Wall clock time and date at job start Tue Mar 31 2020 19:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00338 * 2 1 4 4 H 1.48495 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47155 * 300.00463 * 3 2 1 6 6 H 1.48496 * 109.46765 * 60.00081 * 3 2 1 7 7 C 1.37881 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00258 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00036 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88755 * 303.88263 * 9 7 2 11 11 C 1.55163 * 111.00330 * 180.02562 * 9 7 2 12 12 C 1.54323 * 102.94096 * 206.38548 * 11 9 7 13 13 N 1.47023 * 107.27316 * 22.19446 * 12 11 9 14 14 C 1.34777 * 125.65228 * 181.02306 * 13 12 11 15 15 O 1.21786 * 120.00433 * 185.18754 * 14 13 12 16 16 C 1.41667 * 119.99651 * 5.19319 * 14 13 12 17 17 C 1.38714 * 126.79896 * 260.42641 * 16 14 13 18 18 Cl 1.73599 * 125.91705 * 0.02562 * 17 16 14 19 19 N 1.32418 * 108.16628 * 179.97438 * 17 16 14 20 20 C 1.33203 * 109.83826 * 359.97438 * 19 17 16 21 21 C 1.40655 * 131.78481 * 180.28506 * 20 19 17 22 22 C 1.36288 * 119.38903 * 180.18414 * 21 20 19 23 23 C 1.40170 * 119.60931 * 359.48310 * 22 21 20 24 24 C 1.35271 * 120.12012 * 0.30230 * 23 22 21 25 25 N 1.35953 * 120.63954 * 359.94798 * 24 23 22 26 26 C 1.47422 * 108.70118 * 1.28349 * 13 12 11 27 27 H 0.97000 * 119.99933 * 359.97438 * 1 2 3 28 28 H 0.96699 * 113.99807 * 56.12109 * 10 9 7 29 29 H 1.09000 * 110.71777 * 88.02289 * 11 9 7 30 30 H 1.08994 * 110.72048 * 324.74676 * 11 9 7 31 31 H 1.09004 * 109.88370 * 262.77536 * 12 11 9 32 32 H 1.09000 * 110.01270 * 141.68564 * 12 11 9 33 33 H 1.08002 * 120.30248 * 359.97438 * 21 20 19 34 34 H 1.08002 * 120.19710 * 179.78620 * 22 21 20 35 35 H 1.07995 * 119.94406 * 180.27469 * 23 22 21 36 36 H 1.07998 * 119.67597 * 179.97438 * 24 23 22 37 37 H 1.09002 * 110.36596 * 94.48296 * 26 13 12 38 38 H 1.09003 * 110.37153 * 216.80798 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3521 -2.5685 1.1082 11 6 2.2274 -3.7051 -0.0005 12 6 1.3977 -4.8215 -0.6689 13 7 0.3463 -4.1685 -1.4625 14 6 -0.6005 -4.8008 -2.1839 15 8 -1.3658 -4.1585 -2.8802 16 6 -0.7054 -6.2126 -2.1320 17 6 -0.2125 -7.1171 -3.0610 18 17 0.6536 -6.7172 -4.5114 19 7 -0.5161 -8.3385 -2.6494 20 6 -1.1821 -8.2748 -1.4975 21 6 -1.7126 -9.2768 -0.6650 22 6 -2.3641 -8.9210 0.4779 23 6 -2.4863 -7.5652 0.8121 24 6 -1.9654 -6.6165 0.0007 25 7 -1.3185 -6.9627 -1.1439 26 6 0.5029 -2.7075 -1.3435 27 1 -0.4850 0.8401 0.0004 28 1 -0.2774 -1.8357 1.1505 29 1 2.4973 -3.9826 1.0184 30 1 3.1170 -3.4809 -0.5889 31 1 0.9463 -5.4555 0.0943 32 1 2.0346 -5.4211 -1.3194 33 1 -1.6076 -10.3183 -0.9309 34 1 -2.7796 -9.6794 1.1249 35 1 -2.9976 -7.2774 1.7187 36 1 -2.0640 -5.5740 0.2649 37 1 1.0939 -2.3204 -2.1736 38 1 -0.4728 -2.2225 -1.3128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:41 Heat of formation + Delta-G solvation = -8.094122 kcal Electronic energy + Delta-G solvation = -26891.825465 eV Core-core repulsion = 22954.063720 eV Total energy + Delta-G solvation = -3937.761746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.15219 -41.08640 -39.12828 -38.62841 -37.72016 -36.20000 -34.91459 -34.18179 -32.21222 -31.39347 -30.53213 -29.58194 -27.25640 -25.37185 -24.76031 -23.90720 -23.28896 -21.55639 -20.97873 -19.32506 -19.01836 -18.20503 -18.05166 -17.54393 -17.09727 -16.92034 -16.72030 -16.51660 -16.03988 -15.73737 -15.51170 -14.94053 -14.77222 -14.69209 -14.05482 -13.90796 -13.54019 -13.49117 -13.36614 -12.94163 -12.89485 -12.62969 -12.58636 -12.39699 -12.36665 -12.24898 -12.18724 -12.14954 -11.74990 -11.36217 -11.26817 -10.68509 -10.39694 -9.98196 -9.68706 -9.10768 -8.29362 -6.45463 -0.42279 -0.17140 0.32472 0.82581 1.22015 1.40671 1.45009 1.55117 1.59363 2.05224 2.37133 2.37985 2.96967 2.98191 3.40132 3.48795 3.67619 3.69704 3.88917 4.01946 4.08498 4.10557 4.20900 4.40479 4.49522 4.60231 4.63709 4.86781 4.91946 4.98461 5.01780 5.11985 5.15140 5.29110 5.38981 5.41178 5.71099 5.72792 5.99033 6.25568 6.35462 6.62324 6.81322 7.26911 7.35736 8.76880 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.003887 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.365104 B = 7201.141717 C = 8172.639919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.029 3.971 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.240 3.760 10 O -0.587 6.587 11 C -0.109 4.109 12 C 0.113 3.887 13 N -0.593 5.593 14 C 0.606 3.394 15 O -0.572 6.572 16 C -0.130 4.130 17 C 0.156 3.844 18 Cl 0.016 6.984 19 N -0.507 5.507 20 C 0.242 3.758 21 C -0.092 4.092 22 C -0.058 4.058 23 C -0.103 4.103 24 C 0.025 3.975 25 N -0.328 5.328 26 C 0.105 3.895 27 H 0.272 0.728 28 H 0.379 0.621 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.186 0.814 34 H 0.202 0.798 35 H 0.197 0.803 36 H 0.153 0.847 37 H 0.051 0.949 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -18.521 4.118 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.171 4.171 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.200 3.800 10 O -0.396 6.396 11 C -0.147 4.147 12 C -0.009 4.009 13 N -0.324 5.324 14 C 0.394 3.606 15 O -0.452 6.452 16 C -0.246 4.246 17 C -0.009 4.009 18 Cl 0.044 6.956 19 N -0.229 5.229 20 C 0.002 3.998 21 C -0.112 4.112 22 C -0.082 4.082 23 C -0.122 4.122 24 C -0.098 4.098 25 N 0.001 4.999 26 C -0.018 4.018 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.203 0.797 34 H 0.219 0.781 35 H 0.214 0.786 36 H 0.170 0.830 37 H 0.070 0.930 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.064 -19.245 3.298 19.764 hybrid contribution -0.096 2.829 -0.514 2.877 sum -3.160 -16.415 2.784 16.947 Atomic orbital electron populations 1.69659 1.07163 1.28583 1.50318 1.25785 0.95727 1.02759 0.92873 0.85404 0.79187 0.78920 0.77531 1.18809 1.20983 1.20388 1.21846 0.94138 0.91041 1.52364 0.91065 1.19785 0.86017 0.93028 0.81211 1.86042 1.51178 1.52585 1.49812 1.22634 0.97500 0.93065 1.01499 1.22057 0.88842 0.95917 0.94072 1.48812 1.29121 1.08933 1.45559 1.15309 0.80482 0.84965 0.79890 1.90821 1.44487 1.68063 1.41799 1.19137 1.17039 0.92105 0.96354 1.21160 0.99321 0.89250 0.91189 1.98385 1.73174 1.92501 1.31540 1.70076 1.20111 1.21519 1.11184 1.21523 1.00878 0.83511 0.93909 1.20871 0.98502 0.98653 0.93196 1.21793 0.94482 0.96738 0.95140 1.21569 0.98387 0.92094 1.00160 1.22155 0.98687 1.03131 0.85843 1.42497 1.33963 1.08379 1.15042 1.23081 1.00538 0.77386 1.00768 0.91879 0.77004 0.89216 0.89024 0.91799 0.90521 0.79658 0.78075 0.78562 0.82958 0.93048 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.44 10.72 21.45 0.23 -48.21 16 2 C 0.03 1.49 5.30 84.66 0.45 1.94 16 3 Si 0.96 40.78 29.54 68.60 2.03 42.81 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.56 -28.09 8.25 25.60 0.21 -27.88 16 8 H 0.07 3.49 7.76 -2.91 -0.02 3.47 16 9 C 0.24 11.29 0.89 -10.07 -0.01 11.28 16 10 O -0.59 -28.86 13.19 -148.98 -1.97 -30.82 16 11 C -0.11 -4.13 6.12 31.78 0.19 -3.94 16 12 C 0.11 4.03 6.45 86.73 0.56 4.59 16 13 N -0.59 -25.14 3.32 -821.82 -2.73 -27.87 16 14 C 0.61 26.37 7.19 85.09 0.61 26.98 16 15 O -0.57 -29.24 17.39 -4.62 -0.08 -29.32 16 16 C -0.13 -4.81 5.69 39.07 0.22 -4.59 16 17 C 0.16 5.54 7.77 84.72 0.66 6.20 16 18 Cl 0.02 0.51 29.11 -2.72 -0.08 0.43 16 19 N -0.51 -16.32 11.25 -183.61 -2.07 -18.39 16 20 C 0.24 6.49 7.77 134.00 1.04 7.53 16 21 C -0.09 -1.40 10.10 22.41 0.23 -1.17 16 22 C -0.06 -0.51 10.07 22.28 0.22 -0.28 16 23 C -0.10 -1.30 10.00 22.05 0.22 -1.08 16 24 C 0.03 0.59 10.82 83.37 0.90 1.50 16 25 N -0.33 -9.88 2.96 -344.09 -1.02 -10.90 16 26 C 0.10 5.08 5.63 86.93 0.49 5.57 16 27 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 28 H 0.38 19.69 6.93 -74.06 -0.51 19.17 16 29 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.09 3.24 8.01 -2.39 -0.02 3.22 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.20 -0.19 8.06 -2.91 -0.02 -0.22 16 35 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.05 2.59 8.04 -2.39 -0.02 2.57 16 38 H 0.05 2.68 7.69 -2.39 -0.02 2.67 16 Total: -1.00 -70.67 344.25 0.92 -69.75 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.61 Total: 25.88 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.00 Total: 26.64 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -5.59 Total: -105.37 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -2.05 Total: -60.14 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -70.67 0.92 -69.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.658 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds