Wall clock time and date at job start Tue Mar 31 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99977 * 2 1 4 4 H 1.48500 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47065 * 299.99349 * 3 2 1 6 6 H 1.48497 * 109.47342 * 59.99241 * 3 2 1 7 7 C 1.37880 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99990 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.47387 * 179.97438 * 9 7 2 11 11 O 1.42109 * 110.53807 * 68.37830 * 10 9 7 12 12 O 1.42098 * 110.54422 * 291.62859 * 10 9 7 13 13 N 1.65602 * 104.44973 * 179.97438 * 10 9 7 14 14 C 1.34777 * 119.99511 * 65.28308 * 13 10 9 15 15 O 1.21603 * 120.00257 * 359.71861 * 14 13 10 16 16 C 1.47416 * 119.99544 * 179.72172 * 14 13 10 17 17 C 1.41324 * 126.41188 * 0.02562 * 16 14 13 18 18 N 1.30473 * 108.06834 * 179.97438 * 17 16 14 19 19 N 1.39937 * 108.91706 * 359.97438 * 18 17 16 20 20 C 1.40149 * 125.77434 * 180.02562 * 19 18 17 21 21 C 1.38846 * 120.06728 * 179.70353 * 20 19 18 22 22 C 1.38116 * 119.92961 * 179.67684 * 21 20 19 23 23 C 1.38279 * 120.06797 * 0.61834 * 22 21 20 24 24 C 1.38283 * 120.13772 * 359.67920 * 23 22 21 25 25 C 1.38118 * 120.06146 * 359.97438 * 24 23 22 26 26 C 1.34542 * 108.45351 * 359.75400 * 19 18 17 27 27 H 0.96996 * 120.00318 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.46735 * 59.99597 * 9 7 2 29 29 H 1.09001 * 109.47233 * 300.00421 * 9 7 2 30 30 H 0.97001 * 119.99942 * 244.99793 * 13 10 9 31 31 H 1.07998 * 125.96766 * 359.97438 * 17 16 14 32 32 H 1.07994 * 120.03421 * 359.97438 * 21 20 19 33 33 H 1.08003 * 119.96967 * 180.34006 * 22 21 20 34 34 H 1.08003 * 119.93411 * 179.70263 * 23 22 21 35 35 H 1.07995 * 119.97104 * 180.02562 * 24 23 22 36 36 H 1.08007 * 120.03119 * 180.02562 * 25 24 23 37 37 H 1.07998 * 126.31192 * 180.24058 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0005 11 8 3.1265 -3.9382 1.2377 12 8 3.1266 -3.9382 -1.2364 13 7 1.4794 -5.2341 0.0013 14 6 0.6927 -5.5061 -1.0587 15 8 0.6769 -4.7530 -2.0134 16 6 -0.1487 -6.7165 -1.0607 17 6 -0.2360 -7.6791 -0.0297 18 7 -1.0846 -8.5969 -0.4037 19 7 -1.5750 -8.2710 -1.6732 20 6 -2.5077 -9.0162 -2.4074 21 6 -2.9181 -8.5776 -3.6592 22 6 -3.8323 -9.3177 -4.3831 23 6 -4.3486 -10.4876 -3.8569 24 6 -3.9465 -10.9238 -2.6078 25 6 -3.0271 -10.1918 -1.8821 26 6 -1.0041 -7.1182 -2.0673 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 1.4921 -5.8348 0.7628 31 1 0.3052 -7.6587 0.9047 32 1 -2.5191 -7.6613 -4.0685 33 1 -4.1478 -8.9800 -5.3592 34 1 -5.0670 -11.0621 -4.4228 35 1 -4.3511 -11.8382 -2.1996 36 1 -2.7131 -10.5332 -0.9068 37 1 -1.1802 -6.6035 -3.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:57 Heat of formation + Delta-G solvation = -1.828934 kcal Electronic energy + Delta-G solvation = -25153.412778 eV Core-core repulsion = 21217.966417 eV Total energy + Delta-G solvation = -3935.446361 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02788 -39.66757 -39.00872 -36.20749 -35.14121 -34.34811 -33.70787 -33.33058 -31.71870 -30.57787 -29.51172 -29.02574 -24.75603 -23.67653 -23.51072 -22.59056 -21.13581 -20.43202 -19.17805 -18.97115 -17.45122 -17.04199 -16.44620 -16.26534 -15.92111 -15.72328 -15.53245 -15.13909 -14.70780 -14.44321 -14.40264 -14.24636 -14.12096 -14.00334 -13.15386 -13.11886 -12.53516 -12.17722 -12.13061 -11.92611 -11.76596 -11.43388 -11.28373 -11.26520 -11.15774 -10.92067 -10.80614 -10.63188 -10.45579 -10.04560 -9.76676 -9.51893 -9.49155 -9.14334 -8.69733 -8.52918 -6.31326 -4.42097 0.31908 0.83715 1.05500 1.51278 1.87449 1.89849 3.15374 3.22102 3.25420 3.29703 3.32400 3.36130 3.93402 4.24690 4.28536 4.40960 4.45371 4.58902 4.64171 4.73092 4.82193 4.87300 5.00976 5.08061 5.13284 5.20778 5.24626 5.45369 5.49562 5.74548 5.84494 5.98361 6.08815 6.22187 6.62107 6.67600 6.79956 7.02387 7.16387 7.44500 7.75408 7.83755 8.59395 9.25090 10.80525 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.002543 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.177599 B =11007.298286 C =11789.437939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.071 0.929 9 C -0.405 4.405 10 S 2.557 3.443 11 O -0.968 6.968 12 O -0.952 6.952 13 N -1.056 6.056 14 C 0.615 3.385 15 O -0.494 6.494 16 C -0.281 4.281 17 C 0.097 3.903 18 N -0.290 5.290 19 N -0.312 5.312 20 C 0.153 3.847 21 C -0.137 4.137 22 C -0.092 4.092 23 C -0.127 4.127 24 C -0.098 4.098 25 C -0.114 4.114 26 C 0.135 3.865 27 H 0.268 0.732 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.422 0.578 31 H 0.201 0.799 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -21.560 -4.574 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.659 3.341 11 O -0.959 6.959 12 O -0.942 6.942 13 N -0.814 5.814 14 C 0.402 3.598 15 O -0.366 6.366 16 C -0.297 4.297 17 C -0.092 4.092 18 N -0.107 5.107 19 N -0.084 5.084 20 C 0.061 3.939 21 C -0.157 4.157 22 C -0.111 4.111 23 C -0.145 4.145 24 C -0.116 4.116 25 C -0.134 4.134 26 C -0.013 4.013 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.256 0.744 31 H 0.217 0.783 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.152 -22.114 -5.004 24.842 hybrid contribution 0.152 1.458 0.322 1.500 sum -10.000 -20.656 -4.683 23.422 Atomic orbital electron populations 1.69963 1.06265 1.27605 1.47484 1.24922 0.95026 0.99578 0.93450 0.86285 0.80379 0.82052 0.78032 1.18952 1.20307 1.20360 1.20334 0.92789 0.88468 1.55682 0.91057 1.27612 1.09911 1.09146 1.07474 1.07046 0.77147 0.75814 0.74043 1.93522 1.71125 1.85948 1.45309 1.93529 1.70771 1.85163 1.44719 1.55320 1.56241 1.43763 1.26073 1.16948 0.77552 0.84051 0.81252 1.90992 1.64284 1.48534 1.32812 1.20302 1.09322 1.01811 0.98249 1.24296 0.95128 0.90569 0.99237 1.77236 1.15780 1.23845 0.93813 1.45679 1.31800 1.17221 1.13745 1.17613 0.91821 0.93033 0.91434 1.20961 1.00091 1.01718 0.92946 1.21023 0.95740 0.94509 0.99827 1.21296 1.00379 0.96830 0.96012 1.21104 0.96405 0.99641 0.94489 1.20945 0.97724 0.93407 1.01318 1.23115 0.91810 0.86552 0.99795 0.92236 0.88294 0.89637 0.74372 0.78260 0.84711 0.84703 0.85280 0.84934 0.84248 0.78666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.29 55.43 0.74 -24.36 16 2 C 0.08 2.14 5.46 -17.82 -0.10 2.04 16 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.90 9.13 -34.44 -0.31 -15.22 16 8 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 9 C -0.40 -10.01 5.65 36.00 0.20 -9.81 16 10 S 2.56 54.88 5.03 -107.50 -0.54 54.34 16 11 O -0.97 -21.81 18.08 -57.54 -1.04 -22.85 16 12 O -0.95 -23.53 17.03 -64.81 -1.10 -24.63 16 13 N -1.06 -16.87 5.60 30.43 0.17 -16.70 16 14 C 0.62 10.31 7.55 -12.52 -0.09 10.21 16 15 O -0.49 -10.15 15.01 -11.92 -0.18 -10.33 16 16 C -0.28 -3.73 6.13 -105.05 -0.64 -4.38 16 17 C 0.10 1.06 11.50 -16.96 -0.20 0.86 16 18 N -0.29 -3.45 11.77 30.87 0.36 -3.09 16 19 N -0.31 -3.60 3.77 -10.21 -0.04 -3.63 16 20 C 0.15 1.50 6.68 -83.60 -0.56 0.94 16 21 C -0.14 -1.09 9.45 -39.40 -0.37 -1.46 16 22 C -0.09 -0.58 10.04 -39.61 -0.40 -0.98 16 23 C -0.13 -0.73 10.04 -39.55 -0.40 -1.13 16 24 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 25 C -0.11 -0.99 9.65 -39.40 -0.38 -1.37 16 26 C 0.13 1.60 10.60 -16.43 -0.17 1.43 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.10 2.56 7.20 -51.92 -0.37 2.19 16 29 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 30 H 0.42 4.81 7.74 -34.47 -0.27 4.54 16 31 H 0.20 1.40 7.50 -52.49 -0.39 1.01 16 32 H 0.14 0.89 6.71 -52.49 -0.35 0.54 16 33 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 34 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 36 H 0.14 1.21 7.68 -52.48 -0.40 0.80 16 37 H 0.20 1.88 7.01 -52.49 -0.37 1.51 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -37.86 344.53 -8.67 -46.52 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.39 Total: 3.25 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -3.82 Total: -19.87 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 1.23 Total: -47.78 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -2.32 Total: -57.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 54.88 SS G_CDS: -0.54 Total: 54.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.86 -8.67 -46.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.696 kcal (2) G-P(sol) polarization free energy of solvation -37.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds