Wall clock time and date at job start Tue Mar 31 2020 19:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47173 * 2 1 4 4 C 1.50701 * 109.47022 * 119.99869 * 2 1 3 5 5 O 1.21307 * 119.99636 * 95.27269 * 4 2 1 6 6 N 1.34774 * 120.00475 * 275.27130 * 4 2 1 7 7 C 1.40595 * 120.00367 * 180.02562 * 6 4 2 8 8 C 1.40650 * 126.07958 * 359.95923 * 7 6 4 9 9 N 1.30904 * 108.38426 * 180.02562 * 8 7 6 10 10 N 1.40073 * 108.40911 * 0.02562 * 9 8 7 11 11 C 1.37319 * 126.06978 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99964 * 180.02562 * 11 10 9 13 13 C 1.38985 * 120.00063 * 0.03449 * 11 10 9 14 14 N 1.31296 * 120.00303 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00282 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47113 * 59.98949 * 15 13 11 17 17 H 1.48497 * 109.47430 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46802 * 299.99495 * 15 13 11 19 19 C 1.35682 * 126.08172 * 180.02562 * 7 6 4 20 20 C 1.50697 * 109.46761 * 239.99934 * 2 1 3 21 21 C 1.38247 * 119.98634 * 127.28159 * 20 2 1 22 22 C 1.38215 * 120.01316 * 179.72444 * 21 20 2 23 23 C 1.38348 * 119.98294 * 0.54389 * 22 21 20 24 24 Cl 1.73602 * 120.01019 * 179.70418 * 23 22 21 25 25 C 1.38347 * 119.98071 * 359.72692 * 23 22 21 26 26 C 1.38223 * 119.98270 * 0.02562 * 25 23 22 27 27 H 1.09008 * 109.46850 * 300.00272 * 1 2 3 28 28 H 1.08996 * 109.47408 * 59.99898 * 1 2 3 29 29 H 1.08996 * 109.47312 * 180.02562 * 1 2 3 30 30 H 0.96701 * 114.00308 * 179.97438 * 3 2 1 31 31 H 0.97006 * 119.99735 * 0.02562 * 6 4 2 32 32 H 1.07995 * 125.80543 * 0.07151 * 8 7 6 33 33 H 0.96999 * 120.00542 * 180.02562 * 14 13 11 34 34 H 1.07998 * 126.24277 * 0.22588 * 19 7 6 35 35 H 1.07996 * 119.98947 * 359.97438 * 21 20 2 36 36 H 1.07991 * 120.00272 * 180.27381 * 22 21 20 37 37 H 1.07999 * 120.01436 * 180.02562 * 25 23 22 38 38 H 1.08002 * 119.99113 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3255 -1.8862 1.1748 6 7 2.1558 -0.0395 2.3928 7 6 2.6250 -0.7021 3.5406 8 6 2.9993 -2.0555 3.6209 9 7 3.3806 -2.3063 4.8478 10 7 3.2649 -1.1282 5.5966 11 6 3.5689 -0.9832 6.9278 12 1 3.4416 -0.0250 7.4096 13 6 4.0406 -2.0695 7.6553 14 7 4.1951 -3.2345 7.0698 15 14 4.4549 -1.8721 9.4661 16 1 3.2418 -1.4432 10.2075 17 1 4.9335 -3.1689 10.0086 18 1 5.5183 -0.8472 9.6216 19 6 2.7960 -0.1501 4.7682 20 6 2.0322 -0.7104 -1.2305 21 6 2.9463 -0.0902 -2.0617 22 6 3.4117 -0.7435 -3.1873 23 6 2.9539 -2.0139 -3.4881 24 17 3.5321 -2.8321 -4.9059 25 6 2.0349 -2.6320 -2.6590 26 6 1.5741 -1.9796 -1.5308 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.9703 1.4236 0.0004 31 1 1.9211 0.9007 2.4374 32 1 2.9767 -2.7665 2.8084 33 1 4.5240 -3.9927 7.5776 34 1 2.5935 0.8751 5.0411 35 1 3.2999 0.9034 -1.8292 36 1 4.1291 -0.2606 -3.8341 37 1 1.6775 -3.6239 -2.8931 38 1 0.8564 -2.4618 -0.8837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815152550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:59 Heat of formation + Delta-G solvation = 22.829021 kcal Electronic energy + Delta-G solvation = -25634.208603 eV Core-core repulsion = 21697.787785 eV Total energy + Delta-G solvation = -3936.420818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.74542 -39.60163 -38.52126 -36.99798 -36.38292 -34.29409 -33.14087 -32.42955 -31.12197 -30.28313 -29.45707 -27.79090 -25.24634 -24.31708 -22.92756 -22.25579 -20.94753 -20.06565 -19.46615 -18.48713 -17.55933 -17.17647 -16.23898 -15.80886 -15.48808 -15.09807 -14.88058 -14.80815 -14.47091 -13.81077 -13.78970 -13.60284 -13.51908 -12.97427 -12.96285 -12.87810 -12.45012 -12.27193 -11.98437 -11.72038 -11.67652 -11.51253 -11.41274 -11.26565 -11.02248 -10.97672 -10.81915 -10.58024 -10.19757 -9.24590 -9.19350 -9.07062 -8.85075 -8.71610 -8.09759 -6.74476 -6.58330 -4.25959 0.91801 1.16020 1.94809 2.66674 2.99296 3.02810 3.07210 3.26236 3.60659 3.64583 3.84521 3.88929 4.31753 4.40635 4.57854 4.65698 4.71273 4.94246 4.99809 5.08337 5.17692 5.28462 5.45171 5.53472 5.58572 5.77812 5.88727 6.01384 6.08198 6.21241 6.31461 6.40922 6.60083 6.84105 6.91232 7.03123 7.19409 7.22804 7.82533 8.11955 8.24075 8.57270 8.77462 9.34327 9.63411 10.37514 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.002444 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.480006 B =11454.291926 C =12233.227726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 O -0.546 6.546 4 C 0.474 3.526 5 O -0.523 6.523 6 N -0.611 5.611 7 C -0.063 4.063 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.141 5.141 11 C -0.323 4.323 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.770 5.770 15 Si 0.935 3.065 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.267 1.267 19 C -0.083 4.083 20 C -0.095 4.095 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.032 4.032 24 Cl -0.077 7.077 25 C -0.112 4.112 26 C -0.063 4.063 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.383 0.617 31 H 0.402 0.598 32 H 0.175 0.825 33 H 0.276 0.724 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 7.229 -17.147 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.121 3.879 3 O -0.352 6.352 4 C 0.257 3.743 5 O -0.400 6.400 6 N -0.253 5.253 7 C -0.169 4.169 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.092 4.908 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.234 4.234 20 C -0.096 4.096 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.058 4.058 24 Cl -0.048 7.048 25 C -0.131 4.131 26 C -0.082 4.082 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.232 0.768 31 H 0.236 0.764 32 H 0.192 0.808 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.550 5.309 -16.447 17.872 hybrid contribution 0.481 1.043 0.150 1.159 sum -4.068 6.352 -16.297 17.958 Atomic orbital electron populations 1.21781 0.89696 1.03647 1.04019 1.20170 0.96512 0.81433 0.89759 1.86560 1.27572 1.24383 1.96726 1.20778 0.80823 0.88013 0.84649 1.90632 1.49336 1.15702 1.84338 1.42461 1.62371 1.12966 1.07522 1.17285 1.19174 0.93974 0.86457 1.24097 1.05652 0.94387 0.96634 1.78265 1.25029 1.04315 1.01558 1.44551 1.34588 1.04757 1.06943 1.19834 1.45580 0.98899 0.81246 0.86633 1.25645 0.95772 0.94623 1.01063 1.70203 1.32762 1.00123 1.36508 0.85893 0.79414 0.78431 0.80409 1.19138 1.20119 1.19138 1.21271 1.15828 0.95648 0.90631 1.20100 0.97953 0.95516 0.96045 1.20856 0.96458 1.00110 0.94056 1.20936 1.00776 0.93364 0.98174 1.20963 0.99560 0.94406 0.90890 1.98365 1.88069 1.79067 1.39273 1.21048 0.97088 1.00514 0.94426 1.20946 0.98911 0.93302 0.95017 0.90710 0.90559 0.90120 0.76791 0.76411 0.80804 0.91373 0.83672 0.84777 0.84917 0.84792 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.55 37.16 0.32 -1.07 16 2 C 0.17 1.98 1.15 -92.93 -0.11 1.87 16 3 O -0.55 -5.50 11.51 -35.23 -0.41 -5.90 16 4 C 0.47 7.74 6.65 -10.99 -0.07 7.67 16 5 O -0.52 -10.45 12.35 5.53 0.07 -10.38 16 6 N -0.61 -10.44 5.38 -10.00 -0.05 -10.49 16 7 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 8 C -0.03 -0.83 10.85 -17.04 -0.18 -1.02 16 9 N -0.26 -7.51 10.40 30.80 0.32 -7.19 16 10 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 11 C -0.32 -8.47 10.25 -14.82 -0.15 -8.62 16 12 H 0.12 2.69 7.83 -52.48 -0.41 2.28 16 13 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 14 N -0.77 -21.37 11.81 55.49 0.66 -20.72 16 15 Si 0.93 18.75 29.55 -169.99 -5.02 13.72 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 19 C -0.08 -1.92 11.49 -16.39 -0.19 -2.10 16 20 C -0.10 -1.13 4.56 -104.62 -0.48 -1.61 16 21 C -0.10 -1.00 9.24 -39.59 -0.37 -1.37 16 22 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 23 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -0.78 28.96 -51.86 -1.50 -2.29 16 25 C -0.11 -1.27 9.83 -39.55 -0.39 -1.66 16 26 C -0.06 -0.77 8.00 -39.59 -0.32 -1.09 16 27 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.81 7.00 -51.93 -0.36 0.45 16 30 H 0.38 2.99 7.76 45.56 0.35 3.34 16 31 H 0.40 5.57 8.27 -40.82 -0.34 5.23 16 32 H 0.18 4.47 5.92 -52.49 -0.31 4.15 16 33 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 35 H 0.13 1.07 6.44 -52.49 -0.34 0.73 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 1.63 6.97 -52.49 -0.37 1.26 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -32.96 343.10 -7.08 -40.04 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -3.02 Total: 13.98 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.25 Total: -12.07 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.88 Total: -42.27 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.34 Total: -16.29 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.72 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.96 -7.08 -40.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815152550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.871 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds