Wall clock time and date at job start Tue Mar 31 2020 19:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 115.54666 * 2 1 4 4 C 1.50696 * 109.47229 * 80.59212 * 3 2 1 5 5 O 1.20824 * 119.99908 * 355.66906 * 4 3 2 6 6 O 1.34232 * 119.99808 * 175.67040 * 4 3 2 7 7 C 1.45204 * 116.99625 * 179.97438 * 6 4 3 8 8 C 1.53041 * 109.45748 * 209.99813 * 7 6 4 9 9 C 1.53191 * 109.31190 * 178.61800 * 8 7 6 10 10 N 1.46922 * 108.77701 * 54.63239 * 9 8 7 11 11 C 1.36934 * 120.62955 * 126.37005 * 10 9 8 12 12 H 1.08003 * 120.00450 * 335.52385 * 11 10 9 13 13 C 1.38810 * 120.00302 * 155.52209 * 11 10 9 14 14 N 1.31624 * 120.00252 * 141.81357 * 13 11 10 15 15 Si 1.86796 * 119.99930 * 321.81787 * 13 11 10 16 16 H 1.48499 * 109.47352 * 269.99813 * 15 13 11 17 17 H 1.48499 * 109.47212 * 29.99636 * 15 13 11 18 18 H 1.48504 * 109.47547 * 149.99796 * 15 13 11 19 19 C 1.46926 * 118.73991 * 306.64794 * 10 9 8 20 20 C 1.52755 * 109.01067 * 53.30663 * 19 10 9 21 21 C 1.52998 * 117.50006 * 145.66853 * 2 1 3 22 22 C 1.52999 * 117.51954 * 214.29946 * 2 1 3 23 23 Cl 1.80303 * 117.49894 * 0.02562 * 22 2 1 24 24 Cl 1.80298 * 117.49701 * 145.02502 * 22 2 1 25 25 H 1.08995 * 109.47162 * 65.56678 * 1 2 3 26 26 H 1.09000 * 109.47242 * 185.57009 * 1 2 3 27 27 H 1.09001 * 109.47065 * 305.56169 * 1 2 3 28 28 H 1.09003 * 109.47260 * 320.58686 * 3 2 1 29 29 H 1.08998 * 109.46639 * 200.59300 * 3 2 1 30 30 H 1.08998 * 109.45258 * 329.96253 * 7 6 4 31 31 H 1.09005 * 109.49680 * 58.66447 * 8 7 6 32 32 H 1.09001 * 109.50010 * 298.56886 * 8 7 6 33 33 H 1.09004 * 109.58534 * 294.84423 * 9 8 7 34 34 H 1.08996 * 109.58552 * 174.42694 * 9 8 7 35 35 H 0.96997 * 119.99622 * 354.91111 * 14 13 11 36 36 H 1.09004 * 109.58486 * 173.14420 * 19 10 9 37 37 H 1.09000 * 109.58391 * 293.56156 * 19 10 9 38 38 H 1.08992 * 109.56633 * 185.55443 * 20 19 10 39 39 H 1.09003 * 109.36184 * 65.49542 * 20 19 10 40 40 H 1.09004 * 117.49772 * 215.00182 * 21 2 1 41 41 H 1.08992 * 117.50154 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.1969 1.9339 1.4017 5 8 1.6539 1.3263 2.2938 6 8 2.8065 3.1018 1.6590 7 6 2.7732 3.5743 3.0316 8 6 2.7975 5.1044 3.0448 9 6 2.7274 5.5998 4.4927 10 7 3.8118 4.9724 5.2602 11 6 4.6914 5.7375 5.9785 12 1 4.8643 6.7667 5.7002 13 6 5.3609 5.1906 7.0645 14 7 6.6173 5.5101 7.2921 15 14 4.4789 4.0009 8.2029 16 1 3.8278 4.7580 9.3020 17 1 3.4479 3.2553 7.4371 18 1 5.4596 3.0435 8.7746 19 6 3.9383 3.5087 5.2374 20 6 3.9915 3.0365 3.7857 21 6 2.2364 -1.1207 0.7654 22 6 2.2369 -1.1209 -0.7646 23 17 1.2032 -2.3409 -1.5977 24 17 3.7837 -0.7140 -1.5968 25 1 -0.3633 0.4251 -0.9356 26 1 -0.3634 -1.0228 0.0997 27 1 -0.3633 0.5977 0.8360 28 1 1.6302 2.0507 -0.6525 29 1 3.2144 1.2933 -0.3615 30 1 1.8621 3.2215 3.5149 31 1 1.9422 5.4867 2.4876 32 1 3.7199 5.4576 2.5837 33 1 1.7661 5.3250 4.9267 34 1 2.8439 6.6833 4.5142 35 1 7.0976 6.0688 6.6612 36 1 4.8536 3.2130 5.7502 37 1 3.0778 3.0599 5.7335 38 1 3.9860 1.9470 3.7558 39 1 4.9026 3.4091 3.3176 40 1 3.1714 -0.8745 1.2689 41 1 1.6113 -1.8582 1.2686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835232400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:54 Heat of formation + Delta-G solvation = -53.780446 kcal Electronic energy + Delta-G solvation = -24867.405778 eV Core-core repulsion = 21028.770418 eV Total energy + Delta-G solvation = -3838.635360 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.76593 -39.04411 -37.61877 -36.44887 -36.28821 -35.79454 -32.86384 -30.85740 -30.44878 -29.99230 -28.64712 -24.96863 -22.89309 -22.80506 -22.32933 -21.07640 -19.70831 -19.38647 -17.71423 -17.45080 -16.93682 -16.19816 -16.09821 -15.44419 -14.78006 -14.33106 -14.03529 -13.87798 -13.64508 -13.53501 -13.36836 -13.16754 -12.82377 -12.64391 -12.55324 -12.39794 -12.04861 -12.03114 -11.89953 -11.66783 -11.59462 -11.14200 -11.10357 -10.90488 -10.72803 -10.55849 -10.51913 -10.42494 -10.18579 -9.98978 -9.73921 -9.70361 -9.25853 -8.31119 -7.10489 -6.42889 -3.25770 0.73607 1.74435 2.19191 2.40748 3.01940 3.49643 3.56645 3.69703 3.70278 3.84375 4.16405 4.44105 4.62581 4.76293 4.88536 5.07191 5.09616 5.11320 5.19257 5.22324 5.31644 5.35317 5.39614 5.46061 5.52093 5.76413 5.79393 5.98324 6.08728 6.16240 6.23833 6.31751 6.51350 6.64066 6.68048 6.69872 6.94478 7.79323 7.99158 8.39659 8.97609 9.60336 10.17817 10.99107 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.002579 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.854139 B =10856.252675 C =10977.623917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.093 4.093 4 C 0.462 3.538 5 O -0.501 6.501 6 O -0.356 6.356 7 C 0.100 3.900 8 C -0.129 4.129 9 C 0.148 3.852 10 N -0.599 5.599 11 C -0.367 4.367 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.893 5.893 15 Si 1.011 2.989 16 H -0.297 1.297 17 H -0.270 1.270 18 H -0.293 1.293 19 C 0.148 3.852 20 C -0.151 4.151 21 C -0.121 4.121 22 C 0.002 3.998 23 Cl -0.091 7.091 24 Cl -0.091 7.091 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.268 0.732 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 -13.008 -19.272 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.076 4.076 3 C -0.131 4.131 4 C 0.304 3.696 5 O -0.389 6.389 6 O -0.272 6.272 7 C 0.046 3.954 8 C -0.168 4.168 9 C 0.022 3.978 10 N -0.323 5.323 11 C -0.495 4.495 12 H 0.085 0.915 13 C -0.200 4.200 14 N -0.529 5.529 15 Si 0.840 3.160 16 H -0.225 1.225 17 H -0.196 1.196 18 H -0.219 1.219 19 C 0.022 3.978 20 C -0.190 4.190 21 C -0.158 4.158 22 C -0.049 4.049 23 Cl -0.064 7.064 24 Cl -0.064 7.064 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.139 0.861 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.632 -14.060 -17.703 25.424 hybrid contribution -0.064 0.742 -1.501 1.676 sum -11.696 -13.317 -19.204 26.133 Atomic orbital electron populations 1.21478 0.89289 1.03722 1.03293 1.22003 0.96909 0.89766 0.98893 1.21032 1.04784 0.94245 0.93014 1.23185 0.75380 0.79887 0.91137 1.90664 1.42082 1.58691 1.47471 1.86545 1.69517 1.36613 1.34558 1.22885 1.00068 0.95209 0.77249 1.22224 1.02313 0.91840 1.00456 1.20912 0.91164 0.97387 0.88387 1.44401 1.31393 1.01098 1.55363 1.20027 1.20189 0.97735 1.11507 0.91501 1.26047 0.95670 1.01023 0.97228 1.70895 1.06885 1.34069 1.41087 0.84717 0.76727 0.76911 0.77664 1.22481 1.19612 1.21921 1.21256 1.00086 0.84553 0.91903 1.22486 0.97587 0.99584 0.99364 1.24036 1.03851 0.99801 0.88121 1.27212 0.87359 0.97953 0.92391 1.98744 1.68110 1.58322 1.81233 1.98753 1.33209 1.93184 1.81247 0.91144 0.91116 0.90074 0.86350 0.86694 0.90160 0.92012 0.90932 0.95926 0.91422 0.92212 0.91003 0.94951 0.92370 0.91069 0.86127 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.08 37.16 0.34 -0.57 16 2 C -0.07 -0.62 1.59 -154.51 -0.25 -0.87 16 3 C -0.09 -0.84 5.60 -27.88 -0.16 -0.99 16 4 C 0.46 5.91 7.80 36.00 0.28 6.19 16 5 O -0.50 -7.43 14.20 -18.75 -0.27 -7.70 16 6 O -0.36 -5.23 9.88 -39.26 -0.39 -5.62 16 7 C 0.10 1.66 2.42 -26.69 -0.06 1.60 16 8 C -0.13 -2.14 5.74 -26.61 -0.15 -2.29 16 9 C 0.15 2.88 6.52 -3.71 -0.02 2.86 16 10 N -0.60 -14.13 2.77 -172.59 -0.48 -14.60 16 11 C -0.37 -10.09 9.72 -15.06 -0.15 -10.24 16 12 H 0.07 1.95 8.04 -52.48 -0.42 1.53 16 13 C 0.00 0.14 4.79 -17.43 -0.08 0.06 16 14 N -0.89 -26.96 13.70 55.49 0.76 -26.20 16 15 Si 1.01 24.93 26.93 -169.99 -4.58 20.35 16 16 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.27 -6.15 4.78 56.52 0.27 -5.88 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 C 0.15 3.23 4.34 -3.94 -0.02 3.21 16 20 C -0.15 -2.78 5.70 -26.83 -0.15 -2.94 16 21 C -0.12 -1.03 8.80 -26.73 -0.24 -1.26 16 22 C 0.00 0.02 3.61 -26.73 -0.10 -0.08 16 23 Cl -0.09 -0.76 27.82 -51.86 -1.44 -2.20 16 24 Cl -0.09 -0.82 27.33 -51.86 -1.42 -2.24 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.50 7.27 -51.93 -0.38 0.12 16 27 H 0.08 0.69 7.67 -51.93 -0.40 0.30 16 28 H 0.12 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.12 1.00 6.23 -51.93 -0.32 0.67 16 30 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 35 H 0.27 8.01 8.73 -40.82 -0.36 7.65 16 36 H 0.07 1.69 5.60 -51.93 -0.29 1.40 16 37 H 0.03 0.70 6.69 -51.93 -0.35 0.36 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -30.27 355.87 -9.23 -39.50 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.03 Total: -1.32 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.76 Total: -5.33 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.28 Total: -40.80 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.65 Total: -13.32 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.58 Total: 20.35 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.86 Total: -4.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.27 -9.23 -39.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835232400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.283 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds