Wall clock time and date at job start Tue Mar 31 2020 18:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48509 * 109.46887 * 269.99506 * 3 2 1 5 5 H 1.48494 * 109.47359 * 29.99133 * 3 2 1 6 6 H 1.48496 * 109.47121 * 149.99774 * 3 2 1 7 7 C 1.39939 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99674 * 163.71310 * 7 2 1 9 9 C 1.41393 * 120.00569 * 343.71834 * 7 2 1 10 10 C 1.40744 * 120.24070 * 334.18772 * 9 7 2 11 11 C 1.37594 * 119.74290 * 180.32032 * 10 9 7 12 12 C 1.38655 * 120.24869 * 359.66191 * 11 10 9 13 13 C 1.38612 * 120.50174 * 0.02562 * 12 11 10 14 14 C 1.37629 * 120.24871 * 0.02562 * 13 12 11 15 15 C 1.50709 * 120.12758 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47026 * 264.99828 * 15 14 13 17 17 O 1.21275 * 120.00180 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99563 * 179.97438 * 16 15 14 19 19 S 1.65606 * 119.99908 * 180.02562 * 18 16 15 20 20 O 1.42100 * 106.39891 * 311.46837 * 19 18 16 21 21 O 1.42097 * 106.40200 * 178.54309 * 19 18 16 22 22 C 1.76198 * 107.21672 * 65.00299 * 19 18 16 23 23 C 1.39866 * 125.90182 * 270.00329 * 22 19 18 24 24 C 1.35318 * 107.92219 * 179.71770 * 23 22 19 25 25 N 1.34950 * 107.74383 * 0.41872 * 24 23 22 26 26 H 0.96999 * 126.03820 * 179.84180 * 25 24 23 27 27 N 1.30840 * 125.89816 * 89.97525 * 22 19 18 28 28 H 0.97003 * 120.00322 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.12478 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.87452 * 179.68534 * 11 10 9 31 31 H 1.08004 * 119.74444 * 180.02562 * 12 11 10 32 32 H 1.08005 * 119.87144 * 179.97438 * 13 12 11 33 33 H 1.09002 * 109.46894 * 144.99886 * 15 14 13 34 34 H 1.08999 * 109.46729 * 25.00460 * 15 14 13 35 35 H 0.97000 * 120.00275 * 0.02562 * 18 16 15 36 36 H 1.08004 * 126.04004 * 359.97438 * 23 22 19 37 37 H 1.07998 * 126.12919 * 180.26530 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4002 5 1 1.4396 2.6527 0.6998 6 1 3.5397 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0554 -1.2308 -0.2618 9 6 1.3435 -2.4118 0.3444 10 6 0.2101 -2.3806 1.1781 11 6 -0.4246 -3.5550 1.5115 12 6 0.0443 -4.7652 1.0238 13 6 1.1558 -4.8072 0.1967 14 6 1.8071 -3.6451 -0.1491 15 6 3.0157 -3.6940 -1.0481 16 6 4.2662 -3.7192 -0.2075 17 8 4.1842 -3.6999 1.0023 18 7 5.4758 -3.7643 -0.8004 19 16 6.8501 -3.7926 0.1232 20 8 6.7109 -2.7527 1.0816 21 8 7.9412 -3.8733 -0.7834 22 6 6.8405 -5.3056 1.0261 23 6 6.2783 -5.5020 2.2917 24 6 6.4714 -6.7961 2.6369 25 7 7.1405 -7.3950 1.6296 26 1 7.4184 -8.3239 1.6020 27 7 7.3576 -6.4398 0.6283 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1572 -1.4389 1.5585 30 1 -1.2915 -3.5340 2.1553 31 1 -0.4604 -5.6821 1.2904 32 1 1.5127 -5.7556 -0.1771 33 1 3.0270 -2.8130 -1.6899 34 1 2.9739 -4.5920 -1.6644 35 1 5.5414 -3.7801 -1.7680 36 1 5.7750 -4.7540 2.8865 37 1 6.1500 -7.2649 3.5552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796881551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:04 Heat of formation + Delta-G solvation = -40.313642 kcal Electronic energy + Delta-G solvation = -26529.253486 eV Core-core repulsion = 22592.138303 eV Total energy + Delta-G solvation = -3937.115183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.34469 -41.16343 -39.17746 -38.48588 -37.26384 -35.49906 -35.45944 -33.39386 -32.98525 -31.30384 -31.27393 -28.69104 -26.88246 -24.42575 -23.37214 -22.76763 -22.56485 -21.27994 -20.64050 -19.54424 -19.13793 -18.89112 -18.37331 -17.71031 -17.21058 -16.59926 -16.30000 -16.19672 -15.96641 -15.53996 -15.13296 -15.09991 -14.70718 -14.61058 -14.33662 -13.98920 -13.49949 -13.43873 -13.36383 -13.34745 -12.90574 -12.86708 -12.75597 -12.71015 -12.47501 -12.32449 -12.10597 -11.89455 -11.38449 -11.28433 -11.21793 -11.09039 -10.97810 -10.02568 -9.17914 -9.14187 -8.57033 -6.26114 -1.09112 0.22163 1.00038 1.11815 1.20536 1.24276 1.40066 1.49878 1.57826 1.62244 1.94313 2.23447 2.42456 2.81708 3.02682 3.49360 3.79884 3.91941 4.06908 4.09303 4.40491 4.44834 4.52428 4.63345 4.64485 4.75510 4.85083 5.09953 5.17840 5.24186 5.41657 5.58647 5.70899 5.83228 5.92047 6.08330 6.20919 6.26788 6.27083 6.45478 6.65148 6.79003 7.02563 7.15051 8.38812 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.004499 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.499713 B = 6221.742482 C = 7621.668574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.041 3.959 3 Si 0.959 3.041 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.074 0.926 9 C 0.099 3.901 10 C -0.192 4.192 11 C -0.115 4.115 12 C -0.241 4.241 13 C -0.084 4.084 14 C -0.195 4.195 15 C -0.071 4.071 16 C 0.535 3.465 17 O -0.503 6.503 18 N -1.037 6.037 19 S 2.727 3.273 20 O -0.953 6.953 21 O -0.952 6.952 22 C -0.496 4.496 23 C -0.208 4.208 24 C 0.077 3.923 25 N -0.432 5.432 26 H 0.463 0.537 27 N -0.210 5.210 28 H 0.285 0.715 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.452 0.548 36 H 0.155 0.845 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.396 -13.207 -0.612 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.174 4.174 3 Si 0.781 3.219 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.515 4.515 8 H 0.092 0.908 9 C 0.097 3.903 10 C -0.212 4.212 11 C -0.133 4.133 12 C -0.260 4.260 13 C -0.102 4.102 14 C -0.197 4.197 15 C -0.112 4.112 16 C 0.323 3.677 17 O -0.373 6.373 18 N -0.808 5.808 19 S 2.814 3.186 20 O -0.943 6.943 21 O -0.942 6.942 22 C -0.744 4.744 23 C -0.239 4.239 24 C -0.070 4.070 25 N -0.148 5.148 26 H 0.313 0.687 27 N -0.040 5.040 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.293 0.707 36 H 0.173 0.827 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 11.362 -12.967 -0.606 17.252 hybrid contribution -0.481 0.410 0.667 0.919 sum 10.881 -12.557 0.061 16.616 Atomic orbital electron populations 1.69865 1.08630 1.30151 1.36241 1.26547 0.95327 1.03871 0.91623 0.85541 0.79119 0.77363 0.79885 1.17760 1.19269 1.19457 1.19689 0.97333 0.92017 1.42454 0.90752 1.17705 0.91274 0.92735 0.88607 1.21302 1.00495 0.96813 1.02577 1.20944 0.99054 0.93440 0.99858 1.20707 1.01653 0.96599 1.07077 1.20732 0.95434 0.96625 0.97385 1.19462 1.00677 0.93462 1.06084 1.20484 0.87284 1.06387 0.97018 1.21456 0.85138 0.71865 0.89213 1.90835 1.86331 1.44810 1.15367 1.54773 1.21209 1.81214 1.23632 1.01164 0.72142 0.72570 0.72723 1.93643 1.85534 1.52156 1.62938 1.93599 1.49842 1.87002 1.63730 1.34395 1.12675 1.16426 1.10867 1.21546 1.07599 0.99130 0.95576 1.23428 0.95151 0.92770 0.95681 1.46790 1.42323 1.12853 1.12790 0.68746 1.77241 1.18347 0.96466 1.11995 0.90391 0.88719 0.87936 0.86731 0.86076 0.86874 0.84913 0.70665 0.82712 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.80 10.95 21.82 0.24 -42.56 16 2 C 0.04 2.08 5.16 85.26 0.44 2.52 16 3 Si 0.96 39.25 29.59 68.60 2.03 41.28 16 4 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.49 -25.45 8.14 23.46 0.19 -25.26 16 8 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 9 C 0.10 5.17 5.56 -21.29 -0.12 5.05 16 10 C -0.19 -10.22 8.69 22.73 0.20 -10.02 16 11 C -0.11 -5.35 10.02 22.22 0.22 -5.13 16 12 C -0.24 -10.15 10.05 22.46 0.23 -9.92 16 13 C -0.08 -3.40 9.66 22.22 0.21 -3.18 16 14 C -0.19 -8.58 4.43 -19.41 -0.09 -8.67 16 15 C -0.07 -2.37 5.18 29.10 0.15 -2.22 16 16 C 0.54 18.64 7.28 87.66 0.64 19.28 16 17 O -0.50 -21.52 14.06 13.30 0.19 -21.33 16 18 N -1.04 -28.24 5.70 -173.54 -0.99 -29.23 16 19 S 2.73 86.06 5.55 -56.49 -0.31 85.75 16 20 O -0.95 -37.81 16.81 -120.89 -2.03 -39.84 16 21 O -0.95 -30.87 18.02 -128.00 -2.31 -33.18 16 22 C -0.50 -14.60 6.93 85.23 0.59 -14.01 16 23 C -0.21 -5.66 9.80 21.99 0.22 -5.45 16 24 C 0.08 1.31 11.99 83.54 1.00 2.32 16 25 N -0.43 -7.17 7.36 -57.59 -0.42 -7.59 16 26 H 0.46 3.37 8.96 -213.33 -1.91 1.45 16 27 N -0.21 -5.46 12.70 -54.98 -0.70 -6.16 16 28 H 0.29 13.55 8.30 -92.71 -0.77 12.79 16 29 H 0.09 5.34 6.20 -2.91 -0.02 5.32 16 30 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.11 3.73 7.08 -2.39 -0.02 3.72 16 34 H 0.13 3.20 8.05 -2.39 -0.02 3.18 16 35 H 0.45 8.04 8.83 -96.74 -0.85 7.19 16 36 H 0.16 4.70 7.95 -2.91 -0.02 4.68 16 37 H 0.24 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -79.28 339.23 -2.03 -81.31 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -1.61 Total: 26.25 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 3.88 Total: -54.69 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.87 Total: -85.53 kcal Atomic # 8 Polarization: -90.20 SS G_CDS: -4.15 Total: -94.36 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Atomic # 16 Polarization: 86.06 SS G_CDS: -0.31 Total: 85.75 kcal Total: -79.28 -2.03 -81.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796881551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.994 kcal (2) G-P(sol) polarization free energy of solvation -79.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds