Wall clock time and date at job start Tue Mar 31 2020 18:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00559 * 2 1 4 4 H 1.48498 * 109.47377 * 269.99986 * 3 2 1 5 5 H 1.48506 * 109.46832 * 30.00203 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99519 * 3 2 1 7 7 C 1.37886 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99856 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.47131 * 179.97438 * 9 7 2 11 11 O 1.42094 * 110.54618 * 68.37110 * 10 9 7 12 12 O 1.42103 * 110.54338 * 291.62335 * 10 9 7 13 13 N 1.65601 * 104.45169 * 179.97438 * 10 9 7 14 14 C 1.34780 * 119.99950 * 64.99752 * 13 10 9 15 15 O 1.21570 * 120.00038 * 359.97438 * 14 13 10 16 16 C 1.47734 * 119.99818 * 180.02562 * 14 13 10 17 17 C 1.41189 * 126.33279 * 180.02562 * 16 14 13 18 18 C 1.36679 * 105.44736 * 179.97438 * 17 16 14 19 19 C 1.48006 * 126.59290 * 179.97438 * 18 17 16 20 20 C 1.39478 * 120.13846 * 0.02562 * 19 18 17 21 21 C 1.37985 * 119.86426 * 180.02562 * 20 19 18 22 22 C 1.38345 * 120.13301 * 359.97280 * 21 20 19 23 23 C 1.38338 * 120.27686 * 0.02562 * 22 21 20 24 24 C 1.37985 * 120.13544 * 0.02562 * 23 22 21 25 25 N 1.36372 * 106.80710 * 0.25711 * 18 17 16 26 26 H 0.96996 * 125.00472 * 179.73951 * 25 18 17 27 27 N 1.28450 * 109.97858 * 359.55545 * 25 18 17 28 28 H 0.97002 * 120.00033 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47390 * 59.99522 * 9 7 2 30 30 H 1.09000 * 109.46831 * 299.99879 * 9 7 2 31 31 H 0.96997 * 120.00056 * 244.99972 * 13 10 9 32 32 H 1.08004 * 127.27077 * 359.95735 * 17 16 14 33 33 H 1.08003 * 120.07276 * 359.97438 * 20 19 18 34 34 H 1.08003 * 119.93458 * 180.24996 * 21 20 19 35 35 H 1.07999 * 119.85824 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.93304 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.06432 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 16 2.4296 -3.8780 0.0005 11 8 3.1264 -3.9384 1.2374 12 8 3.1263 -3.9384 -1.2365 13 7 1.4792 -5.2342 0.0013 14 6 0.6881 -5.5032 -1.0563 15 8 0.6718 -4.7501 -2.0104 16 6 -0.1602 -6.7127 -1.0553 17 6 -1.0340 -7.1224 -2.0859 18 6 -1.5982 -8.2861 -1.6437 19 6 -2.5903 -9.1152 -2.3641 20 6 -3.0394 -8.7304 -3.6273 21 6 -3.9648 -9.5073 -4.2936 22 6 -4.4466 -10.6661 -3.7115 23 6 -4.0050 -11.0532 -2.4590 24 6 -3.0806 -10.2842 -1.7821 25 7 -1.0761 -8.5329 -0.4083 26 1 -1.3002 -9.2949 0.1484 27 7 -0.2409 -7.6096 -0.0923 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 1.4918 -5.8348 0.7627 32 1 -1.2179 -6.6218 -3.0251 33 1 -2.6643 -7.8257 -4.0826 34 1 -4.3103 -9.2125 -5.2735 35 1 -5.1705 -11.2711 -4.2372 36 1 -4.3852 -11.9587 -2.0096 37 1 -2.7370 -10.5872 -0.8041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:50 Heat of formation + Delta-G solvation = -42.344814 kcal Electronic energy + Delta-G solvation = -25070.030572 eV Core-core repulsion = 21132.827311 eV Total energy + Delta-G solvation = -3937.203261 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.82830 -40.94566 -39.84041 -38.11400 -37.07470 -35.70758 -35.41740 -33.74946 -33.22613 -31.76603 -31.10626 -29.95542 -26.23307 -25.53826 -24.35120 -23.52529 -22.01828 -21.82614 -20.82256 -19.53281 -19.25519 -18.69457 -18.32705 -17.57878 -17.20297 -17.00215 -16.62109 -16.22855 -16.08976 -15.90455 -15.76870 -15.69404 -14.77227 -14.51572 -14.26511 -14.23222 -14.13709 -13.80565 -13.70034 -13.48103 -13.22012 -13.11710 -12.73713 -12.55240 -12.48237 -12.11665 -12.06321 -11.94716 -11.87330 -11.72520 -11.11479 -11.07970 -10.78632 -10.63211 -9.89223 -9.22957 -8.41749 -6.61167 -0.78245 -0.19604 0.13607 0.47258 1.29281 1.38144 1.41266 1.46670 1.52956 1.72719 1.92237 2.31051 2.71828 2.86743 2.92338 2.92623 3.28799 3.40081 3.62138 3.84638 4.03845 4.10395 4.24120 4.34765 4.37248 4.54892 4.64667 4.73528 4.75704 4.93775 5.06050 5.14752 5.29914 5.45244 5.50460 5.58592 5.60375 5.69141 5.88190 6.02612 6.29569 6.48494 6.64037 7.10403 8.71443 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020993 B = 0.002497 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.431091 B =11208.869244 C =11975.030642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.419 4.419 10 S 2.601 3.399 11 O -0.975 6.975 12 O -0.979 6.979 13 N -1.036 6.036 14 C 0.625 3.375 15 O -0.515 6.515 16 C -0.037 4.037 17 C -0.170 4.170 18 C 0.073 3.927 19 C -0.043 4.043 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.116 4.116 25 N -0.350 5.350 26 H 0.466 0.534 27 N -0.239 5.239 28 H 0.275 0.725 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.446 0.554 32 H 0.173 0.827 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -25.577 -3.506 28.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.606 4.606 8 H 0.088 0.912 9 C -0.554 4.554 10 S 2.701 3.299 11 O -0.965 6.965 12 O -0.970 6.970 13 N -0.800 5.800 14 C 0.412 3.588 15 O -0.385 6.385 16 C -0.197 4.197 17 C -0.198 4.198 18 C -0.052 4.052 19 C -0.045 4.045 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.134 4.134 25 N -0.069 5.069 26 H 0.315 0.685 27 N -0.078 5.078 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.285 0.715 32 H 0.191 0.809 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.169 -25.181 -3.148 27.726 hybrid contribution -0.583 0.737 -0.052 0.941 sum -11.752 -24.444 -3.200 27.310 Atomic orbital electron populations 1.70044 1.07683 1.29003 1.47761 1.25901 0.96011 1.03305 0.92687 0.85380 0.78966 0.77255 0.79286 1.19065 1.19138 1.18263 1.20732 0.93196 0.90198 1.56505 0.91161 1.27654 1.10648 1.10502 1.06618 1.05506 0.76074 0.75271 0.73053 1.93499 1.71277 1.86220 1.45543 1.93490 1.71511 1.85776 1.46196 1.54855 1.55039 1.42831 1.27233 1.17122 0.77180 0.83900 0.80642 1.90987 1.64872 1.48692 1.33999 1.21258 1.04909 0.97455 0.96074 1.21936 0.99348 0.96877 1.01603 1.20009 1.00292 0.97035 0.87848 1.17937 0.96439 0.95173 0.94918 1.21395 0.97304 1.00494 0.93552 1.21411 0.96565 0.95030 1.00940 1.21679 0.99455 0.96447 0.95645 1.21413 0.96690 1.00398 0.95147 1.21377 0.97792 0.93508 1.00754 1.43577 1.28912 1.20357 1.14076 0.68452 1.73399 1.10610 0.99395 1.24352 0.91617 0.90049 0.89532 0.71534 0.80929 0.85118 0.83746 0.83443 0.83063 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.48 13.29 21.45 0.28 -53.20 16 2 C 0.02 1.39 5.46 84.66 0.46 1.85 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.57 -32.94 9.13 25.60 0.23 -32.70 16 8 H 0.07 3.96 7.71 -2.91 -0.02 3.94 16 9 C -0.42 -22.05 5.64 71.24 0.40 -21.65 16 10 S 2.60 118.64 5.03 -56.49 -0.28 118.36 16 11 O -0.97 -45.76 18.08 -127.65 -2.31 -48.06 16 12 O -0.98 -50.67 17.04 -120.73 -2.06 -52.73 16 13 N -1.04 -37.30 5.60 -175.67 -0.98 -38.28 16 14 C 0.63 23.47 7.56 86.75 0.66 24.12 16 15 O -0.51 -23.12 15.02 12.41 0.19 -22.93 16 16 C -0.04 -1.12 7.11 42.38 0.30 -0.82 16 17 C -0.17 -4.30 10.16 22.63 0.23 -4.07 16 18 C 0.07 1.38 6.98 40.66 0.28 1.66 16 19 C -0.04 -0.64 5.87 -20.09 -0.12 -0.76 16 20 C -0.11 -1.58 9.58 22.51 0.22 -1.36 16 21 C -0.12 -1.33 10.03 22.24 0.22 -1.11 16 22 C -0.11 -0.97 10.04 22.32 0.22 -0.74 16 23 C -0.12 -0.94 10.03 22.23 0.22 -0.72 16 24 C -0.12 -1.14 9.71 22.51 0.22 -0.93 16 25 N -0.35 -5.76 6.80 -48.51 -0.33 -6.09 16 26 H 0.47 3.49 8.08 -220.01 -1.78 1.72 16 27 N -0.24 -5.72 11.89 -48.34 -0.57 -6.29 16 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.08 4.53 7.19 -2.39 -0.02 4.51 16 30 H 0.09 4.42 8.14 -2.39 -0.02 4.40 16 31 H 0.45 12.69 8.50 -96.75 -0.82 11.87 16 32 H 0.17 4.11 7.39 -2.91 -0.02 4.09 16 33 H 0.13 1.86 7.10 -2.91 -0.02 1.84 16 34 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.15 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.15 0.42 8.06 -2.91 -0.02 0.39 16 37 H 0.14 0.61 7.20 -2.91 -0.02 0.58 16 Total: -1.00 -81.78 344.69 -1.93 -83.71 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -1.44 Total: 16.94 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.56 Total: -37.21 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -1.60 Total: -103.85 kcal Atomic # 8 Polarization: -119.55 SS G_CDS: -4.18 Total: -123.72 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 118.64 SS G_CDS: -0.28 Total: 118.36 kcal Total: -81.78 -1.93 -83.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.364 kcal (2) G-P(sol) polarization free energy of solvation -81.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds