Wall clock time and date at job start Tue Mar 31 2020 19:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46979 * 2 1 4 4 C 1.50696 * 109.47169 * 240.00063 * 2 1 3 5 5 O 1.21303 * 120.00518 * 265.10962 * 4 2 1 6 6 N 1.34782 * 119.99981 * 85.10856 * 4 2 1 7 7 C 1.40598 * 120.00059 * 179.97438 * 6 4 2 8 8 C 1.40647 * 126.08170 * 359.97438 * 7 6 4 9 9 N 1.30906 * 108.38566 * 179.77704 * 8 7 6 10 10 N 1.40068 * 108.40669 * 0.37620 * 9 8 7 11 11 C 1.37326 * 126.06487 * 179.88050 * 10 9 8 12 12 H 1.08002 * 119.99158 * 179.69431 * 11 10 9 13 13 C 1.38982 * 120.00437 * 359.41358 * 11 10 9 14 14 N 1.31291 * 119.99918 * 0.27903 * 13 11 10 15 15 Si 1.86801 * 120.00028 * 180.27197 * 13 11 10 16 16 H 1.48499 * 109.46945 * 60.00575 * 15 13 11 17 17 H 1.48502 * 109.47046 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47457 * 300.00365 * 15 13 11 19 19 C 1.35674 * 126.08258 * 179.97438 * 7 6 4 20 20 C 1.50698 * 109.47169 * 120.00109 * 2 1 3 21 21 C 1.38242 * 119.98702 * 52.09231 * 20 2 1 22 22 C 1.38216 * 120.01273 * 179.72849 * 21 20 2 23 23 C 1.38354 * 119.98283 * 0.54280 * 22 21 20 24 24 Cl 1.73605 * 120.00982 * 179.70595 * 23 22 21 25 25 C 1.38345 * 119.97936 * 359.73011 * 23 22 21 26 26 C 1.38217 * 119.98276 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47174 * 299.99376 * 1 2 3 29 29 H 1.09000 * 109.47194 * 59.99947 * 1 2 3 30 30 H 0.96693 * 114.00311 * 179.97438 * 3 2 1 31 31 H 0.97002 * 119.99669 * 0.02562 * 6 4 2 32 32 H 1.08003 * 125.80869 * 0.02562 * 8 7 6 33 33 H 0.96999 * 120.00375 * 179.97438 * 14 13 11 34 34 H 1.08009 * 126.24335 * 0.02562 * 19 7 6 35 35 H 1.07999 * 119.99393 * 359.97438 * 21 20 2 36 36 H 1.08001 * 120.00981 * 180.26758 * 22 21 20 37 37 H 1.07994 * 120.01317 * 179.97438 * 25 23 22 38 38 H 1.08001 * 119.99253 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3190 -1.8878 -1.1766 6 7 2.1631 -0.0374 -2.3909 7 6 2.6323 -0.7001 -3.5388 8 6 3.0008 -2.0549 -3.6206 9 7 3.3802 -2.3062 -4.8480 10 7 3.2777 -1.1247 -5.5933 11 6 3.5868 -0.9784 -6.9233 12 1 3.4656 -0.0186 -7.4033 13 6 4.0611 -2.0640 -7.6501 14 7 4.2084 -3.2308 -7.0664 15 14 4.4887 -1.8630 -9.4573 16 1 5.5556 -0.8403 -9.6027 17 1 4.9681 -3.1596 -9.9997 18 1 3.2820 -1.4294 -10.2063 19 6 2.8101 -0.1463 -4.7645 20 6 2.0323 -0.7104 1.2304 21 6 1.5691 -1.9769 1.5346 22 6 2.0337 -2.6312 2.6599 23 6 2.9541 -2.0139 3.4881 24 17 3.5323 -2.8321 4.9059 25 6 3.4131 -0.7442 3.1863 26 6 2.9524 -0.0933 2.0574 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9702 1.4237 0.0004 31 1 1.9343 0.9042 -2.4339 32 1 2.9716 -2.7678 -2.8098 33 1 4.5391 -3.9885 -7.5737 34 1 2.6177 0.8816 -5.0348 35 1 0.8470 -2.4567 0.8906 36 1 1.6750 -3.6224 2.8951 37 1 4.1312 -0.2616 3.8326 38 1 3.3109 0.8977 1.8214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815152551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:03 Heat of formation + Delta-G solvation = 22.858611 kcal Electronic energy + Delta-G solvation = -25634.386407 eV Core-core repulsion = 21697.966872 eV Total energy + Delta-G solvation = -3936.419535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74600 -39.60238 -38.52216 -36.99877 -36.38357 -34.29399 -33.14082 -32.43100 -31.12303 -30.28235 -29.45699 -27.79207 -25.24728 -24.31821 -22.92675 -22.25685 -20.94706 -20.06548 -19.46575 -18.48954 -17.56114 -17.17659 -16.23909 -15.81154 -15.48783 -15.09884 -14.88072 -14.80610 -14.47148 -13.81054 -13.79261 -13.60083 -13.52038 -12.97481 -12.96250 -12.87921 -12.44785 -12.27140 -11.98556 -11.72084 -11.67718 -11.51373 -11.41328 -11.26576 -11.02314 -10.97610 -10.82022 -10.57990 -10.19745 -9.24663 -9.19370 -9.07282 -8.85075 -8.71622 -8.09710 -6.74482 -6.58316 -4.25950 0.91683 1.15894 1.94708 2.66731 2.99328 3.02828 3.07213 3.26200 3.60676 3.64533 3.84526 3.88809 4.31699 4.40683 4.57718 4.65691 4.71128 4.94084 4.99831 5.08382 5.17515 5.28374 5.45087 5.53476 5.58550 5.77647 5.88713 6.01288 6.08126 6.21205 6.31320 6.40955 6.59932 6.84095 6.91259 7.03148 7.19438 7.22756 7.82580 8.11971 8.24093 8.57289 8.77483 9.34343 9.63445 10.37550 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002445 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.415493 B =11449.828310 C =12227.046391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 O -0.546 6.546 4 C 0.474 3.526 5 O -0.523 6.523 6 N -0.611 5.611 7 C -0.063 4.063 8 C -0.032 4.032 9 N -0.261 5.261 10 N -0.141 5.141 11 C -0.323 4.323 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.770 5.770 15 Si 0.935 3.065 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.267 1.267 19 C -0.083 4.083 20 C -0.095 4.095 21 C -0.064 4.064 22 C -0.112 4.112 23 C -0.032 4.032 24 Cl -0.077 7.077 25 C -0.114 4.114 26 C -0.097 4.097 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.383 0.617 31 H 0.402 0.598 32 H 0.175 0.825 33 H 0.276 0.724 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 7.231 17.157 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.121 3.879 3 O -0.352 6.352 4 C 0.257 3.743 5 O -0.400 6.400 6 N -0.253 5.253 7 C -0.169 4.169 8 C -0.208 4.208 9 N -0.092 5.092 10 N 0.092 4.908 11 C -0.456 4.456 12 H 0.134 0.866 13 C -0.171 4.171 14 N -0.396 5.396 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.191 1.191 19 C -0.234 4.234 20 C -0.096 4.096 21 C -0.082 4.082 22 C -0.131 4.131 23 C -0.058 4.058 24 Cl -0.048 7.048 25 C -0.132 4.132 26 C -0.115 4.115 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.232 0.768 31 H 0.236 0.764 32 H 0.192 0.808 33 H 0.086 0.914 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.546 5.308 16.454 17.877 hybrid contribution 0.499 1.048 -0.145 1.170 sum -4.047 6.356 16.309 17.966 Atomic orbital electron populations 1.21779 0.89689 1.03650 1.04019 1.20172 0.96519 0.81426 0.89758 1.86560 1.27568 1.24390 1.96729 1.20777 0.80802 0.88028 0.84649 1.90631 1.49481 1.15603 1.84287 1.42464 1.62445 1.12790 1.07637 1.17282 1.19163 0.93951 0.86485 1.24098 1.05700 0.94365 0.96612 1.78264 1.25133 1.04127 1.01644 1.44552 1.34626 1.04619 1.07045 1.19834 1.45463 0.98825 0.81439 0.86635 1.25643 0.95783 0.94628 1.01050 1.70202 1.32813 1.00076 1.36504 0.85892 0.79416 0.78430 0.80403 1.19142 1.20119 1.19136 1.21270 1.15802 0.95595 0.90710 1.20100 0.97885 0.95559 0.96061 1.20945 0.98924 0.93289 0.95041 1.21048 0.97043 1.00499 0.94470 1.20965 0.99576 0.94396 0.90887 1.98365 1.88070 1.79061 1.39274 1.20936 1.00797 0.93391 0.98117 1.20855 0.96458 1.00126 0.94046 0.90116 0.90558 0.90708 0.76798 0.76410 0.80806 0.91373 0.83673 0.84559 0.84789 0.84914 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.54 37.16 0.32 -1.07 16 2 C 0.17 1.98 1.16 -92.93 -0.11 1.87 16 3 O -0.55 -5.50 11.51 -35.23 -0.41 -5.90 16 4 C 0.47 7.75 6.65 -10.98 -0.07 7.67 16 5 O -0.52 -10.46 12.38 5.54 0.07 -10.39 16 6 N -0.61 -10.44 5.38 -10.00 -0.05 -10.49 16 7 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 8 C -0.03 -0.84 10.85 -17.04 -0.18 -1.02 16 9 N -0.26 -7.51 10.40 30.80 0.32 -7.19 16 10 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 11 C -0.32 -8.47 10.25 -14.81 -0.15 -8.62 16 12 H 0.12 2.69 7.83 -52.49 -0.41 2.28 16 13 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 14 N -0.77 -21.38 11.81 55.49 0.66 -20.72 16 15 Si 0.93 18.75 29.55 -169.99 -5.02 13.73 16 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 17 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 19 C -0.08 -1.92 11.49 -16.40 -0.19 -2.11 16 20 C -0.10 -1.13 4.56 -104.62 -0.48 -1.61 16 21 C -0.06 -0.77 8.01 -39.59 -0.32 -1.09 16 22 C -0.11 -1.27 9.83 -39.55 -0.39 -1.65 16 23 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.08 -0.78 28.96 -51.86 -1.50 -2.28 16 25 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 26 C -0.10 -1.01 9.24 -39.59 -0.37 -1.37 16 27 H 0.08 0.81 6.99 -51.93 -0.36 0.45 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.38 2.99 7.74 45.56 0.35 3.34 16 31 H 0.40 5.57 8.26 -40.82 -0.34 5.23 16 32 H 0.18 4.47 5.92 -52.48 -0.31 4.16 16 33 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.15 2.80 8.06 -52.48 -0.42 2.38 16 35 H 0.14 1.62 6.97 -52.49 -0.37 1.26 16 36 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.13 1.07 6.43 -52.49 -0.34 0.73 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -32.97 343.08 -7.08 -40.05 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -3.02 Total: 13.97 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.25 Total: -12.07 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.88 Total: -42.28 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.34 Total: -16.29 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.97 -7.08 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815152551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.913 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds