Wall clock time and date at job start Tue Mar 31 2020 18:04:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31312 * 1
3 3 Si 1.86799 * 120.00164 * 2 1
4 4 H 1.48504 * 109.47252 * 239.99999 * 3 2 1
5 5 H 1.48498 * 109.47081 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47154 * 119.99990 * 3 2 1
7 7 C 1.39129 * 119.99965 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00196 * 201.58453 * 7 2 1
9 9 N 1.36759 * 119.99887 * 21.57506 * 7 2 1
10 10 C 1.46505 * 119.99992 * 18.25490 * 9 7 2
11 11 C 1.50700 * 109.47035 * 268.41096 * 10 9 7
12 12 O 1.20824 * 120.00099 * 0.02562 * 11 10 9
13 13 O 1.34224 * 119.99770 * 180.02562 * 11 10 9
14 14 C 1.34774 * 120.00017 * 198.25808 * 9 7 2
15 15 O 1.21541 * 119.99957 * 3.75082 * 14 9 7
16 16 C 1.48298 * 120.00034 * 183.75392 * 14 9 7
17 17 N 1.30842 * 126.32343 * 354.76471 * 16 14 9
18 18 O 1.21273 * 110.32569 * 180.02562 * 17 16 14
19 19 C 1.34226 * 109.92460 * 0.02562 * 18 17 16
20 20 C 1.47851 * 126.56004 * 179.97438 * 19 18 17
21 21 C 1.39589 * 120.13251 * 180.22471 * 20 19 18
22 22 C 1.37946 * 119.90755 * 180.27357 * 21 20 19
23 23 C 1.38345 * 120.16750 * 359.75428 * 22 21 20
24 24 C 1.38545 * 120.26753 * 0.02562 * 23 22 21
25 25 F 1.35101 * 119.95356 * 179.97438 * 24 23 22
26 26 C 1.38217 * 120.09250 * 359.97183 * 24 23 22
27 27 N 1.31913 * 106.88128 * 0.21933 * 19 18 17
28 28 H 0.97000 * 119.99594 * 0.02562 * 1 2 3
29 29 H 1.09002 * 109.46872 * 28.41210 * 10 9 7
30 30 H 1.08997 * 109.46477 * 148.41202 * 10 9 7
31 31 H 0.96700 * 116.99919 * 180.02562 * 13 11 10
32 32 H 1.08007 * 120.04723 * 0.03153 * 21 20 19
33 33 H 1.07994 * 119.91818 * 179.72624 * 22 21 20
34 34 H 1.08001 * 119.86467 * 179.97438 * 23 22 21
35 35 H 1.08000 * 120.08716 * 179.97438 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3131 0.0000 0.0000
3 14 2.2472 1.6177 0.0000
4 1 3.1009 1.6964 -1.2125
5 1 1.2822 2.7464 -0.0006
6 1 3.1009 1.6963 1.2124
7 6 2.0088 -1.2049 -0.0005
8 1 3.0319 -1.2379 0.3435
9 7 1.3968 -2.3476 -0.4366
10 6 0.1887 -2.2627 -1.2609
11 6 -1.0285 -2.2912 -0.3728
12 8 -0.9000 -2.3734 0.8258
13 8 -2.2553 -2.2252 -0.9133
14 6 1.9051 -3.5517 -0.1079
15 8 2.8668 -3.6240 0.6318
16 6 1.2910 -4.7885 -0.6487
17 7 0.2031 -4.8613 -1.3720
18 8 -0.0368 -6.0154 -1.6570
19 6 0.8988 -6.8207 -1.1300
20 6 0.9625 -8.2930 -1.2497
21 6 1.9992 -9.0014 -0.6398
22 6 2.0573 -10.3745 -0.7592
23 6 1.0878 -11.0515 -1.4774
24 6 0.0532 -10.3559 -2.0817
25 9 -0.8898 -11.0234 -2.7821
26 6 -0.0156 -8.9800 -1.9691
27 7 1.7477 -6.0477 -0.4804
28 1 -0.4849 0.8401 -0.0004
29 1 0.2016 -1.3330 -1.8299
30 1 0.1573 -3.1086 -1.9476
31 1 -3.0055 -2.2465 -0.3034
32 1 2.7571 -8.4749 -0.0786
33 1 2.8617 -10.9223 -0.2912
34 1 1.1383 -12.1265 -1.5681
35 1 -0.8219 -8.4379 -2.4406
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000833065937.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:04:32
Heat of formation + Delta-G solvation = -62.626160 kcal
Electronic energy + Delta-G solvation = -28236.875308 eV
Core-core repulsion = 23732.579406 eV
Total energy + Delta-G solvation = -4504.295902 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 335.080 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-49.92389 -46.84229 -41.36099 -40.11829 -40.07452 -37.38061 -36.82428 -36.44153
-34.80674 -33.82627 -31.90172 -31.33643 -29.72707 -28.09361 -25.92106 -25.81933
-23.87956 -23.25740 -22.92640 -21.67596 -19.62013 -19.55033 -19.11898 -18.81992
-18.48559 -18.05431 -17.48958 -17.24551 -17.14075 -16.86956 -16.62225 -16.31712
-16.11257 -15.87836 -15.52703 -14.93796 -14.83382 -14.48045 -14.08235 -13.92832
-13.85459 -13.67729 -13.27553 -12.97545 -12.95113 -12.73954 -12.60953 -12.40767
-12.26702 -12.20771 -12.09531 -11.69376 -11.64750 -11.14031 -11.09447 -10.14038
-10.07902 -9.79305 -8.65984 -6.18429 -0.82734 -0.05939 0.09262 0.84771
1.36010 1.39734 1.42354 1.51086 1.67161 1.74686 1.97974 2.30127
2.42838 2.50749 2.57105 2.84634 2.99301 3.25940 3.56080 3.76518
3.88677 3.97277 4.15226 4.22406 4.23620 4.45078 4.58275 4.66919
4.77464 4.92860 5.00852 5.19091 5.26208 5.27187 5.68502 5.72613
5.87822 6.09758 6.73077 6.80388 6.97700 7.35254 7.54782 8.40177
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.023364 B = 0.003024 C = 0.002765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1198.120941 B = 9255.887942 C =10124.801184
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.871 5.871
2 C 0.007 3.993
3 Si 1.011 2.989
4 H -0.255 1.255
5 H -0.267 1.267
6 H -0.274 1.274
7 C -0.348 4.348
8 H 0.095 0.905
9 N -0.398 5.398
10 C 0.130 3.870
11 C 0.512 3.488
12 O -0.549 6.549
13 O -0.516 6.516
14 C 0.500 3.500
15 O -0.591 6.591
16 C 0.151 3.849
17 N -0.365 5.365
18 O 0.105 5.895
19 C 0.230 3.770
20 C -0.017 4.017
21 C -0.078 4.078
22 C -0.080 4.080
23 C -0.108 4.108
24 C 0.089 3.911
25 F -0.137 7.137
26 C -0.113 4.113
27 N -0.458 5.458
28 H 0.285 0.715
29 H 0.122 0.878
30 H 0.125 0.875
31 H 0.414 0.586
32 H 0.139 0.861
33 H 0.180 0.820
34 H 0.175 0.825
35 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.218 -18.400 -8.375 20.470
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.507 5.507
2 C -0.198 4.198
3 Si 0.832 3.168
4 H -0.179 1.179
5 H -0.192 1.192
6 H -0.200 1.200
7 C -0.476 4.476
8 H 0.113 0.887
9 N -0.115 5.115
10 C 0.004 3.996
11 C 0.354 3.646
12 O -0.438 6.438
13 O -0.328 6.328
14 C 0.288 3.712
15 O -0.476 6.476
16 C -0.122 4.122
17 N -0.074 5.074
18 O 0.040 5.960
19 C 0.013 3.987
20 C -0.020 4.020
21 C -0.098 4.098
22 C -0.097 4.097
23 C -0.127 4.127
24 C 0.070 3.930
25 F -0.116 7.116
26 C -0.134 4.134
27 N -0.190 5.190
28 H 0.095 0.905
29 H 0.140 0.860
30 H 0.142 0.858
31 H 0.273 0.727
32 H 0.157 0.843
33 H 0.197 0.803
34 H 0.193 0.807
35 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -2.662 -17.442 -7.923 19.342
hybrid contribution -0.661 0.965 0.658 1.342
sum -3.322 -16.477 -7.265 18.312
Atomic orbital electron populations
1.69747 1.07485 1.29916 1.43597 1.26382 0.96200 1.03207 0.94017
0.84749 0.77828 0.74651 0.79622 1.17908 1.19177 1.19958 1.19892
0.97941 0.84060 1.45662 0.88689 1.43400 1.21912 1.04306 1.41899
1.21136 0.80705 1.05936 0.91773 1.23127 0.84420 0.69338 0.87739
1.90588 1.86917 1.47728 1.18531 1.84412 1.16491 1.86191 1.45693
1.16612 0.87964 0.81014 0.85639 1.90599 1.31121 1.85334 1.40502
1.25575 0.92341 0.95156 0.99124 1.74940 1.16946 0.98154 1.17327
1.85311 1.43464 1.11246 1.55983 1.26898 0.84372 0.96169 0.91261
1.16982 0.99530 0.81300 1.04178 1.21535 0.96088 0.95504 0.96662
1.21342 0.99219 0.92038 0.97109 1.21821 0.92264 1.02968 0.95674
1.17488 0.89524 0.89290 0.96673 1.91539 1.63159 1.80200 1.76672
1.21252 0.99330 0.93634 0.99136 1.72150 1.26611 0.99331 1.20902
0.90470 0.86040 0.85842 0.72693 0.84317 0.80270 0.80712 0.82571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -45.05 8.73 21.69 0.19 -44.86 16
2 C 0.01 0.37 4.87 84.98 0.41 0.78 16
3 Si 1.01 40.42 29.61 68.60 2.03 42.45 16
4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16
5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16
6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
7 C -0.35 -19.78 9.28 84.14 0.78 -19.00 16
8 H 0.10 5.64 7.42 -2.91 -0.02 5.62 16
9 N -0.40 -21.82 2.11 -642.41 -1.35 -23.18 16
10 C 0.13 6.13 4.83 85.63 0.41 6.54 16
11 C 0.51 24.38 5.82 71.24 0.41 24.80 16
12 O -0.55 -30.96 16.40 21.97 0.36 -30.60 16
13 O -0.52 -19.32 13.42 -51.36 -0.69 -20.01 16
14 C 0.50 28.07 7.63 86.92 0.66 28.74 16
15 O -0.59 -36.94 16.77 -3.85 -0.06 -37.00 16
16 C 0.15 7.07 7.71 137.30 1.06 8.13 16
17 N -0.37 -14.78 8.25 -57.81 -0.48 -15.26 16
18 O 0.11 3.46 11.11 69.43 0.77 4.23 16
19 C 0.23 7.30 8.00 87.31 0.70 8.00 16
20 C -0.02 -0.39 5.87 -20.10 -0.12 -0.51 16
21 C -0.08 -1.43 9.70 22.53 0.22 -1.21 16
22 C -0.08 -0.83 10.03 22.23 0.22 -0.61 16
23 C -0.11 -1.05 10.02 22.37 0.22 -0.83 16
24 C 0.09 1.30 7.29 22.34 0.16 1.47 16
25 F -0.14 -2.19 17.26 44.97 0.78 -1.41 16
26 C -0.11 -1.98 9.71 22.57 0.22 -1.76 16
27 N -0.46 -18.91 11.27 -302.43 -3.41 -22.32 16
28 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16
29 H 0.12 5.63 6.79 -2.39 -0.02 5.61 16
30 H 0.12 5.28 4.97 -2.39 -0.01 5.27 16
31 H 0.41 11.82 9.10 -74.06 -0.67 11.14 16
32 H 0.14 2.86 7.87 -2.91 -0.02 2.83 16
33 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16
34 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16
35 H 0.16 2.43 7.94 -2.91 -0.02 2.41 16
Total: -1.00 -79.18 325.54 4.04 -75.14
By element:
Atomic # 1 Polarization: 17.76 SS G_CDS: 0.53 Total: 18.29 kcal
Atomic # 6 Polarization: 49.16 SS G_CDS: 5.37 Total: 54.53 kcal
Atomic # 7 Polarization: -100.57 SS G_CDS: -5.05 Total: -105.62 kcal
Atomic # 8 Polarization: -83.76 SS G_CDS: 0.38 Total: -83.38 kcal
Atomic # 9 Polarization: -2.19 SS G_CDS: 0.78 Total: -1.41 kcal
Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal
Total: -79.18 4.04 -75.14 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000833065937.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.511 kcal
(2) G-P(sol) polarization free energy of solvation -79.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.669 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds