Wall clock time and date at job start Tue Mar 31 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47424 * 300.00159 * 3 2 1 6 6 H 1.48497 * 109.47254 * 60.00694 * 3 2 1 7 7 C 1.37885 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99853 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42905 * 114.00040 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.47091 * 65.00251 * 12 11 10 14 14 C 1.34866 * 116.99857 * 179.97438 * 13 12 11 15 15 O 1.21597 * 120.00086 * 0.02562 * 14 13 12 16 16 C 1.46625 * 119.99925 * 180.02562 * 14 13 12 17 17 C 1.37052 * 126.14298 * 179.71787 * 16 14 13 18 18 N 1.30516 * 114.01011 * 179.82494 * 17 16 14 19 19 C 1.30273 * 117.35693 * 0.47668 * 18 17 16 20 20 C 1.47957 * 124.74170 * 179.76358 * 19 18 17 21 21 N 1.32686 * 119.22144 * 179.69173 * 20 19 18 22 22 C 1.32138 * 120.73222 * 179.76372 * 21 20 19 23 23 C 1.38756 * 119.20358 * 0.50439 * 22 21 20 24 24 C 1.38753 * 118.56658 * 359.74804 * 23 22 21 25 25 N 1.32136 * 119.20426 * 0.02562 * 24 23 22 26 26 S 1.70927 * 110.51989 * 359.73491 * 19 18 17 27 27 H 0.96998 * 120.00311 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47126 * 60.00117 * 9 7 2 29 29 H 1.09005 * 109.47067 * 300.00406 * 9 7 2 30 30 H 1.09003 * 109.46726 * 60.00166 * 11 10 9 31 31 H 1.08993 * 109.47089 * 299.99930 * 11 10 9 32 32 H 1.09001 * 109.47142 * 305.00214 * 12 11 10 33 33 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 34 34 H 1.07993 * 122.99010 * 0.02562 * 17 16 14 35 35 H 1.07998 * 120.39599 * 180.25342 * 22 21 20 36 36 H 1.07996 * 120.71402 * 179.77558 * 23 22 21 37 37 H 1.08000 * 120.39850 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9562 -0.0006 13 8 3.4002 -5.8885 1.2396 14 6 4.3991 -6.7804 1.3993 15 8 4.6349 -7.5922 0.5252 16 6 5.2008 -6.7713 2.6269 17 6 6.2364 -7.6189 2.9224 18 7 6.7893 -7.3973 4.0837 19 6 6.2979 -6.4310 4.8060 20 6 6.7937 -6.0429 6.1449 21 7 6.2141 -5.0343 6.7831 22 6 6.6298 -4.6656 7.9820 23 6 7.6917 -5.3401 8.5674 24 6 8.2782 -6.3867 7.8703 25 7 7.8114 -6.7079 6.6766 26 16 5.0007 -5.6734 3.9906 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.9446 -4.9827 -0.8897 31 1 0.9452 -4.9822 0.8902 32 1 3.3210 -5.7957 -0.8430 33 1 2.1820 -6.9376 -0.0898 34 1 6.5677 -8.3984 2.2524 35 1 6.1513 -3.8465 8.4983 36 1 8.0536 -5.0569 9.5447 37 1 9.1068 -6.9316 8.2978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815198869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:20 Heat of formation + Delta-G solvation = -26.984173 kcal Electronic energy + Delta-G solvation = -24191.257694 eV Core-core repulsion = 20254.720520 eV Total energy + Delta-G solvation = -3936.537174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48535 -40.49540 -39.55528 -37.08817 -36.05665 -34.28125 -33.36559 -32.78880 -30.94871 -29.87141 -27.36003 -26.85206 -25.13690 -24.19268 -23.17258 -22.37966 -21.71424 -20.18729 -19.38722 -17.90578 -17.57658 -16.79762 -16.65314 -16.62045 -16.33309 -15.81549 -15.77398 -15.36060 -14.87146 -14.60212 -14.34017 -14.24098 -14.20866 -14.01550 -13.61119 -12.96743 -12.71516 -12.04103 -11.73717 -11.50547 -11.47973 -11.38940 -10.99846 -10.91036 -10.81607 -10.68171 -10.63090 -10.46079 -10.10437 -10.04309 -9.75019 -9.73676 -9.13183 -9.08656 -8.90389 -8.23546 -6.13416 -4.14910 -0.63529 0.57191 0.60120 0.77202 1.35033 2.08435 2.53686 2.76148 2.87554 3.28122 3.34699 3.35295 3.41419 3.66137 4.07831 4.24776 4.30966 4.45284 4.55481 4.62932 4.70251 4.76690 4.91817 5.16091 5.23414 5.24034 5.41300 5.67132 5.76302 5.81852 5.88513 6.01848 6.39174 6.43043 7.03271 7.19686 7.37898 7.50753 7.62629 7.77079 8.10734 8.49912 8.97928 9.49953 10.98178 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.002736 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.226017 B =10230.757282 C =12518.064575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.076 3.924 13 O -0.336 6.336 14 C 0.546 3.454 15 O -0.498 6.498 16 C -0.294 4.294 17 C 0.128 3.872 18 N -0.438 5.438 19 C 0.058 3.942 20 C 0.382 3.618 21 N -0.505 5.505 22 C 0.158 3.842 23 C -0.219 4.219 24 C 0.150 3.850 25 N -0.475 5.475 26 S 0.352 5.648 27 H 0.264 0.736 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.197 0.803 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.796 -14.304 16.947 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.252 6.252 14 C 0.388 3.612 15 O -0.388 6.388 16 C -0.418 4.418 17 C -0.035 4.035 18 N -0.153 5.153 19 C -0.212 4.212 20 C 0.114 3.886 21 N -0.220 5.220 22 C -0.008 4.008 23 C -0.242 4.242 24 C -0.017 4.017 25 N -0.190 5.190 26 S 0.611 5.389 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.214 0.786 35 H 0.197 0.803 36 H 0.173 0.827 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 12.294 -14.010 16.296 24.758 hybrid contribution 0.694 0.359 0.198 0.806 sum 12.988 -13.651 16.494 25.041 Atomic orbital electron populations 1.69964 1.06099 1.27104 1.50608 1.24947 0.94982 0.99454 0.95118 0.86284 0.80066 0.82550 0.77637 1.19446 1.20846 1.20789 1.21083 0.94138 0.89257 1.50735 0.91450 1.20248 0.88736 0.83474 0.95545 1.87922 1.35329 1.12584 1.95239 1.22340 0.93141 0.85448 1.00769 1.23327 0.93582 0.99159 0.83621 1.86682 1.42985 1.53242 1.42322 1.19268 0.78619 0.78736 0.84528 1.90880 1.68061 1.38010 1.41810 1.25670 1.07040 1.07606 1.01494 1.22515 0.90481 0.98391 0.92159 1.66303 1.28334 1.15926 1.04746 1.24350 1.00742 0.98826 0.97299 1.19661 0.89186 0.88593 0.91121 1.68232 1.29958 1.13846 1.09940 1.23290 0.91773 0.96638 0.89133 1.23143 0.98998 0.98659 1.03419 1.23410 0.96766 0.92682 0.88796 1.68446 1.10619 1.28005 1.11910 1.84654 1.24503 1.26245 1.03488 0.92677 0.97569 0.97447 0.91657 0.93056 0.90067 0.90009 0.78638 0.80329 0.82718 0.80668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.24 5.69 36.00 0.20 5.45 16 10 O -0.39 -9.32 10.30 -38.79 -0.40 -9.72 16 11 C 0.06 1.08 6.33 37.16 0.24 1.31 16 12 C 0.08 1.18 5.86 37.16 0.22 1.40 16 13 O -0.34 -5.61 10.09 -43.73 -0.44 -6.05 16 14 C 0.55 8.44 7.93 34.11 0.27 8.71 16 15 O -0.50 -8.23 16.67 -19.34 -0.32 -8.55 16 16 C -0.29 -3.99 6.53 -36.63 -0.24 -4.23 16 17 C 0.13 1.59 11.16 -18.54 -0.21 1.38 16 18 N -0.44 -5.89 10.42 -11.96 -0.12 -6.01 16 19 C 0.06 0.76 7.23 -14.23 -0.10 0.65 16 20 C 0.38 4.63 7.59 -156.95 -1.19 3.44 16 21 N -0.50 -5.37 10.05 -11.21 -0.11 -5.48 16 22 C 0.16 1.05 11.30 -17.23 -0.19 0.86 16 23 C -0.22 -1.06 10.17 -39.20 -0.40 -1.46 16 24 C 0.15 1.01 11.30 -17.23 -0.19 0.82 16 25 N -0.48 -5.29 10.28 -11.21 -0.12 -5.41 16 26 S 0.35 4.50 22.71 -107.50 -2.44 2.06 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.16 0.18 8.06 -52.49 -0.42 -0.25 16 37 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 357.84 15.07 5.39 5.39 Total: -1.00 -36.04 357.84 -8.64 -44.68 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: -3.77 Total: -6.20 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -2.02 Total: 4.47 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.38 Total: -42.79 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.16 Total: -24.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -2.44 Total: 2.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.04 -8.64 -44.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815198869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.700 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds