Wall clock time and date at job start Tue Mar 31 2020 19:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47186 * 272.90975 * 3 2 1 5 5 H 1.48497 * 109.47472 * 32.91401 * 3 2 1 6 6 H 1.48509 * 109.46834 * 152.91145 * 3 2 1 7 7 C 1.38816 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00295 * 339.36051 * 7 2 1 9 9 N 1.36940 * 119.99539 * 159.36234 * 7 2 1 10 10 C 1.46926 * 120.63032 * 332.62210 * 9 7 2 11 11 C 1.53185 * 108.77623 * 233.58886 * 10 9 7 12 12 C 1.53042 * 109.31429 * 305.36957 * 11 10 9 13 13 O 1.45199 * 109.46558 * 181.38607 * 12 11 10 14 14 C 1.34227 * 117.00633 * 149.96941 * 13 12 11 15 15 O 1.20828 * 119.99361 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00300 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47384 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47272 * 179.97438 * 17 16 14 19 19 H 1.08999 * 115.56223 * 330.68703 * 18 17 16 20 20 C 1.52998 * 117.49784 * 116.37621 * 18 17 16 21 21 C 1.52997 * 60.00036 * 107.49005 * 20 18 17 22 22 Cl 1.80295 * 117.50083 * 107.49237 * 21 20 18 23 23 Cl 1.80298 * 117.49531 * 252.51038 * 21 20 18 24 24 C 1.53041 * 109.52712 * 61.37081 * 12 11 10 25 25 C 1.46924 * 120.62771 * 152.60542 * 9 7 2 26 26 H 0.96996 * 120.00022 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.57762 * 113.80093 * 10 9 7 28 28 H 1.08993 * 109.58994 * 353.37905 * 10 9 7 29 29 H 1.09003 * 109.50002 * 185.41934 * 11 10 9 30 30 H 1.09003 * 109.52805 * 65.33287 * 11 10 9 31 31 H 1.09005 * 109.45767 * 301.35906 * 12 11 10 32 32 H 1.08998 * 109.47567 * 59.99653 * 16 14 13 33 33 H 1.09009 * 109.46840 * 300.00086 * 16 14 13 34 34 H 1.08998 * 109.47353 * 59.99153 * 17 16 14 35 35 H 1.09003 * 109.46471 * 299.99691 * 17 16 14 36 36 H 1.09002 * 117.50324 * 359.97438 * 20 18 17 37 37 H 1.09010 * 117.49808 * 214.98010 * 20 18 17 38 38 H 1.08991 * 109.50039 * 58.58231 * 24 12 11 39 39 H 1.09006 * 109.49746 * 178.68065 * 24 12 11 40 40 H 1.09000 * 109.58619 * 246.20028 * 25 9 7 41 41 H 1.08998 * 109.58815 * 6.62540 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0820 -1.3983 5 1 1.4798 2.6341 0.7607 6 1 3.5772 1.4231 0.6376 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3287 9 7 3.3137 -1.2400 -0.4186 10 6 3.8176 -0.2582 -1.3885 11 6 4.4628 -1.0073 -2.5586 12 6 5.5294 -1.9640 -2.0207 13 8 6.1659 -2.6519 -3.1297 14 6 7.4468 -3.0181 -2.9654 15 8 8.0171 -2.7722 -1.9290 16 6 8.1734 -3.7357 -4.0735 17 6 9.6070 -4.0368 -3.6321 18 6 10.3445 -4.7660 -4.7569 19 1 9.7212 -5.3784 -5.4084 20 6 11.5455 -4.0591 -5.3885 21 6 11.7629 -5.2609 -4.4669 22 17 12.2754 -6.8125 -5.2290 23 17 12.4374 -4.9402 -2.8259 24 6 4.8752 -2.9897 -1.0923 25 6 4.2350 -2.2630 0.0947 26 1 -0.4850 0.8400 0.0004 27 1 4.5599 0.3805 -0.9097 28 1 2.9911 0.3503 -1.7554 29 1 4.9255 -0.2916 -3.2381 30 1 3.7006 -1.5753 -3.0922 31 1 6.2783 -1.3982 -1.4664 32 1 8.1914 -3.1065 -4.9634 33 1 7.6594 -4.6700 -4.2996 34 1 9.5886 -4.6662 -2.7423 35 1 10.1212 -3.1027 -3.4057 36 1 11.8100 -3.0745 -5.0030 37 1 11.7122 -4.2065 -6.4557 38 1 4.1088 -3.5388 -1.6392 39 1 5.6315 -3.6851 -0.7279 40 1 5.0113 -1.7878 0.6944 41 1 3.6839 -2.9774 0.7063 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850896802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:45 Heat of formation + Delta-G solvation = -60.623468 kcal Electronic energy + Delta-G solvation = -24038.869687 eV Core-core repulsion = 20199.937592 eV Total energy + Delta-G solvation = -3838.932095 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.58052 -38.83326 -37.81533 -36.48852 -36.26335 -35.94014 -32.94885 -32.48625 -30.65610 -30.41012 -26.38269 -24.83947 -23.05491 -22.82493 -22.04670 -21.22116 -20.56037 -19.65219 -17.71568 -17.11855 -16.89987 -16.37669 -16.23860 -15.39329 -15.12631 -14.60074 -14.23600 -13.86461 -13.85818 -13.46441 -13.29868 -13.06205 -12.96503 -12.58883 -12.51538 -12.38904 -12.07267 -11.94128 -11.86192 -11.67596 -11.60506 -11.33587 -11.31799 -10.89939 -10.81670 -10.70810 -10.57552 -10.46563 -10.23247 -10.14400 -9.88535 -9.77876 -9.44990 -8.68931 -7.06511 -5.99005 -3.35827 0.71325 1.69572 2.22317 2.56800 2.76760 3.27772 3.45806 3.48345 3.59510 3.76608 4.31594 4.43681 4.48599 4.67145 4.80222 4.85102 4.89933 4.99309 5.09868 5.15021 5.18023 5.25304 5.34603 5.51244 5.52481 5.73040 5.76384 5.94532 6.07279 6.10886 6.20708 6.29543 6.50641 6.54441 6.60967 6.66331 6.89915 7.81447 7.90136 8.28417 8.87870 9.66589 10.02945 11.16726 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.001966 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.260987 B =14237.437699 C =14274.866354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.128 3.872 11 C -0.129 4.129 12 C 0.098 3.902 13 O -0.356 6.356 14 C 0.457 3.543 15 O -0.509 6.509 16 C -0.112 4.112 17 C -0.085 4.085 18 C -0.113 4.113 19 H 0.134 0.866 20 C -0.142 4.142 21 C -0.003 4.003 22 Cl -0.097 7.097 23 Cl -0.087 7.087 24 C -0.148 4.148 25 C 0.152 3.848 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.431 -10.126 -13.758 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.105 0.895 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.169 4.169 12 C 0.044 3.956 13 O -0.272 6.272 14 C 0.299 3.701 15 O -0.398 6.398 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.132 4.132 19 H 0.151 0.849 20 C -0.179 4.179 21 C -0.054 4.054 22 Cl -0.070 7.070 23 Cl -0.060 7.060 24 C -0.187 4.187 25 C 0.026 3.974 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.484 -10.047 -13.311 29.624 hybrid contribution 0.616 0.822 0.128 1.035 sum 25.101 -9.225 -13.182 29.815 Atomic orbital electron populations 1.69835 1.05697 1.26622 1.52709 1.25294 0.95260 0.97590 0.99414 0.86984 0.80138 0.84711 0.77096 1.21519 1.22970 1.19503 1.18924 0.84806 0.94881 1.40359 0.89510 1.44430 1.08791 1.33229 1.46500 1.21376 0.97408 0.92053 0.88909 1.22237 0.97051 0.97684 0.99884 1.22870 0.93901 0.93374 0.85448 1.86547 1.25729 1.69079 1.45888 1.23525 0.81142 0.76895 0.88496 1.90672 1.67745 1.52065 1.29282 1.21319 0.94743 1.02080 0.96784 1.21128 0.93061 1.01470 0.96615 1.23302 0.89089 1.00453 1.00393 0.84870 1.24108 0.98778 0.95513 0.99545 1.26809 1.01783 0.89218 0.87629 1.98757 1.92214 1.34842 1.81137 1.98771 1.86888 1.94784 1.25511 1.22459 0.99968 0.97965 0.98315 1.20886 0.92429 0.91464 0.92659 0.92689 0.95382 0.90032 0.91937 0.90420 0.90237 0.87460 0.87419 0.89229 0.89730 0.85941 0.86018 0.90866 0.92214 0.95551 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.47 13.97 55.49 0.78 -26.69 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 22.05 24.34 -169.99 -4.14 17.91 16 4 H -0.29 -6.88 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.67 6.64 56.52 0.38 -6.30 16 7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.55 8.05 -52.49 -0.42 2.13 16 9 N -0.61 -14.31 2.77 -172.33 -0.48 -14.78 16 10 C 0.13 2.76 4.20 -3.71 -0.02 2.75 16 11 C -0.13 -2.29 5.74 -26.61 -0.15 -2.44 16 12 C 0.10 1.64 2.42 -26.69 -0.06 1.58 16 13 O -0.36 -5.18 9.88 -39.25 -0.39 -5.57 16 14 C 0.46 5.78 7.93 36.00 0.29 6.07 16 15 O -0.51 -7.95 15.20 -18.75 -0.29 -8.23 16 16 C -0.11 -0.82 5.77 -27.89 -0.16 -0.99 16 17 C -0.09 -0.61 3.87 -26.73 -0.10 -0.71 16 18 C -0.11 -0.59 5.58 -90.62 -0.51 -1.10 16 19 H 0.13 0.51 8.07 -51.93 -0.42 0.09 16 20 C -0.14 -0.62 9.86 -26.73 -0.26 -0.89 16 21 C 0.00 -0.02 3.62 -26.73 -0.10 -0.12 16 22 Cl -0.10 -0.70 29.29 -51.86 -1.52 -2.22 16 23 Cl -0.09 -0.73 28.23 -51.86 -1.46 -2.20 16 24 C -0.15 -2.54 5.72 -26.61 -0.15 -2.69 16 25 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 28 H 0.08 1.90 4.49 -51.93 -0.23 1.67 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.40 7.16 -51.93 -0.37 1.03 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.09 0.78 7.98 -51.93 -0.41 0.37 16 35 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 36 H 0.12 0.49 8.03 -51.93 -0.42 0.07 16 37 H 0.12 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 360.60 15.07 5.43 5.43 Total: -1.00 -31.84 360.60 -9.59 -41.43 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.04 Total: -2.73 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.30 Total: -41.48 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.67 Total: -13.81 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.91 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -2.98 Total: -4.42 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.84 -9.59 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850896802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.195 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds