6.93 -17.36 -0.12 -7.38 16 23 C -0.17 -2.37 9.80 -40.01 -0.39 -2.76 16 24 C 0.05 0.46 11.99 -17.22 -0.21 0.25 16 25 N -0.46 -4.55 7.36 30.45 0.22 -4.32 16 26 H 0.44 2.51 8.96 -182.61 -1.64 0.87 16 27 N -0.19 -2.63 12.70 31.27 0.40 -2.23 16 28 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 29 H 0.12 3.12 6.20 -52.49 -0.33 2.80 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.08 1.66 8.06 -52.48 -0.42 1.23 16 32 H 0.08 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.11 1.85 7.08 -51.93 -0.37 1.48 16 34 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 35 H 0.43 4.21 8.83 -34.47 -0.30 3.91 16 36 H 0.17 2.54 7.95 -52.48 -0.42 2.12 16 37 H 0.19 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -35.04 339.23 -9.94 -44.98 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.65 Total: 8.73 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -3.91 Total: -29.00 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 1.41 Total: -40.51 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -2.28 Total: -45.12 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: 42.76 SS G_CDS: -0.60 Total: 42.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.04 -9.94 -44.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796881551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.447 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds