Wall clock time and date at job start Tue Mar 31 2020 19:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99993 * 2 1 4 4 H 1.48503 * 109.47002 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47498 * 119.99472 * 3 2 1 6 6 H 1.48501 * 109.47039 * 239.99794 * 3 2 1 7 7 C 1.37875 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00105 * 181.77300 * 7 2 1 9 9 C 1.50702 * 120.00032 * 1.77698 * 7 2 1 10 10 O 1.45200 * 112.84686 * 298.51889 * 9 7 2 11 11 C 1.34742 * 116.99969 * 294.88557 * 10 9 7 12 12 O 1.21512 * 120.00324 * 2.99159 * 11 10 9 13 13 C 1.47476 * 119.99973 * 183.00041 * 11 10 9 14 14 C 1.39814 * 120.08889 * 179.97438 * 13 11 10 15 15 C 1.38064 * 119.90368 * 179.97438 * 14 13 11 16 16 C 1.39607 * 119.98356 * 0.02562 * 15 14 13 17 17 C 1.38833 * 120.06204 * 0.02562 * 16 15 14 18 18 N 1.48022 * 119.88577 * 180.02562 * 17 16 15 19 19 O 1.21802 * 120.00057 * 179.97438 * 18 17 16 20 20 O 1.21801 * 119.99731 * 0.02562 * 18 17 16 21 21 C 1.37781 * 120.22621 * 359.70458 * 17 16 15 22 22 O 1.36347 * 108.58434 * 179.97438 * 16 15 14 23 23 C 1.43969 * 105.53573 * 17.35553 * 22 16 15 24 24 O 1.36542 * 131.43228 * 180.02562 * 15 14 13 25 25 C 1.53774 * 113.61335 * 167.32320 * 9 7 2 26 26 C 1.53962 * 87.01776 * 220.04989 * 25 9 7 27 27 C 1.53774 * 87.11052 * 25.36159 * 26 25 9 28 28 H 0.96993 * 120.00091 * 175.07221 * 1 2 3 29 29 H 1.08004 * 120.04777 * 359.95463 * 14 13 11 30 30 H 1.08005 * 120.00173 * 180.30856 * 21 17 16 31 31 H 1.09002 * 110.56613 * 91.32844 * 23 22 16 32 32 H 1.08996 * 110.56403 * 214.18193 * 23 22 16 33 33 H 1.08996 * 113.61592 * 334.56198 * 25 9 7 34 34 H 1.08995 * 113.61578 * 105.47683 * 25 9 7 35 35 H 1.09003 * 113.53145 * 270.81277 * 26 25 9 36 36 H 1.08991 * 113.74438 * 139.94685 * 26 25 9 37 37 H 1.09003 * 113.61596 * 220.08952 * 27 26 25 38 38 H 1.09004 * 113.68846 * 89.20399 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0841 -1.1942 0.0295 9 6 1.2516 -2.4989 -0.0394 10 8 0.3852 -2.6852 1.1108 11 6 0.9817 -2.8028 2.3133 12 8 2.1886 -2.6967 2.4059 13 6 0.1697 -3.0604 3.5172 14 6 0.7867 -3.1832 4.7658 15 6 0.0228 -3.4238 5.8904 16 6 -1.3636 -3.5446 5.7793 17 6 -1.9751 -3.4235 4.5388 18 7 -3.4454 -3.5517 4.4256 19 8 -3.9841 -3.4454 3.3384 20 8 -4.1166 -3.7626 5.4199 21 6 -1.2187 -3.1779 3.4137 22 8 -1.8801 -3.7783 7.0193 23 6 -0.8480 -3.3925 7.9459 24 8 0.3698 -3.5820 7.2014 25 6 2.1423 -3.7150 -0.3431 26 6 0.9941 -4.2338 -1.2278 27 6 0.5563 -2.7680 -1.3843 28 1 -0.4850 -0.8369 -0.0722 29 1 1.8594 -3.0903 4.8504 30 1 -1.6987 -3.0794 2.4512 31 1 -0.9625 -2.3472 8.2331 32 1 -0.8631 -4.0360 8.8255 33 1 3.0451 -3.4665 -0.9010 34 1 2.3401 -4.3397 0.5278 35 1 0.2737 -4.8495 -0.6891 36 1 1.3294 -4.6911 -2.1586 37 1 -0.5244 -2.6293 -1.3527 38 1 1.0239 -2.2589 -2.2272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:45 Heat of formation + Delta-G solvation = -88.801124 kcal Electronic energy + Delta-G solvation = -29375.999218 eV Core-core repulsion = 24961.735838 eV Total energy + Delta-G solvation = -4414.263380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.99467 -41.96190 -40.02117 -38.45530 -37.01980 -36.95634 -36.47711 -34.55764 -32.54210 -32.00595 -30.89172 -26.80041 -26.54021 -26.12280 -24.93947 -24.56810 -23.23347 -22.59348 -21.27722 -19.52615 -19.05495 -18.71897 -18.34629 -18.03497 -17.55600 -17.49597 -17.07076 -16.75722 -15.80713 -15.56054 -15.10913 -14.92826 -14.65219 -14.10578 -13.83977 -13.76726 -13.58254 -13.45863 -13.30558 -12.55944 -12.47544 -12.25148 -11.60903 -11.55425 -11.47332 -11.20643 -11.10361 -10.95266 -10.71025 -10.55538 -10.34473 -10.27662 -10.12889 -9.86684 -9.80953 -9.21651 -8.76595 -8.60320 -8.31073 -6.51149 -4.31523 -0.38140 0.21970 1.10979 1.21323 1.95608 2.49037 2.65873 3.28568 3.36686 3.41286 3.53094 3.56317 3.67233 4.06412 4.20856 4.36230 4.40013 4.56153 4.58416 4.87365 4.94526 5.15934 5.18690 5.40569 5.44047 5.55511 5.61987 5.68625 5.83616 6.13910 6.16380 6.22891 6.40346 6.53964 6.58273 6.73654 6.96605 7.15235 7.39877 7.62311 7.92420 8.25315 8.60872 8.71456 9.44395 10.86321 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.012936 B = 0.003950 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.981177 B = 7086.604905 C = 7474.184707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.033 3.967 3 Si 1.063 2.937 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.061 0.939 9 C 0.210 3.790 10 O -0.345 6.345 11 C 0.513 3.487 12 O -0.482 6.482 13 C -0.094 4.094 14 C 0.002 3.998 15 C 0.024 3.976 16 C 0.120 3.880 17 C -0.040 4.040 18 N 0.033 4.967 19 O -0.148 6.148 20 O -0.150 6.150 21 C 0.005 3.995 22 O -0.276 6.276 23 C 0.207 3.793 24 O -0.293 6.293 25 C -0.144 4.144 26 C -0.150 4.150 27 C -0.108 4.108 28 H 0.280 0.720 29 H 0.170 0.830 30 H 0.184 0.816 31 H 0.097 0.903 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -7.438 11.490 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.176 4.176 3 Si 0.891 3.109 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.631 4.631 8 H 0.079 0.921 9 C 0.177 3.823 10 O -0.262 6.262 11 C 0.355 3.645 12 O -0.370 6.370 13 C -0.096 4.096 14 C -0.016 4.016 15 C -0.022 4.022 16 C 0.072 3.928 17 C -0.124 4.124 18 N 0.553 4.447 19 O -0.365 6.365 20 O -0.366 6.366 21 C -0.014 4.014 22 O -0.190 6.190 23 C 0.096 3.904 24 O -0.209 6.209 25 C -0.182 4.182 26 C -0.187 4.187 27 C -0.146 4.146 28 H 0.092 0.908 29 H 0.187 0.813 30 H 0.201 0.799 31 H 0.114 0.886 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.587 -5.839 11.784 13.165 hybrid contribution -0.109 -1.617 0.317 1.652 sum -0.696 -7.457 12.102 14.232 Atomic orbital electron populations 1.70721 1.06764 1.32134 1.42519 1.25879 0.96485 1.02639 0.92610 0.83623 0.75102 0.75304 0.76871 1.20615 1.21331 1.21050 1.22038 0.94528 0.90207 1.56363 0.92064 1.21034 0.87033 0.94237 0.80031 1.86471 1.43950 1.80657 1.15074 1.19917 0.86020 0.74998 0.83562 1.90808 1.14684 1.44665 1.86814 1.19243 0.91908 1.05462 0.93015 1.20486 1.02396 0.91664 0.87098 1.19206 0.90038 1.06125 0.86786 1.19464 0.91457 0.95481 0.86429 1.20027 0.81111 1.18729 0.92519 1.43293 1.02584 0.98053 1.00743 1.94595 1.73292 1.53639 1.14932 1.94571 1.62787 1.51343 1.27944 1.21290 0.92693 0.89142 0.98237 1.87577 1.39484 1.79878 1.12073 1.25946 0.70198 1.03078 0.91160 1.87482 1.32342 1.87965 1.13118 1.23368 0.97715 0.98202 0.98890 1.23006 0.98912 0.97320 0.99468 1.22967 1.00280 0.94066 0.97297 0.90807 0.81276 0.79880 0.88590 0.83814 0.89744 0.92821 0.91134 0.92410 0.92043 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.78 13.51 55.43 0.75 -24.03 16 2 C 0.03 0.87 5.40 -17.82 -0.10 0.77 16 3 Si 1.06 24.13 29.90 -169.99 -5.08 19.05 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.59 -15.67 7.35 -34.44 -0.25 -15.92 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.21 4.88 0.11 -90.96 -0.01 4.87 16 10 O -0.34 -7.74 8.34 -40.61 -0.34 -8.08 16 11 C 0.51 10.68 7.27 34.49 0.25 10.93 16 12 O -0.48 -11.03 14.49 -19.28 -0.28 -11.30 16 13 C -0.09 -1.54 5.87 -104.99 -0.62 -2.15 16 14 C 0.00 0.03 9.60 -39.06 -0.38 -0.34 16 15 C 0.02 0.30 7.14 -39.13 -0.28 0.02 16 16 C 0.12 1.62 6.76 -38.85 -0.26 1.36 16 17 C -0.04 -0.60 6.85 -79.89 -0.55 -1.15 16 18 N 0.03 0.53 4.45 33.99 0.15 0.68 16 19 O -0.15 -2.51 18.43 -29.46 -0.54 -3.06 16 20 O -0.15 -2.47 18.04 -34.59 -0.62 -3.09 16 21 C 0.01 0.09 9.11 -39.19 -0.36 -0.27 16 22 O -0.28 -3.28 10.50 -50.74 -0.53 -3.82 16 23 C 0.21 1.60 8.88 101.05 0.90 2.50 16 24 O -0.29 -3.14 11.41 -45.82 -0.52 -3.67 16 25 C -0.14 -2.94 6.91 -25.83 -0.18 -3.11 16 26 C -0.15 -2.67 8.03 -25.83 -0.21 -2.88 16 27 C -0.11 -2.26 6.66 -25.92 -0.17 -2.43 16 28 H 0.28 7.72 5.76 -40.82 -0.24 7.49 16 29 H 0.17 2.19 7.64 -52.48 -0.40 1.79 16 30 H 0.18 2.89 7.13 -52.48 -0.37 2.52 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.14 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 34 H 0.05 1.08 7.32 -51.93 -0.38 0.70 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.28 7.77 -51.93 -0.40 0.88 16 38 H 0.09 1.91 8.09 -51.93 -0.42 1.49 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -31.15 338.56 -7.66 -38.81 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.53 Total: 1.20 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.21 Total: -7.80 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.90 Total: -23.35 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -2.84 Total: -33.01 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.15 -7.66 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.993 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds