Wall clock time and date at job start Tue Mar 31 2020 19:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42893 * 109.47173 * 2 1 4 4 C 1.50701 * 109.47022 * 119.99869 * 2 1 3 5 5 O 1.21307 * 119.99636 * 95.27269 * 4 2 1 6 6 N 1.34774 * 120.00475 * 275.27130 * 4 2 1 7 7 C 1.40595 * 120.00367 * 180.02562 * 6 4 2 8 8 C 1.40650 * 126.07958 * 359.95923 * 7 6 4 9 9 N 1.30904 * 108.38426 * 180.02562 * 8 7 6 10 10 N 1.40073 * 108.40911 * 0.02562 * 9 8 7 11 11 C 1.37319 * 126.06978 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99964 * 180.02562 * 11 10 9 13 13 C 1.38985 * 120.00063 * 0.03449 * 11 10 9 14 14 N 1.31296 * 120.00303 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00282 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47113 * 59.98949 * 15 13 11 17 17 H 1.48497 * 109.47430 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46802 * 299.99495 * 15 13 11 19 19 C 1.35682 * 126.08172 * 180.02562 * 7 6 4 20 20 C 1.50697 * 109.46761 * 239.99934 * 2 1 3 21 21 C 1.38247 * 119.98634 * 127.28159 * 20 2 1 22 22 C 1.38215 * 120.01316 * 179.72444 * 21 20 2 23 23 C 1.38348 * 119.98294 * 0.54389 * 22 21 20 24 24 Cl 1.73602 * 120.01019 * 179.70418 * 23 22 21 25 25 C 1.38347 * 119.98071 * 359.72692 * 23 22 21 26 26 C 1.38223 * 119.98270 * 0.02562 * 25 23 22 27 27 H 1.09008 * 109.46850 * 300.00272 * 1 2 3 28 28 H 1.08996 * 109.47408 * 59.99898 * 1 2 3 29 29 H 1.08996 * 109.47312 * 180.02562 * 1 2 3 30 30 H 0.96701 * 114.00308 * 179.97438 * 3 2 1 31 31 H 0.97006 * 119.99735 * 0.02562 * 6 4 2 32 32 H 1.07995 * 125.80543 * 0.07151 * 8 7 6 33 33 H 0.96999 * 120.00542 * 180.02562 * 14 13 11 34 34 H 1.07998 * 126.24277 * 0.22588 * 19 7 6 35 35 H 1.07996 * 119.98947 * 359.97438 * 21 20 2 36 36 H 1.07991 * 120.00272 * 180.27381 * 22 21 20 37 37 H 1.07999 * 120.01436 * 180.02562 * 25 23 22 38 38 H 1.08002 * 119.99113 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3255 -1.8862 1.1748 6 7 2.1558 -0.0395 2.3928 7 6 2.6250 -0.7021 3.5406 8 6 2.9993 -2.0555 3.6209 9 7 3.3806 -2.3063 4.8478 10 7 3.2649 -1.1282 5.5966 11 6 3.5689 -0.9832 6.9278 12 1 3.4416 -0.0250 7.4096 13 6 4.0406 -2.0695 7.6553 14 7 4.1951 -3.2345 7.0698 15 14 4.4549 -1.8721 9.4661 16 1 3.2418 -1.4432 10.2075 17 1 4.9335 -3.1689 10.0086 18 1 5.5183 -0.8472 9.6216 19 6 2.7960 -0.1501 4.7682 20 6 2.0322 -0.7104 -1.2305 21 6 2.9463 -0.0902 -2.0617 22 6 3.4117 -0.7435 -3.1873 23 6 2.9539 -2.0139 -3.4881 24 17 3.5321 -2.8321 -4.9059 25 6 2.0349 -2.6320 -2.6590 26 6 1.5741 -1.9796 -1.5308 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.9703 1.4236 0.0004 31 1 1.9211 0.9007 2.4374 32 1 2.9767 -2.7665 2.8084 33 1 4.5240 -3.9927 7.5776 34 1 2.5935 0.8751 5.0411 35 1 3.2999 0.9034 -1.8292 36 1 4.1291 -0.2606 -3.8341 37 1 1.6775 -3.6239 -2.8931 38 1 0.8564 -2.4618 -0.8837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815152550.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:58 Heat of formation + Delta-G solvation = 0.056394 kcal Electronic energy + Delta-G solvation = -25635.196098 eV Core-core repulsion = 21697.787785 eV Total energy + Delta-G solvation = -3937.408313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00734 -41.19491 -39.72070 -38.00905 -37.24348 -35.94199 -34.90331 -33.32810 -32.23089 -31.95525 -30.42416 -29.49806 -26.97716 -25.49003 -23.78519 -23.42742 -22.75922 -21.39059 -21.06724 -19.69226 -18.94561 -18.47671 -17.43601 -17.22065 -16.83316 -16.48489 -16.13613 -16.04957 -15.59344 -15.27428 -15.18507 -14.80852 -14.60783 -14.45199 -14.24907 -13.73835 -13.50052 -13.35237 -13.27289 -13.15555 -12.88462 -12.87030 -12.77673 -12.50203 -12.38019 -12.14159 -11.87390 -11.82158 -11.70577 -10.99935 -10.81966 -10.46408 -10.10306 -9.99548 -9.63090 -8.53487 -8.46834 -6.24201 0.03947 0.32262 1.11157 1.17828 1.39941 1.47567 1.56228 1.85193 1.99889 2.21830 2.49853 2.64743 2.91086 3.02929 3.09311 3.42812 3.73784 3.80941 3.92476 4.07280 4.34814 4.43729 4.46443 4.59234 4.63717 4.73666 4.77872 4.96522 5.00119 5.06680 5.10179 5.18723 5.23057 5.29514 5.45557 5.46323 5.76653 5.95649 6.28854 6.41871 6.73818 6.75677 7.33610 7.46418 7.68346 8.52245 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.002444 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.480006 B =11454.291926 C =12233.227726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.186 3.814 3 O -0.537 6.537 4 C 0.474 3.526 5 O -0.560 6.560 6 N -0.605 5.605 7 C -0.045 4.045 8 C -0.058 4.058 9 N -0.311 5.311 10 N -0.167 5.167 11 C -0.354 4.354 12 H 0.141 0.859 13 C -0.007 4.007 14 N -0.825 5.825 15 Si 1.018 2.982 16 H -0.253 1.253 17 H -0.279 1.279 18 H -0.253 1.253 19 C -0.080 4.080 20 C -0.111 4.111 21 C -0.095 4.095 22 C -0.115 4.115 23 C -0.041 4.041 24 Cl -0.071 7.071 25 C -0.122 4.122 26 C -0.078 4.078 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.395 0.605 31 H 0.421 0.579 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.187 0.813 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 10.051 -17.544 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.141 3.859 3 O -0.345 6.345 4 C 0.260 3.740 5 O -0.438 6.438 6 N -0.250 5.250 7 C -0.151 4.151 8 C -0.233 4.233 9 N -0.143 5.143 10 N 0.064 4.936 11 C -0.485 4.485 12 H 0.158 0.842 13 C -0.218 4.218 14 N -0.453 5.453 15 Si 0.837 3.163 16 H -0.177 1.177 17 H -0.204 1.204 18 H -0.177 1.177 19 C -0.231 4.231 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.134 4.134 23 C -0.067 4.067 24 Cl -0.042 7.042 25 C -0.141 4.141 26 C -0.096 4.096 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.258 0.742 32 H 0.184 0.816 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.767 8.188 -16.886 19.362 hybrid contribution 0.512 0.207 0.057 0.555 sum -4.256 8.395 -16.828 19.282 Atomic orbital electron populations 1.21844 0.88375 1.03916 1.05185 1.19898 0.97266 0.81636 0.87092 1.86571 1.28841 1.22690 1.96431 1.21774 0.79066 0.87712 0.85466 1.90624 1.50371 1.17755 1.85039 1.42429 1.62480 1.13774 1.06282 1.17333 1.16951 0.92748 0.88050 1.24151 1.06980 0.96189 0.96010 1.78156 1.26782 1.06462 1.02898 1.44827 1.36059 1.05029 1.07715 1.20574 1.46167 1.00335 0.81446 0.84176 1.26872 0.94840 0.93814 1.06289 1.70390 1.34780 1.01339 1.38779 0.84664 0.79705 0.78390 0.73529 1.17715 1.20390 1.17707 1.22010 1.14043 0.96787 0.90214 1.20203 0.98901 0.95652 0.96451 1.21174 0.95458 1.01138 0.93526 1.21248 1.00762 0.93010 0.98371 1.21142 0.99560 0.94941 0.91081 1.98365 1.87946 1.79061 1.38872 1.21190 0.97406 1.01048 0.94436 1.21009 0.99381 0.93852 0.95402 0.90273 0.88628 0.90433 0.75398 0.74164 0.81593 0.91430 0.79599 0.82098 0.82754 0.83979 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.55 71.98 0.62 -1.91 16 2 C 0.19 4.05 1.15 -12.29 -0.01 4.03 16 3 O -0.54 -8.98 11.51 -148.98 -1.71 -10.70 16 4 C 0.47 15.03 6.65 87.66 0.58 15.62 16 5 O -0.56 -22.66 12.35 -3.11 -0.04 -22.70 16 6 N -0.60 -19.71 5.38 -303.92 -1.63 -21.34 16 7 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 8 C -0.06 -3.11 10.85 85.42 0.93 -2.19 16 9 N -0.31 -18.63 10.40 -56.47 -0.59 -19.21 16 10 N -0.17 -9.20 3.74 -190.02 -0.71 -9.91 16 11 C -0.35 -18.60 10.25 84.01 0.86 -17.74 16 12 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 13 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 14 N -0.82 -47.57 11.81 21.66 0.26 -47.31 16 15 Si 1.02 38.31 29.55 68.60 2.03 40.34 16 16 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 17 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 19 C -0.08 -3.64 11.49 83.38 0.96 -2.68 16 20 C -0.11 -2.47 4.56 -19.86 -0.09 -2.56 16 21 C -0.10 -1.73 9.24 22.27 0.21 -1.53 16 22 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 23 C -0.04 -0.85 6.32 22.32 0.14 -0.71 16 24 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 25 C -0.12 -2.72 9.83 22.29 0.22 -2.50 16 26 C -0.08 -1.87 8.00 22.27 0.18 -1.69 16 27 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.49 7.00 -2.39 -0.02 1.47 16 30 H 0.39 4.70 7.76 -74.06 -0.57 4.13 16 31 H 0.42 10.45 8.27 -92.70 -0.77 9.69 16 32 H 0.17 8.99 5.92 -2.91 -0.02 8.98 16 33 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.19 6.63 8.06 -2.91 -0.02 6.60 16 35 H 0.16 1.96 6.44 -2.91 -0.02 1.94 16 36 H 0.15 2.10 8.06 -2.92 -0.02 2.07 16 37 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.13 3.18 6.97 -2.91 -0.02 3.15 16 Total: -1.00 -74.79 343.10 2.86 -71.93 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.20 Total: 37.71 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 5.53 Total: -17.35 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -2.68 Total: -97.78 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.75 Total: -33.39 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -74.79 2.86 -71.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815152550.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.990 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds