Wall clock time and date at job start Tue Mar 31 2020 18:04:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31312 * 1
3 3 Si 1.86799 * 120.00164 * 2 1
4 4 H 1.48504 * 109.47252 * 239.99999 * 3 2 1
5 5 H 1.48498 * 109.47081 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47154 * 119.99990 * 3 2 1
7 7 C 1.39129 * 119.99965 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00196 * 201.58453 * 7 2 1
9 9 N 1.36759 * 119.99887 * 21.57506 * 7 2 1
10 10 C 1.46505 * 119.99992 * 18.25490 * 9 7 2
11 11 C 1.50700 * 109.47035 * 268.41096 * 10 9 7
12 12 O 1.20824 * 120.00099 * 0.02562 * 11 10 9
13 13 O 1.34224 * 119.99770 * 180.02562 * 11 10 9
14 14 C 1.34774 * 120.00017 * 198.25808 * 9 7 2
15 15 O 1.21541 * 119.99957 * 3.75082 * 14 9 7
16 16 C 1.48298 * 120.00034 * 183.75392 * 14 9 7
17 17 N 1.30842 * 126.32343 * 354.76471 * 16 14 9
18 18 O 1.21273 * 110.32569 * 180.02562 * 17 16 14
19 19 C 1.34226 * 109.92460 * 0.02562 * 18 17 16
20 20 C 1.47851 * 126.56004 * 179.97438 * 19 18 17
21 21 C 1.39589 * 120.13251 * 180.22471 * 20 19 18
22 22 C 1.37946 * 119.90755 * 180.27357 * 21 20 19
23 23 C 1.38345 * 120.16750 * 359.75428 * 22 21 20
24 24 C 1.38545 * 120.26753 * 0.02562 * 23 22 21
25 25 F 1.35101 * 119.95356 * 179.97438 * 24 23 22
26 26 C 1.38217 * 120.09250 * 359.97183 * 24 23 22
27 27 N 1.31913 * 106.88128 * 0.21933 * 19 18 17
28 28 H 0.97000 * 119.99594 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.46872 * 28.41210 * 10 9 7
30 30 H 1.08997 * 109.46477 * 148.41202 * 10 9 7
31 31 H 0.96700 * 116.99919 * 180.02562 * 13 11 10
32 32 H 1.08007 * 120.04723 * 0.03153 * 21 20 19
33 33 H 1.07994 * 119.91818 * 179.72624 * 22 21 20
34 34 H 1.08001 * 119.86467 * 179.97438 * 23 22 21
35 35 H 1.08000 * 120.08716 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3131 0.0000 0.0000
3 14 2.2472 1.6177 0.0000
4 1 3.1009 1.6964 -1.2125
5 1 1.2822 2.7464 -0.0006
6 1 3.1009 1.6963 1.2124
7 6 2.0088 -1.2049 -0.0005
8 1 3.0319 -1.2379 0.3435
9 7 1.3968 -2.3476 -0.4366
10 6 0.1887 -2.2627 -1.2609
11 6 -1.0285 -2.2912 -0.3728
12 8 -0.9000 -2.3734 0.8258
13 8 -2.2553 -2.2252 -0.9133
14 6 1.9051 -3.5517 -0.1079
15 8 2.8668 -3.6240 0.6318
16 6 1.2910 -4.7885 -0.6487
17 7 0.2031 -4.8613 -1.3720
18 8 -0.0368 -6.0154 -1.6570
19 6 0.8988 -6.8207 -1.1300
20 6 0.9625 -8.2930 -1.2497
21 6 1.9992 -9.0014 -0.6398
22 6 2.0573 -10.3745 -0.7592
23 6 1.0878 -11.0515 -1.4774
24 6 0.0532 -10.3559 -2.0817
25 9 -0.8898 -11.0234 -2.7821
26 6 -0.0156 -8.9800 -1.9691
27 7 1.7477 -6.0477 -0.4804
28 1 -0.4849 0.8401 -0.0004
29 1 0.2016 -1.3330 -1.8299
30 1 0.1573 -3.1086 -1.9476
31 1 -3.0055 -2.2465 -0.3034
32 1 2.7571 -8.4749 -0.0786
33 1 2.8617 -10.9223 -0.2912
34 1 1.1383 -12.1265 -1.5681
35 1 -0.8219 -8.4379 -2.4406
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000833065937.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:04:33
Heat of formation + Delta-G solvation = -37.853680 kcal
Electronic energy + Delta-G solvation = -28235.801093 eV
Core-core repulsion = 23732.579406 eV
Total energy + Delta-G solvation = -4503.221687 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.080 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-49.22040 -45.30396 -39.47292 -39.31812 -38.18476 -35.64990 -35.12659 -34.51544
-33.43594 -32.04000 -31.05505 -30.31294 -27.83647 -26.23037 -24.75927 -24.18722
-22.86124 -22.15025 -21.15037 -20.11573 -18.34699 -18.02474 -17.27307 -17.00748
-16.94116 -16.66259 -16.50809 -16.24692 -15.91970 -15.64083 -15.01403 -14.82358
-14.48107 -14.26034 -14.12315 -13.63137 -13.55323 -13.02536 -13.01272 -12.64837
-12.24032 -12.04813 -11.83319 -11.70506 -11.49555 -11.46859 -11.10784 -10.79015
-10.61494 -10.57179 -10.37289 -10.22884 -9.68204 -9.30036 -9.20170 -9.04850
-8.91765 -8.15783 -6.72087 -4.12812 0.17378 0.78697 1.41017 2.13860
2.64544 3.07705 3.10314 3.14133 3.25349 3.35879 3.55462 3.71145
3.88288 4.05472 4.17460 4.22648 4.47298 4.49713 4.70247 4.73527
4.87573 4.91009 5.07373 5.34122 5.56229 5.64508 5.73354 5.87772
5.93140 5.98389 6.17335 6.36024 6.39990 6.48214 7.27715 7.54766
7.65689 8.06336 8.28538 8.77941 8.92788 9.14094 9.52896 10.34622
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.023364 B = 0.003024 C = 0.002765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1198.120941 B = 9255.887942 C =10124.801184
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.856 5.856
2 C 0.036 3.964
3 Si 0.942 3.058
4 H -0.268 1.268
5 H -0.281 1.281
6 H -0.268 1.268
7 C -0.304 4.304
8 H 0.116 0.884
9 N -0.390 5.390
10 C 0.129 3.871
11 C 0.503 3.497
12 O -0.504 6.504
13 O -0.533 6.533
14 C 0.515 3.485
15 O -0.545 6.545
16 C 0.175 3.825
17 N -0.365 5.365
18 O 0.083 5.917
19 C 0.201 3.799
20 C 0.013 3.987
21 C -0.075 4.075
22 C -0.092 4.092
23 C -0.132 4.132
24 C 0.098 3.902
25 F -0.135 7.135
26 C -0.118 4.118
27 N -0.425 5.425
28 H 0.278 0.722
29 H 0.120 0.880
30 H 0.106 0.894
31 H 0.392 0.608
32 H 0.150 0.850
33 H 0.145 0.855
34 H 0.141 0.859
35 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.362 -16.407 -7.086 18.028
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.493 5.493
2 C -0.171 4.171
3 Si 0.767 3.233
4 H -0.193 1.193
5 H -0.207 1.207
6 H -0.193 1.193
7 C -0.432 4.432
8 H 0.134 0.866
9 N -0.109 5.109
10 C 0.003 3.997
11 C 0.344 3.656
12 O -0.389 6.389
13 O -0.343 6.343
14 C 0.300 3.700
15 O -0.426 6.426
16 C -0.098 4.098
17 N -0.076 5.076
18 O 0.023 5.977
19 C -0.018 4.018
20 C 0.011 3.989
21 C -0.095 4.095
22 C -0.109 4.109
23 C -0.152 4.152
24 C 0.078 3.922
25 F -0.113 7.113
26 C -0.139 4.139
27 N -0.159 5.159
28 H 0.089 0.911
29 H 0.138 0.862
30 H 0.123 0.877
31 H 0.248 0.752
32 H 0.167 0.833
33 H 0.162 0.838
34 H 0.159 0.841
35 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -1.755 -15.468 -6.604 16.910
hybrid contribution -0.787 0.646 0.322 1.068
sum -2.542 -14.822 -6.282 16.298
Atomic orbital electron populations
1.69694 1.06463 1.28802 1.44374 1.25482 0.95367 1.00628 0.95620
0.85744 0.78968 0.79037 0.79595 1.19312 1.20655 1.19279 1.19837
0.97992 0.82592 1.42781 0.86592 1.43245 1.21232 1.04454 1.41977
1.21033 0.81606 1.05104 0.91967 1.23159 0.83355 0.70581 0.88543
1.90602 1.86075 1.45462 1.16717 1.84486 1.17044 1.87117 1.45692
1.16161 0.88176 0.79807 0.85809 1.90671 1.29246 1.84199 1.38440
1.26251 0.91032 0.95509 0.97022 1.75062 1.18001 0.96564 1.18012
1.85356 1.43702 1.12067 1.56585 1.26217 0.86509 0.94944 0.94097
1.16917 0.97214 0.83836 1.00980 1.21423 0.96885 0.94087 0.97055
1.21000 0.98545 0.93492 0.97912 1.21398 0.94092 1.01340 0.98323
1.17376 0.88922 0.89658 0.96219 1.91535 1.62912 1.80338 1.76531
1.21214 0.99867 0.92917 0.99909 1.72203 1.24953 0.99902 1.18798
0.91086 0.86179 0.87719 0.75206 0.83258 0.83762 0.84070 0.83265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -22.03 8.73 55.50 0.48 -21.54 16
2 C 0.04 0.90 4.87 -17.44 -0.08 0.82 16
3 Si 0.94 19.62 29.61 -169.99 -5.03 14.59 16
4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16
5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16
6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16
7 C -0.30 -8.25 9.28 -15.02 -0.14 -8.39 16
8 H 0.12 3.21 7.42 -52.49 -0.39 2.82 16
9 N -0.39 -10.24 2.11 -117.01 -0.25 -10.48 16
10 C 0.13 2.98 4.83 -5.19 -0.03 2.96 16
11 C 0.50 11.91 5.82 36.01 0.21 12.12 16
12 O -0.50 -13.89 16.40 -18.75 -0.31 -14.20 16
13 O -0.53 -10.30 13.42 -39.24 -0.53 -10.83 16
14 C 0.51 13.64 7.63 -12.12 -0.09 13.55 16
15 O -0.55 -15.91 16.77 5.33 0.09 -15.82 16
16 C 0.17 3.95 7.71 -156.30 -1.21 2.74 16
17 N -0.37 -7.30 8.25 31.18 0.26 -7.04 16
18 O 0.08 1.38 11.11 16.59 0.18 1.57 16
19 C 0.20 3.19 8.00 -13.81 -0.11 3.08 16
20 C 0.01 0.15 5.87 -104.99 -0.62 -0.47 16
21 C -0.07 -0.75 9.70 -39.18 -0.38 -1.13 16
22 C -0.09 -0.65 10.03 -39.65 -0.40 -1.05 16
23 C -0.13 -0.94 10.02 -39.43 -0.40 -1.33 16
24 C 0.10 0.87 7.29 -39.48 -0.29 0.58 16
25 F -0.13 -1.28 17.26 2.25 0.04 -1.24 16
26 C -0.12 -1.17 9.71 -39.12 -0.38 -1.55 16
27 N -0.43 -8.51 11.27 -10.26 -0.12 -8.62 16
28 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16
29 H 0.12 2.74 6.79 -51.93 -0.35 2.39 16
30 H 0.11 2.21 4.97 -51.93 -0.26 1.95 16
31 H 0.39 5.93 9.10 45.56 0.41 6.34 16
32 H 0.15 1.57 7.87 -52.48 -0.41 1.16 16
33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16
34 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16
35 H 0.15 1.31 7.94 -52.49 -0.42 0.89 16
LS Contribution 325.54 15.07 4.91 4.91
Total: -1.00 -34.40 325.54 -5.57 -39.97
By element:
Atomic # 1 Polarization: 8.21 SS G_CDS: -1.40 Total: 6.81 kcal
Atomic # 6 Polarization: 25.85 SS G_CDS: -3.90 Total: 21.94 kcal
Atomic # 7 Polarization: -48.07 SS G_CDS: 0.38 Total: -47.69 kcal
Atomic # 8 Polarization: -38.72 SS G_CDS: -0.56 Total: -39.28 kcal
Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal
Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -34.40 -5.57 -39.97 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000833065937.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.112 kcal
(2) G-P(sol) polarization free energy of solvation -34.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds