Wall clock time and date at job start Tue Mar 31 2020 18:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39153 * 119.05082 * 2 1 4 4 C 1.39137 * 119.51985 * 179.72422 * 3 2 1 5 5 C 1.48014 * 121.16031 * 180.29793 * 4 3 2 6 6 O 1.21426 * 120.00594 * 234.96114 * 5 4 3 7 7 O 1.34692 * 119.99562 * 54.96414 * 5 4 3 8 8 C 1.41129 * 117.68178 * 0.27882 * 4 3 2 9 9 C 1.41360 * 122.08901 * 180.02562 * 8 4 3 10 10 O 1.35276 * 120.83866 * 359.97438 * 9 8 4 11 11 N 1.32265 * 118.31911 * 179.97438 * 9 8 4 12 12 C 1.33117 * 121.27047 * 0.02562 * 11 9 8 13 13 S 1.76207 * 118.59914 * 180.02562 * 12 11 9 14 14 C 1.80999 * 99.99763 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47130 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47103 * 180.02562 * 15 14 13 17 17 H 1.08006 * 119.99985 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99992 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00437 * 180.02562 * 18 16 15 20 20 Si 1.86806 * 119.99887 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47255 * 90.00317 * 20 18 16 22 22 H 1.48507 * 109.46909 * 210.00298 * 20 18 16 23 23 H 1.48504 * 109.47037 * 329.99913 * 20 18 16 24 24 N 1.32002 * 122.80762 * 359.97438 * 12 11 9 25 25 C 1.34041 * 120.49593 * 359.97438 * 24 12 11 26 26 N 1.31221 * 119.05199 * 180.31116 * 2 1 3 27 27 H 1.08995 * 109.47266 * 89.99445 * 1 2 3 28 28 H 1.09004 * 109.47059 * 209.99690 * 1 2 3 29 29 H 1.09007 * 109.46917 * 329.99448 * 1 2 3 30 30 H 1.08000 * 120.24127 * 0.02562 * 3 2 1 31 31 H 0.96704 * 116.99537 * 180.02562 * 7 5 4 32 32 H 0.96701 * 113.99431 * 95.25159 * 10 9 8 33 33 H 1.09002 * 109.47481 * 300.00386 * 14 13 12 34 34 H 1.09005 * 109.46919 * 60.00361 * 14 13 12 35 35 H 1.08994 * 109.47001 * 300.00067 * 15 14 13 36 36 H 1.08997 * 109.46977 * 60.00153 * 15 14 13 37 37 H 0.96998 * 119.99935 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1827 1.2165 0.0000 4 6 3.5740 1.2279 0.0058 5 6 4.3294 2.5007 0.0126 6 8 5.1621 2.7172 -0.8442 7 8 4.0932 3.4188 0.9694 8 6 4.2398 -0.0165 0.0055 9 6 5.6501 -0.1136 0.0116 10 8 6.4216 0.9976 0.0177 11 7 6.1961 -1.3183 0.0113 12 6 5.4450 -2.4173 0.0049 13 16 6.2464 -3.9866 0.0057 14 6 7.9768 -3.4557 0.0152 15 6 8.8874 -4.6852 0.0179 16 6 10.3281 -4.2432 0.0265 17 1 10.5701 -3.1906 0.0301 18 6 11.3374 -5.1825 0.0296 19 7 12.5947 -4.7969 0.0376 20 14 10.9189 -7.0031 0.0225 21 1 10.8159 -7.4819 -1.3793 22 1 11.9858 -7.7590 0.7267 23 1 9.6224 -7.2157 0.7148 24 7 4.1255 -2.3818 -0.0010 25 6 3.4765 -1.2090 -0.0003 26 7 2.1442 -1.1471 -0.0062 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6311 2.1450 0.0004 31 1 4.6110 4.2347 0.9322 32 1 6.7083 1.2724 0.8994 33 1 8.1778 -2.8561 -0.8725 34 1 8.1690 -2.8598 0.9075 35 1 8.6863 -5.2844 0.9058 36 1 8.6953 -5.2816 -0.8740 37 1 13.3047 -5.4578 0.0395 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832866161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:28 Heat of formation + Delta-G solvation = -43.626244 kcal Electronic energy + Delta-G solvation = -25302.125998 eV Core-core repulsion = 21364.867170 eV Total energy + Delta-G solvation = -3937.258828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14138 -40.41836 -39.29565 -37.86107 -36.53050 -34.07625 -33.84017 -33.51103 -31.72414 -31.29259 -29.08750 -26.16437 -25.66369 -25.05271 -24.09564 -21.55326 -21.14971 -20.18883 -19.09213 -18.38098 -18.30941 -17.53211 -17.09996 -16.96487 -16.56246 -16.02135 -15.66622 -15.06956 -14.69509 -14.45543 -14.36062 -14.06579 -13.80670 -13.58252 -13.37528 -12.84845 -12.77646 -12.69049 -12.62338 -12.03709 -11.87943 -11.54681 -11.31669 -11.23508 -11.20498 -10.53387 -10.41813 -10.34536 -10.17695 -9.93398 -9.74296 -9.57733 -9.38626 -9.29448 -8.62991 -7.64057 -6.12932 -4.13757 -0.60586 0.03828 0.98590 1.26998 1.75252 2.17418 2.36717 2.42449 3.04040 3.25058 3.27627 3.35303 3.38222 3.54256 3.90041 3.97458 4.03140 4.37709 4.38004 4.49227 4.78748 4.83252 5.03014 5.09942 5.14623 5.20053 5.26920 5.55116 5.83377 5.83909 5.88979 5.93735 6.39088 6.47232 6.88685 6.99572 7.10593 7.19143 7.30993 7.59847 7.74444 8.40278 8.89677 9.46531 10.99619 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.002824 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.357330 B = 9912.565133 C =11305.683357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.209 3.791 3 C -0.147 4.147 4 C 0.007 3.993 5 C 0.519 3.481 6 O -0.457 6.457 7 O -0.508 6.508 8 C -0.223 4.223 9 C 0.441 3.559 10 O -0.450 6.450 11 N -0.536 5.536 12 C 0.353 3.647 13 S 0.016 5.984 14 C -0.082 4.082 15 C -0.001 4.001 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.263 1.263 24 N -0.496 5.496 25 C 0.383 3.617 26 N -0.457 5.457 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.419 0.581 32 H 0.408 0.592 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.710 16.928 3.107 30.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.052 3.948 3 C -0.169 4.169 4 C -0.005 4.005 5 C 0.358 3.642 6 O -0.341 6.341 7 O -0.321 6.321 8 C -0.236 4.236 9 C 0.234 3.766 10 O -0.258 6.258 11 N -0.264 5.264 12 C -0.023 4.023 13 S 0.257 5.743 14 C -0.231 4.231 15 C -0.040 4.040 16 C -0.559 4.559 17 H 0.095 0.905 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.704 3.296 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.188 1.188 24 N -0.218 5.218 25 C 0.134 3.866 26 N -0.169 5.169 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.175 0.825 31 H 0.279 0.721 32 H 0.269 0.731 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.936 13.537 2.273 28.464 hybrid contribution 1.113 2.615 0.321 2.860 sum -23.823 16.152 2.593 28.899 Atomic orbital electron populations 1.20928 0.86870 1.04726 1.04303 1.21730 0.97872 0.86731 0.88441 1.22245 0.92388 1.00580 1.01644 1.19120 0.93719 0.89862 0.97826 1.20532 0.80541 0.83497 0.79592 1.91028 1.29716 1.77092 1.36252 1.84608 1.65148 1.31010 1.51331 1.20097 0.95396 0.95416 1.12661 1.19635 0.85514 0.86095 0.85367 1.84910 1.69088 1.37537 1.34229 1.68576 1.41038 0.98043 1.18767 1.25322 0.88556 0.97773 0.90600 1.86155 1.04842 0.97210 1.86083 1.23919 0.88273 1.04107 1.06771 1.19464 0.94943 0.91953 0.97683 1.20883 0.87333 0.95606 1.52052 0.90505 1.24960 0.94801 0.99068 0.94230 1.69891 0.98988 1.34429 1.50210 0.86816 0.78655 0.85353 0.78805 1.19998 1.21119 1.18769 1.68632 1.07622 1.25459 1.20085 1.19115 0.89698 0.86526 0.91213 1.67374 1.06907 1.28528 1.14081 0.89018 0.89215 0.89540 0.82517 0.72123 0.73087 0.88869 0.88926 0.95372 0.95810 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.14 36.00 0.37 -0.14 16 2 C 0.21 1.86 6.78 -82.52 -0.56 1.30 16 3 C -0.15 -1.13 9.49 -38.91 -0.37 -1.50 16 4 C 0.01 0.07 5.81 -104.46 -0.61 -0.54 16 5 C 0.52 4.73 6.62 34.74 0.23 4.96 16 6 O -0.46 -5.65 15.37 -27.22 -0.42 -6.07 16 7 O -0.51 -2.70 13.44 -40.47 -0.54 -3.24 16 8 C -0.22 -3.06 5.78 -106.34 -0.61 -3.67 16 9 C 0.44 6.48 7.83 -16.18 -0.13 6.36 16 10 O -0.45 -5.62 9.46 -41.61 -0.39 -6.02 16 11 N -0.54 -9.20 9.05 -13.14 -0.12 -9.32 16 12 C 0.35 6.28 7.84 -90.83 -0.71 5.57 16 13 S 0.02 0.29 22.23 -107.50 -2.39 -2.09 16 14 C -0.08 -1.65 4.72 37.16 0.18 -1.48 16 15 C 0.00 -0.02 4.04 -27.88 -0.11 -0.13 16 16 C -0.52 -14.45 9.66 -34.44 -0.33 -14.79 16 17 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 20 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 24 N -0.50 -8.72 10.45 -13.12 -0.14 -8.85 16 25 C 0.38 5.92 7.66 -157.85 -1.21 4.71 16 26 N -0.46 -6.08 10.29 -8.88 -0.09 -6.17 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.16 8.07 -51.92 -0.42 -0.26 16 30 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.42 0.37 9.11 45.56 0.42 0.78 16 32 H 0.41 3.02 9.06 45.56 0.41 3.43 16 33 H 0.09 1.92 8.10 -51.92 -0.42 1.50 16 34 H 0.09 1.85 8.10 -51.91 -0.42 1.43 16 35 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -36.83 342.15 -8.86 -45.68 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -2.05 Total: -1.85 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -3.97 Total: 2.60 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.43 Total: -50.75 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.36 Total: -15.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.39 Total: -2.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.83 -8.86 -45.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832866161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.055 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds