Wall clock time and date at job start Tue Mar 31 2020 19:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 115.54666 * 2 1 4 4 C 1.50696 * 109.47229 * 80.59212 * 3 2 1 5 5 O 1.20824 * 119.99908 * 355.66906 * 4 3 2 6 6 O 1.34232 * 119.99808 * 175.67040 * 4 3 2 7 7 C 1.45204 * 116.99625 * 179.97438 * 6 4 3 8 8 C 1.53041 * 109.45748 * 209.99813 * 7 6 4 9 9 C 1.53191 * 109.31190 * 178.61800 * 8 7 6 10 10 N 1.46922 * 108.77701 * 54.63239 * 9 8 7 11 11 C 1.36934 * 120.62955 * 126.37005 * 10 9 8 12 12 H 1.08003 * 120.00450 * 335.52385 * 11 10 9 13 13 C 1.38810 * 120.00302 * 155.52209 * 11 10 9 14 14 N 1.31624 * 120.00252 * 141.81357 * 13 11 10 15 15 Si 1.86796 * 119.99930 * 321.81787 * 13 11 10 16 16 H 1.48499 * 109.47352 * 269.99813 * 15 13 11 17 17 H 1.48499 * 109.47212 * 29.99636 * 15 13 11 18 18 H 1.48504 * 109.47547 * 149.99796 * 15 13 11 19 19 C 1.46926 * 118.73991 * 306.64794 * 10 9 8 20 20 C 1.52755 * 109.01067 * 53.30663 * 19 10 9 21 21 C 1.52998 * 117.50006 * 145.66853 * 2 1 3 22 22 C 1.52999 * 117.51954 * 214.29946 * 2 1 3 23 23 Cl 1.80303 * 117.49894 * 0.02562 * 22 2 1 24 24 Cl 1.80298 * 117.49701 * 145.02502 * 22 2 1 25 25 H 1.08995 * 109.47162 * 65.56678 * 1 2 3 26 26 H 1.09000 * 109.47242 * 185.57009 * 1 2 3 27 27 H 1.09001 * 109.47065 * 305.56169 * 1 2 3 28 28 H 1.09003 * 109.47260 * 320.58686 * 3 2 1 29 29 H 1.08998 * 109.46639 * 200.59300 * 3 2 1 30 30 H 1.08998 * 109.45258 * 329.96253 * 7 6 4 31 31 H 1.09005 * 109.49680 * 58.66447 * 8 7 6 32 32 H 1.09001 * 109.50010 * 298.56886 * 8 7 6 33 33 H 1.09004 * 109.58534 * 294.84423 * 9 8 7 34 34 H 1.08996 * 109.58552 * 174.42694 * 9 8 7 35 35 H 0.96997 * 119.99622 * 354.91111 * 14 13 11 36 36 H 1.09004 * 109.58486 * 173.14420 * 19 10 9 37 37 H 1.09000 * 109.58391 * 293.56156 * 19 10 9 38 38 H 1.08992 * 109.56633 * 185.55443 * 20 19 10 39 39 H 1.09003 * 109.36184 * 65.49542 * 20 19 10 40 40 H 1.09004 * 117.49772 * 215.00182 * 21 2 1 41 41 H 1.08992 * 117.50154 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3805 0.0000 4 6 2.1969 1.9339 1.4017 5 8 1.6539 1.3263 2.2938 6 8 2.8065 3.1018 1.6590 7 6 2.7732 3.5743 3.0316 8 6 2.7975 5.1044 3.0448 9 6 2.7274 5.5998 4.4927 10 7 3.8118 4.9724 5.2602 11 6 4.6914 5.7375 5.9785 12 1 4.8643 6.7667 5.7002 13 6 5.3609 5.1906 7.0645 14 7 6.6173 5.5101 7.2921 15 14 4.4789 4.0009 8.2029 16 1 3.8278 4.7580 9.3020 17 1 3.4479 3.2553 7.4371 18 1 5.4596 3.0435 8.7746 19 6 3.9383 3.5087 5.2374 20 6 3.9915 3.0365 3.7857 21 6 2.2364 -1.1207 0.7654 22 6 2.2369 -1.1209 -0.7646 23 17 1.2032 -2.3409 -1.5977 24 17 3.7837 -0.7140 -1.5968 25 1 -0.3633 0.4251 -0.9356 26 1 -0.3634 -1.0228 0.0997 27 1 -0.3633 0.5977 0.8360 28 1 1.6302 2.0507 -0.6525 29 1 3.2144 1.2933 -0.3615 30 1 1.8621 3.2215 3.5149 31 1 1.9422 5.4867 2.4876 32 1 3.7199 5.4576 2.5837 33 1 1.7661 5.3250 4.9267 34 1 2.8439 6.6833 4.5142 35 1 7.0976 6.0688 6.6612 36 1 4.8536 3.2130 5.7502 37 1 3.0778 3.0599 5.7335 38 1 3.9860 1.9470 3.7558 39 1 4.9026 3.4091 3.3176 40 1 3.1714 -0.8745 1.2689 41 1 1.6113 -1.8582 1.2686 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835232400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:53 Heat of formation + Delta-G solvation = -69.106815 kcal Electronic energy + Delta-G solvation = -24868.070379 eV Core-core repulsion = 21028.770418 eV Total energy + Delta-G solvation = -3839.299961 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81704 -39.94466 -38.96948 -37.36176 -37.11064 -36.68914 -34.76406 -32.43198 -32.02203 -30.97904 -29.29794 -26.71174 -24.39742 -24.01396 -23.42086 -22.30402 -21.21811 -20.21615 -19.43429 -18.77701 -17.76537 -17.34573 -17.06784 -16.36888 -16.19390 -16.11217 -15.57083 -15.18134 -14.96454 -14.55065 -14.42644 -14.25564 -14.00592 -13.95489 -13.75362 -13.34160 -13.19678 -13.05841 -12.71137 -12.65836 -12.53480 -12.47438 -12.33763 -12.25542 -12.20391 -11.81139 -11.76765 -11.61926 -11.45903 -11.33299 -11.16466 -11.01759 -10.75649 -10.42743 -9.09550 -8.63545 -5.41030 0.07679 1.07615 1.19319 1.49546 1.52554 1.56120 1.74981 2.22133 2.58491 2.90333 3.02754 3.18747 3.39683 3.46369 3.70778 3.77173 3.81493 3.82467 4.10145 4.24801 4.41490 4.46072 4.48085 4.59604 4.60432 4.68810 4.73068 4.79100 4.85083 4.88094 4.90564 4.93684 5.00968 5.12513 5.22987 5.31879 5.59583 5.83146 6.24290 6.73554 6.87031 7.60283 8.10263 8.77365 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.002579 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.854139 B =10856.252675 C =10977.623917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.074 4.074 3 C -0.087 4.087 4 C 0.462 3.538 5 O -0.520 6.520 6 O -0.356 6.356 7 C 0.107 3.893 8 C -0.118 4.118 9 C 0.143 3.857 10 N -0.615 5.615 11 C -0.354 4.354 12 H 0.036 0.964 13 C -0.047 4.047 14 N -0.931 5.931 15 Si 1.057 2.943 16 H -0.295 1.295 17 H -0.240 1.240 18 H -0.298 1.298 19 C 0.145 3.855 20 C -0.142 4.142 21 C -0.128 4.128 22 C 0.008 3.992 23 Cl -0.089 7.089 24 Cl -0.097 7.097 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -14.368 -20.871 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.305 3.695 5 O -0.409 6.409 6 O -0.273 6.273 7 C 0.052 3.948 8 C -0.157 4.157 9 C 0.018 3.982 10 N -0.340 5.340 11 C -0.483 4.483 12 H 0.054 0.946 13 C -0.245 4.245 14 N -0.570 5.570 15 Si 0.882 3.118 16 H -0.223 1.223 17 H -0.165 1.165 18 H -0.225 1.225 19 C 0.019 3.981 20 C -0.181 4.181 21 C -0.165 4.165 22 C -0.044 4.044 23 Cl -0.062 7.062 24 Cl -0.070 7.070 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.988 -15.431 -19.345 28.426 hybrid contribution 0.625 1.181 -1.118 1.742 sum -13.363 -14.251 -20.463 28.291 Atomic orbital electron populations 1.21480 0.88471 1.03937 1.03651 1.22064 0.97457 0.89366 0.98669 1.21123 1.05663 0.94844 0.90785 1.23872 0.74342 0.78913 0.92333 1.90664 1.42859 1.58930 1.48424 1.86556 1.70129 1.37734 1.32896 1.22588 0.98835 0.95051 0.78287 1.22040 1.03213 0.91989 0.98503 1.21087 0.90427 0.97127 0.89588 1.44491 1.32274 1.01737 1.55471 1.19907 1.20163 0.96848 1.11384 0.94584 1.27063 0.95575 1.03040 0.98857 1.71004 1.08184 1.36220 1.41639 0.84104 0.76256 0.75383 0.76065 1.22266 1.16467 1.22485 1.21248 0.99244 0.83574 0.93985 1.22299 0.98146 1.00342 0.97337 1.24105 1.03847 1.00293 0.88268 1.27159 0.87059 0.97933 0.92230 1.98748 1.67983 1.58258 1.81198 1.98755 1.33706 1.93209 1.81359 0.89690 0.90769 0.91023 0.83736 0.86217 0.90038 0.88659 0.92150 0.94113 0.91912 0.93662 0.93256 0.94006 0.91033 0.92426 0.86746 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.08 71.98 0.65 -0.80 16 2 C -0.07 -1.06 1.59 -52.18 -0.08 -1.14 16 3 C -0.09 -1.30 5.60 29.85 0.17 -1.14 16 4 C 0.46 10.53 7.80 71.23 0.56 11.09 16 5 O -0.52 -14.09 14.20 21.97 0.31 -13.78 16 6 O -0.36 -9.48 9.88 -51.44 -0.51 -9.99 16 7 C 0.11 3.28 2.42 30.62 0.07 3.36 16 8 C -0.12 -3.64 5.74 30.67 0.18 -3.46 16 9 C 0.14 5.31 6.52 86.36 0.56 5.88 16 10 N -0.61 -28.60 2.77 -699.95 -1.94 -30.54 16 11 C -0.35 -19.80 9.72 84.03 0.82 -18.98 16 12 H 0.04 2.19 8.04 -2.91 -0.02 2.17 16 13 C -0.05 -2.70 4.79 84.86 0.41 -2.29 16 14 N -0.93 -58.07 13.70 21.65 0.30 -57.77 16 15 Si 1.06 50.71 26.93 68.60 1.85 52.55 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 17 H -0.24 -10.23 4.78 99.48 0.48 -9.76 16 18 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 19 C 0.15 6.13 4.34 86.22 0.37 6.51 16 20 C -0.14 -5.02 5.70 30.53 0.17 -4.85 16 21 C -0.13 -1.93 8.80 30.59 0.27 -1.66 16 22 C 0.01 0.11 3.61 30.59 0.11 0.22 16 23 Cl -0.09 -1.29 27.82 -2.72 -0.08 -1.37 16 24 Cl -0.10 -1.57 27.33 -2.72 -0.07 -1.65 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.86 7.27 -2.39 -0.02 0.84 16 27 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 28 H 0.14 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.12 1.75 6.23 -2.39 -0.01 1.74 16 30 H 0.08 2.54 7.16 -2.39 -0.02 2.53 16 31 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 2.36 7.92 -2.39 -0.02 2.35 16 35 H 0.25 15.95 8.73 -92.71 -0.81 15.14 16 36 H 0.05 2.30 5.60 -2.38 -0.01 2.28 16 37 H 0.04 1.70 6.69 -2.39 -0.02 1.69 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.76 355.87 4.88 -60.88 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.77 Total: 8.94 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.26 Total: -7.27 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.64 Total: -88.31 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.20 Total: -23.77 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.85 Total: 52.55 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.15 Total: -3.02 kcal Total: -65.76 4.88 -60.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835232400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.226 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds