Wall clock time and date at job start Tue Mar 31 2020 19:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46979 * 2 1 4 4 C 1.50696 * 109.47169 * 240.00063 * 2 1 3 5 5 O 1.21303 * 120.00518 * 265.10962 * 4 2 1 6 6 N 1.34782 * 119.99981 * 85.10856 * 4 2 1 7 7 C 1.40598 * 120.00059 * 179.97438 * 6 4 2 8 8 C 1.40647 * 126.08170 * 359.97438 * 7 6 4 9 9 N 1.30906 * 108.38566 * 179.77704 * 8 7 6 10 10 N 1.40068 * 108.40669 * 0.37620 * 9 8 7 11 11 C 1.37326 * 126.06487 * 179.88050 * 10 9 8 12 12 H 1.08002 * 119.99158 * 179.69431 * 11 10 9 13 13 C 1.38982 * 120.00437 * 359.41358 * 11 10 9 14 14 N 1.31291 * 119.99918 * 0.27903 * 13 11 10 15 15 Si 1.86801 * 120.00028 * 180.27197 * 13 11 10 16 16 H 1.48499 * 109.46945 * 60.00575 * 15 13 11 17 17 H 1.48502 * 109.47046 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47457 * 300.00365 * 15 13 11 19 19 C 1.35674 * 126.08258 * 179.97438 * 7 6 4 20 20 C 1.50698 * 109.47169 * 120.00109 * 2 1 3 21 21 C 1.38242 * 119.98702 * 52.09231 * 20 2 1 22 22 C 1.38216 * 120.01273 * 179.72849 * 21 20 2 23 23 C 1.38354 * 119.98283 * 0.54280 * 22 21 20 24 24 Cl 1.73605 * 120.00982 * 179.70595 * 23 22 21 25 25 C 1.38345 * 119.97936 * 359.73011 * 23 22 21 26 26 C 1.38217 * 119.98276 * 359.97438 * 25 23 22 27 27 H 1.09000 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47174 * 299.99376 * 1 2 3 29 29 H 1.09000 * 109.47194 * 59.99947 * 1 2 3 30 30 H 0.96693 * 114.00311 * 179.97438 * 3 2 1 31 31 H 0.97002 * 119.99669 * 0.02562 * 6 4 2 32 32 H 1.08003 * 125.80869 * 0.02562 * 8 7 6 33 33 H 0.96999 * 120.00375 * 179.97438 * 14 13 11 34 34 H 1.08009 * 126.24335 * 0.02562 * 19 7 6 35 35 H 1.07999 * 119.99393 * 359.97438 * 21 20 2 36 36 H 1.08001 * 120.00981 * 180.26758 * 22 21 20 37 37 H 1.07994 * 120.01317 * 179.97438 * 25 23 22 38 38 H 1.08001 * 119.99253 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.3190 -1.8878 -1.1766 6 7 2.1631 -0.0374 -2.3909 7 6 2.6323 -0.7001 -3.5388 8 6 3.0008 -2.0549 -3.6206 9 7 3.3802 -2.3062 -4.8480 10 7 3.2777 -1.1247 -5.5933 11 6 3.5868 -0.9784 -6.9233 12 1 3.4656 -0.0186 -7.4033 13 6 4.0611 -2.0640 -7.6501 14 7 4.2084 -3.2308 -7.0664 15 14 4.4887 -1.8630 -9.4573 16 1 5.5556 -0.8403 -9.6027 17 1 4.9681 -3.1596 -9.9997 18 1 3.2820 -1.4294 -10.2063 19 6 2.8101 -0.1463 -4.7645 20 6 2.0323 -0.7104 1.2304 21 6 1.5691 -1.9769 1.5346 22 6 2.0337 -2.6312 2.6599 23 6 2.9541 -2.0139 3.4881 24 17 3.5323 -2.8321 4.9059 25 6 3.4131 -0.7442 3.1863 26 6 2.9524 -0.0933 2.0574 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9702 1.4237 0.0004 31 1 1.9343 0.9042 -2.4339 32 1 2.9716 -2.7678 -2.8098 33 1 4.5391 -3.9885 -7.5737 34 1 2.6177 0.8816 -5.0348 35 1 0.8470 -2.4567 0.8906 36 1 1.6750 -3.6224 2.8951 37 1 4.1312 -0.2616 3.8326 38 1 3.3109 0.8977 1.8214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815152551.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:02 Heat of formation + Delta-G solvation = 0.076561 kcal Electronic energy + Delta-G solvation = -25635.374310 eV Core-core repulsion = 21697.966872 eV Total energy + Delta-G solvation = -3937.407439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.00787 -41.19570 -39.72167 -38.00977 -37.24378 -35.94224 -34.90339 -33.32955 -32.23050 -31.95578 -30.42323 -29.50000 -26.97794 -25.49189 -23.78334 -23.42840 -22.75934 -21.39045 -21.06702 -19.69375 -18.94772 -18.47784 -17.43585 -17.22065 -16.83508 -16.48493 -16.13683 -16.04851 -15.59403 -15.27438 -15.18463 -14.80851 -14.61084 -14.45012 -14.24972 -13.73886 -13.50091 -13.35177 -13.27154 -13.15560 -12.88533 -12.87062 -12.77696 -12.50287 -12.38147 -12.14123 -11.87538 -11.82154 -11.70556 -10.99973 -10.81975 -10.46533 -10.10290 -9.99642 -9.63134 -8.53529 -8.46844 -6.24220 0.03864 0.32203 1.11101 1.17859 1.39952 1.47587 1.56230 1.85209 1.99884 2.21838 2.49831 2.64702 2.91082 3.02817 3.09316 3.42801 3.73743 3.80852 3.92384 4.07151 4.34701 4.43670 4.46387 4.59229 4.63642 4.73614 4.77844 4.96435 5.00129 5.06638 5.10125 5.18677 5.23037 5.29535 5.45532 5.46244 5.76561 5.95667 6.28848 6.41834 6.73811 6.75672 7.33597 7.46404 7.68348 8.52256 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.002445 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.415493 B =11449.828310 C =12227.046391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.186 3.814 3 O -0.537 6.537 4 C 0.474 3.526 5 O -0.560 6.560 6 N -0.605 5.605 7 C -0.045 4.045 8 C -0.058 4.058 9 N -0.311 5.311 10 N -0.167 5.167 11 C -0.354 4.354 12 H 0.141 0.859 13 C -0.007 4.007 14 N -0.825 5.825 15 Si 1.018 2.982 16 H -0.253 1.253 17 H -0.279 1.279 18 H -0.253 1.253 19 C -0.080 4.080 20 C -0.111 4.111 21 C -0.078 4.078 22 C -0.122 4.122 23 C -0.041 4.041 24 Cl -0.071 7.071 25 C -0.115 4.115 26 C -0.095 4.095 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.395 0.605 31 H 0.421 0.579 32 H 0.167 0.833 33 H 0.276 0.724 34 H 0.187 0.813 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 10.052 17.556 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.141 3.859 3 O -0.345 6.345 4 C 0.260 3.740 5 O -0.438 6.438 6 N -0.250 5.250 7 C -0.151 4.151 8 C -0.233 4.233 9 N -0.143 5.143 10 N 0.064 4.936 11 C -0.485 4.485 12 H 0.158 0.842 13 C -0.218 4.218 14 N -0.453 5.453 15 Si 0.837 3.163 16 H -0.177 1.177 17 H -0.204 1.204 18 H -0.177 1.177 19 C -0.231 4.231 20 C -0.112 4.112 21 C -0.097 4.097 22 C -0.141 4.141 23 C -0.067 4.067 24 Cl -0.042 7.042 25 C -0.134 4.134 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.246 0.754 31 H 0.258 0.742 32 H 0.184 0.816 33 H 0.086 0.914 34 H 0.204 0.796 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.173 0.827 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.744 8.187 16.894 19.363 hybrid contribution 0.523 0.212 -0.053 0.566 sum -4.222 8.399 16.841 19.287 Atomic orbital electron populations 1.21842 0.88373 1.03919 1.05181 1.19899 0.97269 0.81630 0.87093 1.86571 1.28840 1.22696 1.96433 1.21774 0.79042 0.87730 0.85465 1.90623 1.50515 1.17659 1.84990 1.42432 1.62549 1.13602 1.06397 1.17330 1.16941 0.92728 0.88075 1.24152 1.07026 0.96166 0.95992 1.78156 1.26885 1.06273 1.02986 1.44829 1.36098 1.04879 1.07824 1.20575 1.46047 1.00262 0.81643 0.84181 1.26871 0.94870 0.93821 1.06253 1.70389 1.34825 1.01295 1.38776 0.84662 0.79681 0.78388 0.73548 1.17709 1.20386 1.17714 1.22009 1.14014 0.96749 0.90286 1.20203 0.98837 0.95702 0.96461 1.21010 0.99386 0.93833 0.95427 1.21191 0.97362 1.01034 0.94484 1.21144 0.99575 0.94932 0.91077 1.98365 1.87948 1.79055 1.38874 1.21247 1.00783 0.93036 0.98313 1.21175 0.95467 1.01147 0.93526 0.90427 0.88623 0.90283 0.75402 0.74163 0.81596 0.91428 0.79601 0.85237 0.83973 0.82750 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.54 71.98 0.62 -1.91 16 2 C 0.19 4.05 1.16 -12.29 -0.01 4.04 16 3 O -0.54 -8.98 11.51 -148.98 -1.71 -10.70 16 4 C 0.47 15.04 6.65 87.65 0.58 15.62 16 5 O -0.56 -22.67 12.38 -3.10 -0.04 -22.71 16 6 N -0.60 -19.72 5.38 -303.93 -1.63 -21.35 16 7 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 8 C -0.06 -3.12 10.85 85.42 0.93 -2.19 16 9 N -0.31 -18.63 10.40 -56.47 -0.59 -19.22 16 10 N -0.17 -9.20 3.74 -190.02 -0.71 -9.91 16 11 C -0.35 -18.60 10.25 84.01 0.86 -17.74 16 12 H 0.14 6.34 7.83 -2.91 -0.02 6.32 16 13 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 14 N -0.82 -47.57 11.81 21.66 0.26 -47.31 16 15 Si 1.02 38.32 29.55 68.60 2.03 40.34 16 16 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 17 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 18 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 19 C -0.08 -3.64 11.49 83.37 0.96 -2.68 16 20 C -0.11 -2.47 4.56 -19.86 -0.09 -2.56 16 21 C -0.08 -1.87 8.01 22.27 0.18 -1.69 16 22 C -0.12 -2.71 9.83 22.29 0.22 -2.49 16 23 C -0.04 -0.85 6.32 22.32 0.14 -0.71 16 24 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 25 C -0.12 -2.11 9.83 22.29 0.22 -1.89 16 26 C -0.10 -1.74 9.24 22.27 0.21 -1.53 16 27 H 0.08 1.49 6.99 -2.39 -0.02 1.47 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.39 4.69 7.74 -74.06 -0.57 4.12 16 31 H 0.42 10.46 8.26 -92.71 -0.77 9.69 16 32 H 0.17 9.00 5.92 -2.91 -0.02 8.98 16 33 H 0.28 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.19 6.63 8.06 -2.91 -0.02 6.61 16 35 H 0.13 3.17 6.97 -2.91 -0.02 3.15 16 36 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.16 1.95 6.43 -2.91 -0.02 1.94 16 Total: -1.00 -74.81 343.08 2.86 -71.96 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.19 Total: 37.71 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 5.53 Total: -17.35 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -2.68 Total: -97.79 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.75 Total: -33.40 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -74.81 2.86 -71.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815152551.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.033 kcal (2) G-P(sol) polarization free energy of solvation -74.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds