Wall clock time and date at job start Tue Mar 31 2020 19:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86795 * 120.00095 * 2 1 4 4 H 1.48503 * 109.46698 * 239.99870 * 3 2 1 5 5 H 1.48500 * 109.47610 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47589 * 119.99872 * 3 2 1 7 7 C 1.38632 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99316 * 180.02562 * 7 2 1 9 9 O 1.34801 * 120.00143 * 359.97438 * 7 2 1 10 10 C 1.35794 * 117.00026 * 174.93981 * 9 7 2 11 11 C 1.38720 * 120.08681 * 5.59982 * 10 9 7 12 12 C 1.38352 * 119.98311 * 180.02562 * 11 10 9 13 13 F 1.35099 * 119.92353 * 180.02562 * 12 11 10 14 14 C 1.38525 * 120.15772 * 0.02562 * 12 11 10 15 15 C 1.38220 * 120.17581 * 359.67664 * 14 12 11 16 16 C 1.38711 * 120.01300 * 0.60201 * 15 14 12 17 17 N 1.39927 * 120.07761 * 179.69578 * 16 15 14 18 18 S 1.65604 * 120.00155 * 35.47868 * 17 16 15 19 19 O 1.42095 * 104.27440 * 303.94178 * 18 17 16 20 20 O 1.42094 * 104.27843 * 176.08168 * 18 17 16 21 21 C 1.81401 * 104.44577 * 60.01005 * 18 17 16 22 22 C 1.53006 * 109.47067 * 180.02562 * 21 18 17 23 23 C 1.52994 * 109.47414 * 180.02562 * 22 21 18 24 24 C 1.52998 * 109.47495 * 179.97438 * 23 22 21 25 25 F 1.39899 * 109.47307 * 179.97438 * 24 23 22 26 26 H 0.97009 * 120.00042 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.01168 * 359.97438 * 11 10 9 28 28 H 1.07999 * 119.91340 * 180.02562 * 14 12 11 29 29 H 1.07999 * 119.98909 * 180.32056 * 15 14 12 30 30 H 0.97000 * 120.00534 * 215.47828 * 17 16 15 31 31 H 1.08998 * 109.47730 * 300.00003 * 21 18 17 32 32 H 1.08997 * 109.46978 * 60.00491 * 21 18 17 33 33 H 1.09007 * 109.46806 * 300.00297 * 22 21 18 34 34 H 1.09001 * 109.46720 * 59.99865 * 22 21 18 35 35 H 1.09007 * 109.47103 * 300.00364 * 23 22 21 36 36 H 1.09005 * 109.46843 * 59.99809 * 23 22 21 37 37 H 1.08998 * 109.46844 * 300.00310 * 24 23 22 38 38 H 1.09001 * 109.46527 * 59.99655 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6962 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3680 0.0016 10 6 2.0702 -3.5046 -0.1047 11 6 3.4559 -3.4402 -0.0911 12 6 4.2030 -4.5995 -0.2000 13 9 5.5524 -4.5354 -0.1861 14 6 3.5708 -5.8259 -0.3233 15 6 2.1905 -5.8983 -0.3314 16 6 1.4344 -4.7400 -0.2285 17 7 0.0370 -4.8111 -0.2429 18 16 -0.7344 -6.0913 0.4702 19 8 -0.1783 -7.2339 -0.1657 20 8 -2.1157 -5.7824 0.3444 21 6 -0.2213 -6.0175 2.2086 22 6 -0.8756 -7.1638 2.9825 23 6 -0.4434 -7.1013 4.4488 24 6 -1.0981 -8.2471 5.2229 25 9 -0.7024 -8.1902 6.5636 26 1 -0.4851 0.8401 -0.0004 27 1 3.9514 -2.4852 0.0037 28 1 4.1579 -6.7284 -0.4076 29 1 1.7007 -6.8565 -0.4224 30 1 -0.4800 -4.1106 -0.6707 31 1 0.8629 -6.1093 2.2717 32 1 -0.5310 -5.0650 2.6386 33 1 -1.9600 -7.0724 2.9195 34 1 -0.5656 -8.1161 2.5523 35 1 0.6410 -7.1923 4.5122 36 1 -0.7537 -6.1489 4.8787 37 1 -2.1823 -8.1555 5.1595 38 1 -0.7881 -9.1996 4.7930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829882682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:44 Heat of formation + Delta-G solvation = -202.016107 kcal Electronic energy + Delta-G solvation = -26713.560986 eV Core-core repulsion = 22318.744672 eV Total energy + Delta-G solvation = -4394.816314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.82094 -48.54551 -41.06073 -38.66461 -38.04621 -37.17160 -36.55326 -35.68280 -34.32486 -31.11565 -30.87459 -29.47030 -27.40219 -25.07911 -23.97286 -23.25449 -22.49153 -20.48184 -20.16736 -19.56428 -18.78888 -18.33364 -17.60118 -17.41155 -17.06882 -16.84359 -16.64557 -16.63057 -16.54544 -15.98105 -15.74028 -15.63618 -15.48532 -15.29217 -14.99040 -14.25110 -14.18171 -13.82056 -13.69726 -13.57302 -13.40907 -13.31518 -13.22302 -13.05960 -12.82612 -12.63248 -12.23155 -12.15099 -12.11421 -12.08470 -11.78725 -11.52732 -11.51340 -11.31226 -10.83960 -9.64505 -8.87666 -8.51657 -6.18640 -0.87813 0.20096 0.44213 1.36773 1.44907 1.50249 1.52298 2.13501 2.52635 2.62916 3.00976 3.12457 3.20535 3.35509 3.44347 3.71425 3.78063 3.90766 4.01920 4.04378 4.14194 4.22151 4.23924 4.35758 4.49161 4.55087 4.73628 4.88919 4.92327 5.01770 5.03271 5.12467 5.22171 5.23928 5.27921 5.47030 5.81284 5.91922 6.05388 6.92824 7.62642 8.68345 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009790 B = 0.003695 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.487377 B = 7577.000412 C = 8285.320252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.010 4.010 3 Si 1.010 2.990 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.417 4.417 8 H 0.102 0.898 9 O -0.200 6.200 10 C 0.133 3.867 11 C -0.261 4.261 12 C 0.125 3.875 13 F -0.144 7.144 14 C -0.190 4.190 15 C -0.100 4.100 16 C 0.071 3.929 17 N -1.046 6.046 18 S 2.617 3.383 19 O -0.966 6.966 20 O -0.986 6.986 21 C -0.612 4.612 22 C -0.115 4.115 23 C -0.145 4.145 24 C 0.052 3.948 25 F -0.238 7.238 26 H 0.275 0.725 27 H 0.135 0.865 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.424 0.576 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -13.783 5.953 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.209 4.209 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.493 4.493 8 H 0.120 0.880 9 O -0.105 6.105 10 C 0.078 3.922 11 C -0.282 4.282 12 C 0.105 3.895 13 F -0.123 7.123 14 C -0.209 4.209 15 C -0.121 4.121 16 C -0.026 4.026 17 N -0.794 5.794 18 S 2.715 3.285 19 O -0.956 6.956 20 O -0.977 6.977 21 C -0.745 4.745 22 C -0.154 4.154 23 C -0.185 4.185 24 C -0.003 4.003 25 F -0.220 7.220 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.184 0.816 29 H 0.199 0.801 30 H 0.260 0.740 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.389 -14.318 5.598 15.379 hybrid contribution 0.717 2.049 0.188 2.179 sum 1.107 -12.269 5.786 13.610 Atomic orbital electron populations 1.70135 1.07660 1.29093 1.47339 1.26399 0.96743 1.02269 0.95534 0.84749 0.77528 0.74849 0.79840 1.18518 1.19773 1.18275 1.21743 0.92592 0.81182 1.53782 0.88033 1.83936 1.34795 1.11864 1.79864 1.19308 0.90069 0.87731 0.95097 1.21020 0.93463 0.99273 1.14475 1.17515 0.76274 0.94292 1.01461 1.91444 1.29512 1.97348 1.93972 1.20900 0.94295 0.96613 1.09129 1.21617 0.93708 0.97824 0.98951 1.16828 0.82452 0.91752 1.11573 1.53041 1.11852 1.44259 1.70287 1.04897 0.72698 0.72599 0.78281 1.93481 1.78752 1.49884 1.73509 1.93563 1.33091 1.83891 1.87121 1.30429 1.13618 1.09540 1.20874 1.21371 1.01709 0.96707 0.95638 1.22103 1.02614 0.99888 0.93861 1.22265 1.01402 1.00810 0.75814 1.92732 1.93127 1.97917 1.38182 0.91627 0.84742 0.81592 0.80126 0.73973 0.83071 0.83964 0.88927 0.87815 0.89946 0.90718 0.88920 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.85 13.67 21.61 0.30 -50.55 16 2 C -0.01 -0.50 5.49 84.83 0.47 -0.03 16 3 Si 1.01 39.95 29.55 68.60 2.03 41.98 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.42 -21.92 9.49 67.91 0.64 -21.27 16 8 H 0.10 4.93 5.21 -2.91 -0.02 4.92 16 9 O -0.20 -10.37 9.33 -22.94 -0.21 -10.59 16 10 C 0.13 5.74 6.66 22.69 0.15 5.89 16 11 C -0.26 -10.40 9.14 22.41 0.20 -10.20 16 12 C 0.12 4.21 7.29 22.37 0.16 4.38 16 13 F -0.14 -4.67 17.26 44.97 0.78 -3.89 16 14 C -0.19 -5.42 10.02 22.33 0.22 -5.19 16 15 C -0.10 -3.01 9.25 22.38 0.21 -2.80 16 16 C 0.07 2.57 6.15 38.26 0.24 2.80 16 17 N -1.05 -35.64 5.54 -50.98 -0.28 -35.92 16 18 S 2.62 72.62 5.23 -56.49 -0.30 72.33 16 19 O -0.97 -28.10 15.06 -127.65 -1.92 -30.02 16 20 O -0.99 -33.47 18.08 -127.65 -2.31 -35.78 16 21 C -0.61 -12.52 5.90 71.98 0.42 -12.09 16 22 C -0.12 -1.75 5.22 30.59 0.16 -1.60 16 23 C -0.15 -2.13 5.67 30.59 0.17 -1.96 16 24 C 0.05 0.66 7.55 71.98 0.54 1.21 16 25 F -0.24 -4.72 17.36 44.97 0.78 -3.94 16 26 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 27 H 0.13 5.52 5.64 -2.91 -0.02 5.51 16 28 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.18 4.85 5.18 -2.91 -0.02 4.83 16 30 H 0.42 15.70 8.68 -96.75 -0.84 14.86 16 31 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -68.59 346.45 2.74 -65.85 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.28 Total: 31.40 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.60 Total: -40.86 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: 0.01 Total: -86.48 kcal Atomic # 8 Polarization: -71.94 SS G_CDS: -4.44 Total: -76.39 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 1.56 Total: -7.83 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 72.62 SS G_CDS: -0.30 Total: 72.33 kcal Total: -68.59 2.74 -65.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829882682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.165 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds