Wall clock time and date at job start Tue Mar 31 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99977 * 2 1 4 4 H 1.48500 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47065 * 299.99349 * 3 2 1 6 6 H 1.48497 * 109.47342 * 59.99241 * 3 2 1 7 7 C 1.37880 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99990 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.47387 * 179.97438 * 9 7 2 11 11 O 1.42109 * 110.53807 * 68.37830 * 10 9 7 12 12 O 1.42098 * 110.54422 * 291.62859 * 10 9 7 13 13 N 1.65602 * 104.44973 * 179.97438 * 10 9 7 14 14 C 1.34777 * 119.99511 * 65.28308 * 13 10 9 15 15 O 1.21603 * 120.00257 * 359.71861 * 14 13 10 16 16 C 1.47416 * 119.99544 * 179.72172 * 14 13 10 17 17 C 1.41324 * 126.41188 * 0.02562 * 16 14 13 18 18 N 1.30473 * 108.06834 * 179.97438 * 17 16 14 19 19 N 1.39937 * 108.91706 * 359.97438 * 18 17 16 20 20 C 1.40149 * 125.77434 * 180.02562 * 19 18 17 21 21 C 1.38846 * 120.06728 * 179.70353 * 20 19 18 22 22 C 1.38116 * 119.92961 * 179.67684 * 21 20 19 23 23 C 1.38279 * 120.06797 * 0.61834 * 22 21 20 24 24 C 1.38283 * 120.13772 * 359.67920 * 23 22 21 25 25 C 1.38118 * 120.06146 * 359.97438 * 24 23 22 26 26 C 1.34542 * 108.45351 * 359.75400 * 19 18 17 27 27 H 0.96996 * 120.00318 * 0.02562 * 1 2 3 28 28 H 1.09009 * 109.46735 * 59.99597 * 9 7 2 29 29 H 1.09001 * 109.47233 * 300.00421 * 9 7 2 30 30 H 0.97001 * 119.99942 * 244.99793 * 13 10 9 31 31 H 1.07998 * 125.96766 * 359.97438 * 17 16 14 32 32 H 1.07994 * 120.03421 * 359.97438 * 21 20 19 33 33 H 1.08003 * 119.96967 * 180.34006 * 22 21 20 34 34 H 1.08003 * 119.93411 * 179.70263 * 23 22 21 35 35 H 1.07995 * 119.97104 * 180.02562 * 24 23 22 36 36 H 1.08007 * 120.03119 * 180.02562 * 25 24 23 37 37 H 1.07998 * 126.31192 * 180.24058 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4298 -3.8779 0.0005 11 8 3.1265 -3.9382 1.2377 12 8 3.1266 -3.9382 -1.2364 13 7 1.4794 -5.2341 0.0013 14 6 0.6927 -5.5061 -1.0587 15 8 0.6769 -4.7530 -2.0134 16 6 -0.1487 -6.7165 -1.0607 17 6 -0.2360 -7.6791 -0.0297 18 7 -1.0846 -8.5969 -0.4037 19 7 -1.5750 -8.2710 -1.6732 20 6 -2.5077 -9.0162 -2.4074 21 6 -2.9181 -8.5776 -3.6592 22 6 -3.8323 -9.3177 -4.3831 23 6 -4.3486 -10.4876 -3.8569 24 6 -3.9465 -10.9238 -2.6078 25 6 -3.0271 -10.1918 -1.8821 26 6 -1.0041 -7.1182 -2.0673 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5570 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 1.4921 -5.8348 0.7628 31 1 0.3052 -7.6587 0.9047 32 1 -2.5191 -7.6613 -4.0685 33 1 -4.1478 -8.9800 -5.3592 34 1 -5.0670 -11.0621 -4.4228 35 1 -4.3511 -11.8382 -2.1996 36 1 -2.7131 -10.5332 -0.9068 37 1 -1.1802 -6.6035 -3.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:57 Heat of formation + Delta-G solvation = -29.419645 kcal Electronic energy + Delta-G solvation = -25154.609201 eV Core-core repulsion = 21217.966417 eV Total energy + Delta-G solvation = -3936.642784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.92206 -40.80867 -39.83682 -38.05452 -37.01538 -35.67007 -35.39873 -34.60749 -32.35337 -31.42649 -31.06941 -30.23532 -25.85685 -25.44803 -24.37007 -23.45281 -21.92298 -21.50452 -20.69628 -19.96381 -19.18643 -18.38093 -18.04815 -17.48553 -17.03290 -16.78763 -16.46422 -16.40126 -16.13611 -16.06359 -15.74006 -15.31615 -14.94773 -14.56009 -14.50259 -14.10064 -13.96390 -13.79547 -13.62017 -13.45213 -13.16599 -13.06178 -12.74687 -12.67992 -12.56946 -12.51932 -12.02717 -12.00311 -11.78545 -11.56256 -11.37403 -11.04244 -10.78162 -10.40750 -10.05134 -9.26735 -8.41073 -6.59712 -0.71493 -0.42042 0.30585 0.53165 1.05161 1.07616 1.38646 1.39558 1.54068 1.66304 2.01918 2.31553 2.75129 2.79580 2.93438 3.04933 3.38565 3.48009 3.64747 3.81721 3.86811 3.98334 4.08047 4.21916 4.39772 4.42384 4.52439 4.61038 4.69582 4.79771 4.99731 5.06143 5.30288 5.31773 5.36177 5.49339 5.62649 5.70012 5.77893 5.99270 6.28067 6.49077 6.54037 7.11807 8.72147 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.002543 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.177599 B =11007.298286 C =11789.437939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.565 4.565 8 H 0.069 0.931 9 C -0.422 4.422 10 S 2.605 3.395 11 O -0.976 6.976 12 O -0.983 6.983 13 N -1.038 6.038 14 C 0.617 3.383 15 O -0.538 6.538 16 C -0.304 4.304 17 C 0.105 3.895 18 N -0.306 5.306 19 N -0.308 5.308 20 C 0.116 3.884 21 C -0.145 4.145 22 C -0.095 4.095 23 C -0.119 4.119 24 C -0.099 4.099 25 C -0.126 4.126 26 C 0.139 3.861 27 H 0.274 0.726 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.445 0.555 31 H 0.236 0.764 32 H 0.142 0.858 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.133 0.867 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -23.019 -4.829 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.604 4.604 8 H 0.087 0.913 9 C -0.557 4.557 10 S 2.705 3.295 11 O -0.966 6.966 12 O -0.973 6.973 13 N -0.802 5.802 14 C 0.407 3.593 15 O -0.413 6.413 16 C -0.320 4.320 17 C -0.083 4.083 18 N -0.123 5.123 19 N -0.079 5.079 20 C 0.026 3.974 21 C -0.165 4.165 22 C -0.113 4.113 23 C -0.137 4.137 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.011 4.011 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.284 0.716 31 H 0.252 0.748 32 H 0.160 0.840 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.151 0.849 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.022 -23.605 -5.224 26.570 hybrid contribution 0.255 1.705 0.329 1.755 sum -10.767 -21.901 -4.896 24.890 Atomic orbital electron populations 1.70045 1.07632 1.28848 1.48007 1.25874 0.95984 1.03252 0.92802 0.85355 0.79180 0.77720 0.78763 1.18464 1.19425 1.18888 1.20768 0.93153 0.90364 1.56147 0.91298 1.27673 1.10776 1.10696 1.06532 1.05306 0.75929 0.75315 0.72931 1.93503 1.71299 1.86299 1.45549 1.93487 1.71587 1.85828 1.46418 1.54715 1.55622 1.42635 1.27218 1.17386 0.77142 0.84497 0.80297 1.90971 1.65702 1.50230 1.34429 1.20014 1.10391 1.01394 1.00187 1.24834 0.94550 0.89150 0.99771 1.77223 1.16316 1.24416 0.94333 1.45847 1.31541 1.16929 1.13612 1.17990 0.92945 0.94024 0.92475 1.21212 1.00471 1.02319 0.92504 1.21400 0.94868 0.94407 1.00625 1.21717 0.99882 0.96476 0.95665 1.21432 0.95535 1.00122 0.94649 1.21066 0.98534 0.93513 1.01486 1.23403 0.91064 0.86598 1.00035 0.91703 0.90206 0.89518 0.71584 0.74809 0.84029 0.82254 0.82332 0.82556 0.84945 0.77198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.87 13.29 21.45 0.28 -52.58 16 2 C 0.02 1.36 5.46 84.66 0.46 1.82 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.57 -32.30 9.13 25.60 0.23 -32.06 16 8 H 0.07 3.84 7.71 -2.91 -0.02 3.82 16 9 C -0.42 -21.54 5.65 71.24 0.40 -21.14 16 10 S 2.61 112.69 5.03 -56.49 -0.28 112.40 16 11 O -0.98 -43.40 18.08 -127.65 -2.31 -45.71 16 12 O -0.98 -49.28 17.03 -120.70 -2.06 -51.33 16 13 N -1.04 -32.77 5.60 -175.89 -0.98 -33.76 16 14 C 0.62 20.83 7.55 86.66 0.65 21.48 16 15 O -0.54 -22.82 15.01 12.40 0.19 -22.63 16 16 C -0.30 -7.95 6.13 -20.14 -0.12 -8.08 16 17 C 0.11 2.18 11.50 85.65 0.99 3.17 16 18 N -0.31 -7.05 11.77 -56.24 -0.66 -7.71 16 19 N -0.31 -6.98 3.77 -186.21 -0.70 -7.68 16 20 C 0.12 2.22 6.68 38.10 0.25 2.47 16 21 C -0.14 -2.14 9.45 22.39 0.21 -1.93 16 22 C -0.09 -0.96 10.04 22.25 0.22 -0.73 16 23 C -0.12 -1.02 10.04 22.29 0.22 -0.79 16 24 C -0.10 -1.06 10.04 22.25 0.22 -0.83 16 25 C -0.13 -2.07 9.65 22.39 0.22 -1.86 16 26 C 0.14 3.28 10.60 84.24 0.89 4.17 16 27 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.08 4.34 7.20 -2.39 -0.02 4.32 16 29 H 0.09 4.28 8.14 -2.39 -0.02 4.26 16 30 H 0.44 9.47 7.74 -96.74 -0.75 8.72 16 31 H 0.24 2.73 7.50 -2.91 -0.02 2.70 16 32 H 0.14 1.77 6.71 -2.91 -0.02 1.75 16 33 H 0.16 0.78 8.06 -2.91 -0.02 0.75 16 34 H 0.16 0.42 8.06 -2.91 -0.02 0.39 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.13 2.26 7.68 -2.91 -0.02 2.24 16 37 H 0.21 4.07 7.01 -2.91 -0.02 4.05 16 Total: -1.00 -82.96 344.53 0.75 -82.21 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.39 Total: 15.71 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 4.86 Total: -34.31 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -2.06 Total: -101.73 kcal Atomic # 8 Polarization: -115.49 SS G_CDS: -4.18 Total: -119.67 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 112.69 SS G_CDS: -0.28 Total: 112.40 kcal Total: -82.96 0.75 -82.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.786 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds