Wall clock time and date at job start Tue Mar 31 2020 18:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00559 * 2 1 4 4 H 1.48498 * 109.47377 * 269.99986 * 3 2 1 5 5 H 1.48506 * 109.46832 * 30.00203 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99519 * 3 2 1 7 7 C 1.37886 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99856 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.47131 * 179.97438 * 9 7 2 11 11 O 1.42094 * 110.54618 * 68.37110 * 10 9 7 12 12 O 1.42103 * 110.54338 * 291.62335 * 10 9 7 13 13 N 1.65601 * 104.45169 * 179.97438 * 10 9 7 14 14 C 1.34780 * 119.99950 * 64.99752 * 13 10 9 15 15 O 1.21570 * 120.00038 * 359.97438 * 14 13 10 16 16 C 1.47734 * 119.99818 * 180.02562 * 14 13 10 17 17 C 1.41189 * 126.33279 * 180.02562 * 16 14 13 18 18 C 1.36679 * 105.44736 * 179.97438 * 17 16 14 19 19 C 1.48006 * 126.59290 * 179.97438 * 18 17 16 20 20 C 1.39478 * 120.13846 * 0.02562 * 19 18 17 21 21 C 1.37985 * 119.86426 * 180.02562 * 20 19 18 22 22 C 1.38345 * 120.13301 * 359.97280 * 21 20 19 23 23 C 1.38338 * 120.27686 * 0.02562 * 22 21 20 24 24 C 1.37985 * 120.13544 * 0.02562 * 23 22 21 25 25 N 1.36372 * 106.80710 * 0.25711 * 18 17 16 26 26 H 0.96996 * 125.00472 * 179.73951 * 25 18 17 27 27 N 1.28450 * 109.97858 * 359.55545 * 25 18 17 28 28 H 0.97002 * 120.00033 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47390 * 59.99522 * 9 7 2 30 30 H 1.09000 * 109.46831 * 299.99879 * 9 7 2 31 31 H 0.96997 * 120.00056 * 244.99972 * 13 10 9 32 32 H 1.08004 * 127.27077 * 359.95735 * 17 16 14 33 33 H 1.08003 * 120.07276 * 359.97438 * 20 19 18 34 34 H 1.08003 * 119.93458 * 180.24996 * 21 20 19 35 35 H 1.07999 * 119.85824 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.93304 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.06432 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4296 -3.8780 0.0005 11 8 3.1264 -3.9384 1.2374 12 8 3.1263 -3.9384 -1.2365 13 7 1.4792 -5.2342 0.0013 14 6 0.6881 -5.5032 -1.0563 15 8 0.6718 -4.7501 -2.0104 16 6 -0.1602 -6.7127 -1.0553 17 6 -1.0340 -7.1224 -2.0859 18 6 -1.5982 -8.2861 -1.6437 19 6 -2.5903 -9.1152 -2.3641 20 6 -3.0394 -8.7304 -3.6273 21 6 -3.9648 -9.5073 -4.2936 22 6 -4.4466 -10.6661 -3.7115 23 6 -4.0050 -11.0532 -2.4590 24 6 -3.0806 -10.2842 -1.7821 25 7 -1.0761 -8.5329 -0.4083 26 1 -1.3002 -9.2949 0.1484 27 7 -0.2409 -7.6096 -0.0923 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 1.4918 -5.8348 0.7627 32 1 -1.2179 -6.6218 -3.0251 33 1 -2.6643 -7.8257 -4.0826 34 1 -4.3103 -9.2125 -5.2735 35 1 -5.1705 -11.2711 -4.2372 36 1 -4.3852 -11.9587 -2.0096 37 1 -2.7370 -10.5872 -0.8041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:51 Heat of formation + Delta-G solvation = -14.066101 kcal Electronic energy + Delta-G solvation = -25068.804315 eV Core-core repulsion = 21132.827311 eV Total energy + Delta-G solvation = -3935.977004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89024 -39.54555 -39.23997 -36.18812 -35.12687 -34.15273 -33.31440 -33.03503 -32.30132 -31.23408 -29.22881 -29.01494 -24.95742 -23.70261 -23.47892 -22.92035 -21.21227 -20.56962 -19.20052 -18.71421 -17.59308 -17.17755 -16.68549 -16.38656 -16.07621 -15.55341 -15.47984 -15.20457 -14.74149 -14.51095 -14.35256 -14.11018 -14.07700 -13.70179 -13.54627 -13.27484 -12.51068 -12.13895 -11.95559 -11.83265 -11.50459 -11.42563 -11.24976 -11.17889 -11.15049 -10.88017 -10.62759 -10.46149 -10.36957 -10.25383 -9.79289 -9.65559 -9.42883 -9.12604 -8.67054 -8.54778 -6.29154 -4.40092 0.42884 0.93389 1.06402 1.35288 2.05866 2.44020 3.14160 3.23984 3.25563 3.30766 3.36142 3.43947 3.93432 4.16264 4.26568 4.34443 4.46974 4.60201 4.66808 4.77031 4.96110 4.99772 5.05237 5.15257 5.24227 5.36238 5.43099 5.47335 5.56209 5.93625 6.02477 6.05686 6.06888 6.45445 6.57817 6.65667 6.81269 7.03455 7.45711 7.50168 7.76329 7.80638 8.61026 9.26893 10.82688 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.002497 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.431091 B =11208.869244 C =11975.030642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.071 0.929 9 C -0.404 4.404 10 S 2.555 3.445 11 O -0.966 6.966 12 O -0.951 6.951 13 N -1.050 6.050 14 C 0.626 3.374 15 O -0.476 6.476 16 C -0.010 4.010 17 C -0.148 4.148 18 C 0.049 3.951 19 C -0.018 4.018 20 C -0.094 4.094 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.117 4.117 25 N -0.374 5.374 26 H 0.446 0.554 27 N -0.239 5.239 28 H 0.269 0.731 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.429 0.571 32 H 0.172 0.828 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 -23.429 -3.898 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.657 3.343 11 O -0.957 6.957 12 O -0.941 6.941 13 N -0.809 5.809 14 C 0.410 3.590 15 O -0.344 6.344 16 C -0.171 4.171 17 C -0.175 4.175 18 C -0.075 4.075 19 C -0.020 4.020 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.136 4.136 25 N -0.090 5.090 26 H 0.292 0.708 27 N -0.076 5.076 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.264 0.736 32 H 0.189 0.811 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.117 -23.012 -3.579 25.392 hybrid contribution -0.742 0.316 0.098 0.812 sum -10.859 -22.696 -3.482 25.400 Atomic orbital electron populations 1.69958 1.06266 1.27709 1.47361 1.24922 0.95030 0.99562 0.93437 0.86337 0.79942 0.81660 0.78794 1.19832 1.20642 1.19077 1.20291 0.92761 0.88433 1.55853 0.91077 1.27613 1.09894 1.09076 1.07536 1.07133 0.77221 0.75794 0.74111 1.93521 1.71054 1.85871 1.45256 1.93532 1.70760 1.85166 1.44673 1.55371 1.55402 1.43867 1.26271 1.16665 0.77531 0.83247 0.81588 1.91015 1.63642 1.47068 1.32648 1.21752 1.03631 0.97630 0.94132 1.21804 0.98750 0.95532 1.01456 1.19872 1.01273 0.98123 0.88221 1.17891 0.95606 0.94097 0.94406 1.21230 0.96687 1.00086 0.93289 1.21159 0.96824 0.94784 1.00195 1.21294 0.99800 0.96855 0.95521 1.21044 0.97219 0.99721 0.95195 1.21059 0.98226 0.94490 0.99803 1.43513 1.30568 1.20802 1.14167 0.70841 1.73481 1.09905 0.99213 1.24963 0.92175 0.88249 0.89569 0.73579 0.81094 0.84811 0.85244 0.85718 0.85598 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 3 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -15.11 9.13 -34.44 -0.31 -15.43 16 8 H 0.07 1.96 7.71 -52.49 -0.40 1.55 16 9 C -0.40 -10.23 5.64 36.01 0.20 -10.03 16 10 S 2.56 57.07 5.03 -107.50 -0.54 56.53 16 11 O -0.97 -22.67 18.08 -57.54 -1.04 -23.71 16 12 O -0.95 -24.03 17.04 -64.78 -1.10 -25.14 16 13 N -1.05 -18.60 5.60 30.50 0.17 -18.43 16 14 C 0.63 11.38 7.56 -12.38 -0.09 11.29 16 15 O -0.48 -10.16 15.02 -11.79 -0.18 -10.34 16 16 C -0.01 -0.15 7.11 -82.86 -0.59 -0.74 16 17 C -0.15 -1.85 10.16 -39.03 -0.40 -2.24 16 18 C 0.05 0.49 6.98 -82.41 -0.58 -0.08 16 19 C -0.02 -0.15 5.87 -104.97 -0.62 -0.77 16 20 C -0.09 -0.72 9.58 -39.21 -0.38 -1.10 16 21 C -0.11 -0.71 10.03 -39.63 -0.40 -1.11 16 22 C -0.12 -0.66 10.04 -39.51 -0.40 -1.06 16 23 C -0.11 -0.65 10.03 -39.64 -0.40 -1.04 16 24 C -0.12 -0.75 9.71 -39.21 -0.38 -1.13 16 25 N -0.37 -3.45 6.80 33.31 0.23 -3.22 16 26 H 0.45 2.34 8.08 -190.45 -1.54 0.80 16 27 N -0.24 -2.98 11.89 33.37 0.40 -2.59 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.10 2.61 7.19 -51.92 -0.37 2.24 16 30 H 0.09 2.11 8.14 -51.92 -0.42 1.69 16 31 H 0.43 6.17 8.50 -34.47 -0.29 5.87 16 32 H 0.17 1.91 7.39 -52.48 -0.39 1.53 16 33 H 0.13 0.93 7.10 -52.48 -0.37 0.56 16 34 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 35 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 37 H 0.12 0.48 7.20 -52.49 -0.38 0.10 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -37.41 344.69 -10.16 -47.57 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.57 Total: 3.77 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -4.43 Total: -21.37 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 1.53 Total: -48.83 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -2.32 Total: -59.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 57.07 SS G_CDS: -0.54 Total: 56.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.41 -10.16 -47.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.506 kcal (2) G-P(sol) polarization free energy of solvation -37.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds