Wall clock time and date at job start Tue Mar 31 2020 19:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00213 * 2 1 4 4 H 1.48500 * 109.47110 * 239.99592 * 3 2 1 5 5 H 1.48498 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47206 * 119.99565 * 3 2 1 7 7 C 1.37879 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99965 * 175.47670 * 7 2 1 9 9 C 1.50703 * 120.00146 * 355.74502 * 7 2 1 10 10 C 1.53005 * 115.54871 * 35.31720 * 9 7 2 11 11 O 1.45199 * 109.46842 * 54.24397 * 10 9 7 12 12 C 1.34706 * 116.99466 * 184.94096 * 11 10 9 13 13 O 1.21461 * 120.00486 * 5.03238 * 12 11 10 14 14 C 1.47753 * 119.99643 * 185.02974 * 12 11 10 15 15 C 1.39372 * 120.07422 * 184.76897 * 14 12 11 16 16 C 1.39342 * 119.69555 * 179.70993 * 15 14 12 17 17 C 1.47732 * 120.07799 * 180.29893 * 16 15 14 18 18 O 1.21475 * 119.99856 * 0.26717 * 17 16 15 19 19 O 1.34711 * 120.00383 * 180.27248 * 17 16 15 20 20 C 1.39765 * 119.84183 * 0.56494 * 16 15 14 21 21 C 1.38049 * 120.15313 * 359.73012 * 20 16 15 22 22 N 1.48020 * 119.84537 * 179.97438 * 21 20 16 23 23 O 1.21803 * 120.00058 * 179.97438 * 22 21 20 24 24 O 1.21803 * 120.00270 * 359.97438 * 22 21 20 25 25 C 1.38096 * 120.30793 * 359.97372 * 21 20 16 26 26 C 1.53005 * 117.49754 * 249.64949 * 9 7 2 27 27 C 1.52998 * 117.50078 * 180.99173 * 9 7 2 28 28 H 0.97007 * 119.99727 * 5.00881 * 1 2 3 29 29 H 1.09000 * 109.47097 * 174.24361 * 10 9 7 30 30 H 1.08998 * 109.47085 * 294.24351 * 10 9 7 31 31 H 1.07996 * 120.15410 * 0.02562 * 15 14 12 32 32 H 0.96695 * 117.00211 * 179.97438 * 19 17 16 33 33 H 1.08005 * 119.92055 * 179.75223 * 20 16 15 34 34 H 1.07996 * 119.92314 * 180.02562 * 25 21 20 35 35 H 1.08994 * 117.50241 * 0.02562 * 26 9 7 36 36 H 1.09004 * 117.49339 * 145.02281 * 26 9 7 37 37 H 1.09000 * 117.49489 * 214.98297 * 27 9 7 38 38 H 1.08999 * 117.50166 * 359.97385 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0820 -1.1956 -0.0732 9 6 1.2541 -2.4974 0.0979 10 6 -0.0999 -2.5340 -0.6137 11 8 0.0721 -2.1436 -2.0016 12 6 -1.0442 -2.0244 -2.7461 13 8 -2.1357 -2.1508 -2.2287 14 6 -0.9406 -1.7398 -4.1923 15 6 -2.0926 -1.5178 -4.9446 16 6 -1.9855 -1.2441 -6.3067 17 6 -3.2006 -1.0008 -7.1108 18 8 -4.2946 -1.0345 -6.5838 19 8 -3.0957 -0.7418 -8.4286 20 6 -0.7260 -1.2057 -6.9114 21 6 0.4105 -1.4327 -6.1613 22 7 1.7409 -1.3909 -6.8088 23 8 2.7456 -1.5903 -6.1497 24 8 1.8311 -1.1572 -8.0008 25 6 0.3120 -1.6984 -4.8098 26 6 1.3923 -3.2968 1.3952 27 6 2.0773 -3.7869 0.1170 28 1 -0.4850 0.8369 -0.0734 29 1 -0.5071 -3.5441 -0.5682 30 1 -0.7864 -1.8431 -0.1243 31 1 -3.0636 -1.5526 -4.4731 32 1 -3.9186 -0.5896 -8.9131 33 1 -0.6417 -0.9976 -7.9678 34 1 1.2052 -1.8747 -4.2289 35 1 2.0255 -2.8800 2.1782 36 1 0.5186 -3.8493 1.7413 37 1 1.6541 -4.6614 -0.3772 38 1 3.1616 -3.6927 0.0586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833062776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:23 Heat of formation + Delta-G solvation = -114.824457 kcal Electronic energy + Delta-G solvation = -28444.984638 eV Core-core repulsion = 24029.592801 eV Total energy + Delta-G solvation = -4415.391836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.36681 -41.00771 -40.01948 -38.74308 -36.86063 -36.69166 -36.60312 -35.25590 -32.55186 -32.43441 -32.26386 -27.04959 -26.72394 -25.56836 -25.46256 -24.18961 -21.90400 -21.38396 -20.89166 -19.30798 -19.05103 -18.96075 -18.34661 -17.68041 -17.45867 -16.99210 -16.69159 -16.60203 -16.17273 -15.66639 -15.54939 -15.26749 -14.70759 -14.02462 -13.84439 -13.57625 -13.11846 -12.85476 -12.70978 -12.25063 -12.10116 -12.04152 -11.69417 -11.65487 -11.45456 -11.23096 -11.17075 -11.06793 -10.91452 -10.59814 -10.45289 -10.29494 -10.15513 -9.89567 -9.78930 -9.50441 -9.09352 -8.88069 -8.35308 -6.09123 -4.22113 -0.47282 -0.18005 0.85324 1.10343 1.80780 2.29930 2.57316 3.03549 3.23064 3.28329 3.30722 3.31616 3.96172 4.02580 4.18940 4.28249 4.37236 4.49244 4.80032 4.88431 5.11435 5.17084 5.36975 5.44472 5.63694 5.66624 5.92356 5.93571 6.09228 6.16955 6.34019 6.48586 6.55306 6.65438 6.84717 7.14833 7.26966 7.33534 7.36929 7.48335 7.81173 8.19787 8.31394 8.75725 9.40705 10.85801 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.003830 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.197408 B = 7309.105411 C = 8036.011360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.073 3.927 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.480 4.480 8 H 0.064 0.936 9 C 0.043 3.957 10 C 0.119 3.881 11 O -0.310 6.310 12 C 0.503 3.497 13 O -0.502 6.502 14 C -0.109 4.109 15 C 0.047 3.953 16 C -0.138 4.138 17 C 0.537 3.463 18 O -0.497 6.497 19 O -0.508 6.508 20 C 0.021 3.979 21 C -0.067 4.067 22 N 0.029 4.971 23 O -0.138 6.138 24 O -0.158 6.158 25 C 0.034 3.966 26 C -0.194 4.194 27 C -0.208 4.208 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.124 0.876 31 H 0.172 0.828 32 H 0.422 0.578 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -2.732 -14.733 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.043 3.957 10 C 0.047 3.953 11 O -0.224 6.224 12 C 0.346 3.654 13 O -0.393 6.393 14 C -0.111 4.111 15 C 0.029 3.971 16 C -0.140 4.140 17 C 0.379 3.621 18 O -0.385 6.385 19 O -0.321 6.321 20 C 0.002 3.998 21 C -0.150 4.150 22 N 0.551 4.449 23 O -0.358 6.358 24 O -0.373 6.373 25 C 0.015 3.985 26 C -0.232 4.232 27 C -0.245 4.245 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.141 0.859 31 H 0.190 0.810 32 H 0.281 0.719 33 H 0.190 0.810 34 H 0.200 0.800 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.697 -2.710 -13.802 15.176 hybrid contribution 0.206 0.956 -0.366 1.044 sum -5.492 -1.754 -14.168 15.296 Atomic orbital electron populations 1.69729 1.05920 1.26948 1.49844 1.24951 0.94866 0.99244 0.93887 0.86572 0.79590 0.82503 0.78962 1.19977 1.21244 1.19973 1.20447 0.92880 0.88297 1.50076 0.91808 1.18924 0.92080 0.90783 0.93929 1.23028 1.00092 0.96653 0.75546 1.86477 1.32215 1.77342 1.26375 1.20334 0.84039 0.74921 0.86105 1.90815 1.28740 1.46943 1.72817 1.19259 0.92104 1.06507 0.93246 1.21839 1.00551 0.83843 0.90866 1.18714 0.90857 1.10977 0.93403 1.20247 0.88107 0.73072 0.80631 1.90972 1.28206 1.47013 1.72269 1.84518 1.43130 1.82690 1.21720 1.21450 0.89022 0.87367 1.01990 1.20890 0.83724 1.16267 0.94139 1.43413 1.02563 0.97976 1.00933 1.94635 1.25383 1.51626 1.64122 1.94537 1.93183 1.51674 0.97930 1.21819 1.00613 0.84669 0.91389 1.22997 1.01788 1.05943 0.92433 1.22970 0.98920 0.99717 1.02892 0.92617 0.95689 0.85859 0.81025 0.71856 0.80969 0.79980 0.89687 0.91366 0.91223 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 10.16 55.43 0.56 -22.77 16 2 C 0.07 1.87 5.35 -17.82 -0.10 1.78 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.48 -12.30 8.79 -34.44 -0.30 -12.60 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.04 1.01 2.21 -155.66 -0.34 0.67 16 10 C 0.12 2.73 4.45 37.16 0.17 2.89 16 11 O -0.31 -6.69 8.98 -40.51 -0.36 -7.05 16 12 C 0.50 9.63 7.88 34.62 0.27 9.90 16 13 O -0.50 -10.59 16.05 -19.24 -0.31 -10.90 16 14 C -0.11 -1.60 5.87 -105.03 -0.62 -2.22 16 15 C 0.05 0.59 9.14 -38.75 -0.35 0.24 16 16 C -0.14 -1.44 5.87 -105.04 -0.62 -2.05 16 17 C 0.54 5.17 8.27 34.61 0.29 5.45 16 18 O -0.50 -6.22 17.13 -19.25 -0.33 -6.55 16 19 O -0.51 -3.14 12.67 -40.52 -0.51 -3.65 16 20 C 0.02 0.21 9.12 -39.08 -0.36 -0.15 16 21 C -0.07 -0.83 6.84 -80.07 -0.55 -1.38 16 22 N 0.03 0.40 4.45 33.90 0.15 0.56 16 23 O -0.14 -2.13 18.43 -29.46 -0.54 -2.68 16 24 O -0.16 -2.15 18.43 -29.46 -0.54 -2.70 16 25 C 0.03 0.47 9.12 -39.08 -0.36 0.11 16 26 C -0.19 -4.05 9.96 -26.69 -0.27 -4.31 16 27 C -0.21 -4.21 9.92 -26.70 -0.26 -4.48 16 28 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 29 H 0.02 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.12 3.15 5.76 -51.93 -0.30 2.85 16 31 H 0.17 2.20 7.24 -52.49 -0.38 1.82 16 32 H 0.42 0.68 9.11 45.56 0.42 1.10 16 33 H 0.17 1.37 7.13 -52.48 -0.37 1.00 16 34 H 0.18 2.63 7.14 -52.49 -0.37 2.26 16 35 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -30.23 353.11 -7.65 -37.88 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -2.67 Total: 3.40 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -3.39 Total: -6.15 kcal Atomic # 7 Polarization: -22.93 SS G_CDS: 0.71 Total: -22.21 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -2.60 Total: -33.53 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.23 -7.65 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833062776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.946 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds